Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33471 * 125.49951 * 2 1 4 4 C 1.30332 * 109.72571 * 179.97438 * 3 2 1 5 5 N 1.34682 * 108.04609 * 0.04757 * 4 3 2 6 6 N 1.30986 * 125.49395 * 179.97438 * 2 1 3 7 7 C 1.46291 * 125.04505 * 179.90817 * 5 4 3 8 8 C 1.53305 * 108.76984 * 342.93887 * 7 5 4 9 9 C 1.53152 * 109.49124 * 50.14935 * 8 7 5 10 10 C 1.50927 * 127.90230 * 180.02562 * 4 3 2 11 11 H 1.08995 * 109.71694 * 283.72964 * 10 4 3 12 12 N 1.46502 * 109.74915 * 44.34977 * 10 4 3 13 13 S 1.65602 * 119.99985 * 263.76507 * 12 10 4 14 14 O 1.42097 * 104.27665 * 181.07060 * 13 12 10 15 15 O 1.42099 * 104.27778 * 308.93371 * 13 12 10 16 16 C 1.81402 * 104.44873 * 65.00268 * 13 12 10 17 17 C 1.52997 * 109.47204 * 173.41296 * 16 13 12 18 18 C 1.50694 * 115.55186 * 39.94710 * 17 16 13 19 19 H 1.07995 * 120.00457 * 264.83901 * 18 17 16 20 20 C 1.37881 * 119.99648 * 84.83619 * 18 17 16 21 21 N 1.31510 * 120.00216 * 353.17240 * 20 18 17 22 22 Si 1.86800 * 119.99830 * 173.17743 * 20 18 17 23 23 H 1.48500 * 109.47215 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47321 * 119.99840 * 22 20 18 25 25 H 1.48503 * 109.46864 * 239.99829 * 22 20 18 26 26 C 1.53004 * 117.49638 * 254.24042 * 17 16 13 27 27 C 1.52998 * 117.50031 * 185.62035 * 17 16 13 28 28 H 1.09000 * 109.47187 * 269.97847 * 1 2 3 29 29 H 1.08998 * 109.47256 * 29.97657 * 1 2 3 30 30 H 1.09000 * 109.47334 * 149.97236 * 1 2 3 31 31 H 1.09011 * 109.58808 * 102.73778 * 7 5 4 32 32 H 1.08994 * 109.58941 * 223.16388 * 7 5 4 33 33 H 1.09001 * 109.47231 * 290.14094 * 8 7 5 34 34 H 1.09002 * 109.46847 * 170.15398 * 8 7 5 35 35 H 1.09001 * 109.51013 * 170.89393 * 9 8 7 36 36 H 1.08995 * 109.50750 * 50.75895 * 9 8 7 37 37 H 0.96996 * 120.00307 * 83.76591 * 12 10 4 38 38 H 1.09001 * 109.47177 * 293.41499 * 16 13 12 39 39 H 1.09004 * 109.47296 * 53.41071 * 16 13 12 40 40 H 0.96998 * 120.00232 * 185.01929 * 21 20 18 41 41 H 1.08993 * 117.50317 * 0.02562 * 26 17 16 42 42 H 1.09005 * 117.49489 * 145.02054 * 26 17 16 43 43 H 1.09002 * 117.50223 * 214.97897 * 27 17 16 44 44 H 1.09002 * 117.49694 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5363 0.7323 0.0005 5 7 3.5897 -0.6134 -0.0001 6 7 2.2675 -1.0665 0.0005 7 6 4.8197 -1.4053 -0.0018 8 6 5.9852 -0.5054 -0.4284 9 6 5.9682 0.7810 0.4026 10 6 4.7523 1.6263 0.0013 11 1 4.9048 2.0405 -0.9953 12 7 4.5666 2.7138 0.9653 13 16 4.0122 4.1881 0.4537 14 8 3.9837 4.9802 1.6331 15 8 4.8624 4.5240 -0.6342 16 6 2.3275 3.8594 -0.1331 17 6 1.6426 5.1817 -0.4841 18 6 2.5107 6.1991 -1.1784 19 1 3.0082 6.9665 -0.6040 20 6 2.6700 6.1501 -2.5471 21 7 2.1765 5.1410 -3.2309 22 14 3.5869 7.5172 -3.4302 23 1 4.0394 8.5287 -2.4416 24 1 4.7655 6.9493 -4.1327 25 1 2.6842 8.1607 -4.4183 26 6 0.5767 5.7033 0.4818 27 6 0.1644 5.1296 -0.8754 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 5.0054 -1.7940 0.9996 32 1 4.7208 -2.2326 -0.7045 33 1 5.8845 -0.2568 -1.4849 34 1 6.9271 -1.0297 -0.2669 35 1 6.8816 1.3463 0.2171 36 1 5.9037 0.5297 1.4612 37 1 4.7683 2.5703 1.9031 38 1 2.3684 3.2251 -1.0186 39 1 1.7621 3.3540 0.6499 40 1 2.3505 5.0685 -4.1824 41 1 0.3637 5.1047 1.3673 42 1 0.5034 6.7827 0.6151 43 1 -0.1802 5.8315 -1.6348 44 1 -0.3200 4.1532 -0.8832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329475284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = 15.461729 kcal Electronic energy + Delta-G solvation = -29434.453687 eV Core-core repulsion = 25515.541332 eV Total energy + Delta-G solvation = -3918.912355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36004 -38.65518 -38.43247 -37.81061 -36.68455 -35.99127 -34.04641 -32.90636 -32.57792 -29.87564 -29.59151 -28.79621 -27.41824 -24.78733 -23.71738 -22.90130 -21.73477 -21.39841 -20.72489 -20.18628 -18.53226 -18.20347 -18.01988 -17.36864 -17.02990 -16.76351 -16.52458 -16.07873 -15.87414 -15.36588 -15.26244 -15.13510 -14.77357 -14.06519 -14.01462 -13.78817 -13.67570 -13.55696 -13.48608 -13.09601 -13.00796 -12.97855 -12.84970 -12.80959 -12.75307 -12.40171 -12.28223 -12.18371 -12.02216 -11.91346 -11.80718 -11.51833 -10.98011 -10.91558 -10.76375 -10.65297 -10.41476 -10.25095 -9.81513 -8.16669 -6.34733 -0.39133 0.52404 1.33694 1.37038 1.41102 1.50589 1.79611 2.14717 2.42568 2.81700 3.09961 3.12920 3.30615 3.42415 3.48561 3.60976 3.78384 3.79666 3.93889 4.11606 4.20802 4.28807 4.41146 4.51676 4.57769 4.70537 4.73213 4.75096 4.82244 4.88096 4.90155 4.92235 5.01265 5.03689 5.07432 5.21488 5.30587 5.37347 5.47132 5.54848 5.66197 5.74282 5.81173 6.05966 6.29031 6.74601 7.12347 7.42039 8.89732 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.005010 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.087818 B = 5587.167529 C = 6317.684016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.203 3.797 3 N -0.551 5.551 4 C 0.246 3.754 5 N -0.367 5.367 6 N -0.334 5.334 7 C 0.114 3.886 8 C -0.128 4.128 9 C -0.125 4.125 10 C 0.225 3.775 11 H 0.110 0.890 12 N -1.100 6.100 13 S 2.626 3.374 14 O -1.004 7.004 15 O -0.984 6.984 16 C -0.515 4.515 17 C 0.015 3.985 18 C -0.555 4.555 19 H 0.047 0.953 20 C 0.059 3.941 21 N -0.881 5.881 22 Si 0.928 3.072 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.192 4.192 27 C -0.137 4.137 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.425 0.575 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.264 0.736 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -17.484 6.993 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 N -0.279 5.279 4 C -0.034 4.034 5 N -0.159 5.159 6 N -0.163 5.163 7 C -0.006 4.006 8 C -0.167 4.167 9 C -0.164 4.164 10 C 0.114 3.886 11 H 0.128 0.872 12 N -0.857 5.857 13 S 2.725 3.275 14 O -0.994 6.994 15 O -0.973 6.973 16 C -0.649 4.649 17 C 0.013 3.987 18 C -0.593 4.593 19 H 0.066 0.934 20 C -0.146 4.146 21 N -0.516 5.516 22 Si 0.753 3.247 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.194 1.194 26 C -0.229 4.229 27 C -0.176 4.176 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.261 0.739 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.019 -17.172 6.659 19.376 hybrid contribution -0.138 0.417 -0.531 0.689 sum 5.881 -16.755 6.128 18.785 Atomic orbital electron populations 1.20202 0.82317 1.04524 1.04630 1.24992 0.99532 0.85222 0.98106 1.70326 1.00812 1.31662 1.25123 1.25186 0.95580 0.85113 0.97480 1.50566 1.06258 1.05407 1.53652 1.77789 0.87612 1.22804 1.28140 1.22403 0.78058 0.94696 1.05451 1.22079 0.99096 0.94749 1.00788 1.22116 0.95995 0.95848 1.02457 1.19643 0.88759 0.85669 0.94574 0.87242 1.55573 1.83029 1.28804 1.18330 1.04280 0.77947 0.72245 0.73069 1.93431 1.88611 1.67989 1.49382 1.93466 1.65251 1.81782 1.56821 1.29622 1.19707 1.04896 1.10675 1.18427 0.89357 0.91391 0.99511 1.20760 1.31517 1.14344 0.92636 0.93442 1.25440 0.94402 0.96971 0.97810 1.70038 1.43266 1.29906 1.08397 0.85969 0.79073 0.80563 0.79092 1.19521 1.20251 1.19401 1.23166 1.06322 1.00131 0.93295 1.22379 0.98927 1.00113 0.96158 0.88498 0.89975 0.88720 0.87153 0.87291 0.90552 0.83709 0.86900 0.88354 0.73923 0.86148 0.85832 0.92649 0.88713 0.90173 0.91850 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.35 10.51 71.24 0.75 -0.61 16 2 C 0.20 6.23 8.15 138.48 1.13 7.36 16 3 N -0.55 -18.74 7.77 -179.30 -1.39 -20.13 16 4 C 0.25 7.17 7.30 138.36 1.01 8.18 16 5 N -0.37 -9.05 4.04 -338.34 -1.37 -10.42 16 6 N -0.33 -9.71 12.74 -51.07 -0.65 -10.37 16 7 C 0.11 1.49 7.30 86.52 0.63 2.12 16 8 C -0.13 -1.23 5.95 30.75 0.18 -1.05 16 9 C -0.12 -1.79 5.51 30.79 0.17 -1.62 16 10 C 0.23 5.91 3.08 44.46 0.14 6.05 16 11 H 0.11 3.29 7.50 -2.39 -0.02 3.28 16 12 N -1.10 -33.17 5.37 -171.61 -0.92 -34.09 16 13 S 2.63 114.20 4.60 -56.49 -0.26 113.94 16 14 O -1.00 -47.87 18.08 -127.65 -2.31 -50.18 16 15 O -0.98 -49.49 16.57 -127.65 -2.11 -51.61 16 16 C -0.51 -23.08 4.67 71.98 0.34 -22.74 16 17 C 0.02 0.77 1.64 -52.93 -0.09 0.68 16 18 C -0.55 -31.68 6.91 25.60 0.18 -31.50 16 19 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 20 C 0.06 3.33 5.39 84.66 0.46 3.78 16 21 N -0.88 -50.22 12.95 21.45 0.28 -49.94 16 22 Si 0.93 45.55 29.55 68.60 2.03 47.58 16 23 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 C -0.19 -8.56 9.88 30.59 0.30 -8.25 16 27 C -0.14 -6.44 9.49 30.59 0.29 -6.15 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 34 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.08 8.11 -2.39 -0.02 1.06 16 37 H 0.42 10.24 8.80 -96.75 -0.85 9.39 16 38 H 0.12 5.75 7.21 -2.39 -0.02 5.73 16 39 H 0.12 4.98 7.19 -2.39 -0.02 4.96 16 40 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 41 H 0.09 3.68 8.08 -2.39 -0.02 3.66 16 42 H 0.08 3.55 8.14 -2.38 -0.02 3.53 16 43 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -79.94 371.32 -1.05 -80.99 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.17 Total: 27.97 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 5.48 Total: -43.74 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -4.05 Total: -124.95 kcal Atomic # 8 Polarization: -97.36 SS G_CDS: -4.42 Total: -101.79 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 114.20 SS G_CDS: -0.26 Total: 113.94 kcal Total: -79.94 -1.05 -80.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329475284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.452 kcal (2) G-P(sol) polarization free energy of solvation -79.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds