Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50704 * 109.47297 * 120.00206 * 2 1 3 5 5 H 1.07993 * 120.00232 * 120.00050 * 4 2 1 6 6 C 1.37879 * 119.99536 * 300.00009 * 4 2 1 7 7 N 1.31514 * 120.00457 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99613 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47164 * 59.99988 * 8 6 4 10 10 H 1.48500 * 109.46993 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47203 * 299.99876 * 8 6 4 12 12 C 1.52999 * 109.46950 * 240.00187 * 2 1 3 13 13 S 1.81398 * 109.47190 * 60.00035 * 12 2 1 14 14 O 1.42100 * 110.54240 * 291.62339 * 13 12 2 15 15 O 1.42102 * 110.54340 * 68.37663 * 13 12 2 16 16 N 1.65600 * 104.44898 * 179.97438 * 13 12 2 17 17 C 1.47078 * 120.88321 * 269.72104 * 16 13 12 18 18 C 1.53698 * 108.27779 * 128.75392 * 17 16 13 19 19 N 1.46896 * 109.25564 * 54.08422 * 18 17 16 20 20 C 1.46903 * 110.99686 * 172.60959 * 19 18 17 21 21 C 1.53010 * 109.46644 * 201.02100 * 20 19 18 22 22 F 1.39898 * 109.47177 * 294.13803 * 21 20 19 23 23 F 1.39901 * 109.46987 * 54.13895 * 21 20 19 24 24 C 1.46894 * 111.27049 * 296.75355 * 19 18 17 25 25 C 1.47079 * 120.88152 * 89.99782 * 16 13 12 26 26 H 1.09003 * 109.47047 * 299.99762 * 1 2 3 27 27 H 1.09000 * 109.47193 * 59.99656 * 1 2 3 28 28 H 1.09000 * 109.47665 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47435 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47347 * 300.00250 * 3 2 1 31 31 H 1.09003 * 109.46945 * 60.00175 * 3 2 1 32 32 H 0.96998 * 119.99987 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47121 * 180.02562 * 12 2 1 34 34 H 1.09005 * 109.47158 * 299.99514 * 12 2 1 35 35 H 1.08998 * 109.63273 * 248.52298 * 17 16 13 36 36 H 1.09002 * 109.62528 * 9.10673 * 17 16 13 37 37 H 1.09001 * 109.64498 * 294.07854 * 18 17 16 38 38 H 1.08996 * 109.42406 * 173.95181 * 18 17 16 39 39 H 1.08997 * 109.47432 * 321.01750 * 20 19 18 40 40 H 1.09000 * 109.47602 * 81.02101 * 20 19 18 41 41 H 1.09004 * 109.46568 * 174.13967 * 21 20 19 42 42 H 1.09004 * 109.49478 * 303.14732 * 24 19 18 43 43 H 1.09002 * 109.49583 * 183.06581 * 24 19 18 44 44 H 1.08997 * 109.62994 * 350.89728 * 25 16 13 45 45 H 1.09000 * 109.62719 * 111.47966 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4200 5.2204 11 1 1.8258 -2.5202 4.0077 12 6 2.0399 -0.7212 -1.2493 13 16 1.4352 0.1340 -2.7304 14 8 0.0279 -0.0182 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0540 -0.7399 -3.9936 17 6 3.3637 -0.4054 -4.5732 18 6 4.2101 -1.6873 -4.6239 19 7 3.4642 -2.7322 -5.3379 20 6 4.3028 -3.9172 -5.5628 21 6 3.7235 -4.7407 -6.7149 22 9 2.4779 -5.2556 -6.3399 23 9 3.5709 -3.9245 -7.8409 24 6 2.2305 -3.0882 -4.6246 25 6 1.3057 -1.8674 -4.5698 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.7095 1.1618 3.4845 33 1 3.1299 -0.7216 -1.2491 34 1 1.6766 -1.7489 -1.2493 35 1 3.2287 -0.0120 -5.5807 36 1 3.8605 0.3384 -3.9502 37 1 4.4270 -2.0236 -3.6101 38 1 5.1440 -1.4846 -5.1480 39 1 5.3158 -3.6031 -5.8142 40 1 4.3248 -4.5240 -4.6576 41 1 4.4002 -5.5621 -6.9505 42 1 2.4750 -3.4050 -3.6107 43 1 1.7287 -3.9014 -5.1491 44 1 0.4412 -2.0907 -3.9447 45 1 0.9766 -1.6119 -5.5770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331332433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = -160.052712 kcal Electronic energy + Delta-G solvation = -29765.878391 eV Core-core repulsion = 25388.665973 eV Total energy + Delta-G solvation = -4377.212418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14772 -47.13829 -39.06355 -36.62688 -36.29797 -35.37746 -34.88506 -31.68845 -31.25657 -30.09282 -26.73939 -25.77505 -25.73820 -25.24398 -23.97171 -22.56553 -20.79730 -19.36025 -18.60568 -17.85565 -17.56242 -17.33350 -16.64359 -16.00901 -15.87495 -15.47714 -15.26571 -15.06916 -14.72360 -14.54490 -14.42150 -14.17949 -13.74993 -13.48715 -13.21235 -13.04893 -12.82572 -12.70934 -12.52843 -12.29953 -12.19870 -11.98898 -11.74585 -11.51718 -11.33008 -11.19090 -11.08637 -11.04383 -10.96331 -10.71721 -10.67969 -10.39825 -10.29308 -10.12695 -9.67696 -9.60332 -9.07630 -8.71843 -8.54961 -8.42511 -6.05758 -4.18129 0.80653 3.03320 3.24203 3.30144 3.31192 3.33752 3.61274 3.95577 4.17333 4.31105 4.39277 4.52619 4.58150 4.63732 4.91325 4.95240 5.01407 5.17448 5.18814 5.19201 5.28238 5.33086 5.47214 5.60055 5.65726 5.68826 5.83662 5.97851 6.04412 6.34892 6.61271 6.63618 6.67875 6.69503 6.77503 6.88700 7.02315 7.28930 7.48061 7.64927 7.95803 8.06991 8.30482 8.79932 9.47280 10.95494 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003326 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.165320 B = 8417.475834 C = 9202.275787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.593 3.407 14 O -0.960 6.960 15 O -0.961 6.961 16 N -1.012 6.012 17 C 0.128 3.872 18 C 0.040 3.960 19 N -0.530 5.530 20 C 0.000 4.000 21 C 0.270 3.730 22 F -0.205 7.205 23 F -0.196 7.196 24 C 0.023 3.977 25 C 0.129 3.871 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.028 0.972 31 H 0.095 0.905 32 H 0.263 0.737 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.044 0.956 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 -10.287 -16.742 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.692 3.308 14 O -0.951 6.951 15 O -0.951 6.951 16 N -0.848 5.848 17 C 0.002 3.998 18 C -0.089 4.089 19 N -0.255 5.255 20 C -0.130 4.130 21 C 0.216 3.784 22 F -0.186 7.186 23 F -0.177 7.177 24 C -0.106 4.106 25 C 0.003 3.997 26 H 0.114 0.886 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.062 0.938 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.077 -9.168 -17.200 20.736 hybrid contribution 0.951 -1.438 1.889 2.557 sum 8.028 -10.606 -15.311 20.282 Atomic orbital electron populations 1.22269 0.96887 1.00599 1.02339 1.17925 0.92840 0.92196 0.89037 1.22268 0.99645 0.97817 1.02344 1.20888 1.31828 1.12082 0.89436 0.92485 1.24935 0.94872 0.94973 0.98903 1.69788 1.36199 1.22513 1.23618 0.86601 0.79114 0.79722 0.82201 1.20307 1.21126 1.20288 1.30580 1.11023 1.12717 1.17154 1.05763 0.74712 0.75079 0.75265 1.93537 1.29361 1.86516 1.85662 1.93533 1.78146 1.37778 1.85689 1.58132 1.29433 1.47149 1.50113 1.21511 0.82349 0.95535 1.00357 1.22662 0.96745 0.92281 0.97216 1.61820 1.05737 1.08312 1.49633 1.23251 0.98560 0.93486 0.97665 1.21971 0.82397 0.90451 0.83586 1.92904 1.46530 1.87642 1.91537 1.93004 1.96165 1.75143 1.53377 1.22948 0.91245 0.98965 0.97457 1.21414 0.93453 0.84464 1.00320 0.88643 0.95364 0.94515 0.94538 0.95368 0.88639 0.92646 0.86698 0.86676 0.90477 0.88620 0.93656 0.89461 0.87791 0.91289 0.87202 0.93762 0.87939 0.88671 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.00 7.77 37.16 0.29 -3.71 16 4 C -0.50 -13.13 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.04 9.35 55.43 0.52 -23.52 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C -0.58 -11.28 5.12 37.16 0.19 -11.09 16 13 S 2.59 48.55 4.45 -107.50 -0.48 48.08 16 14 O -0.96 -20.28 14.41 -57.54 -0.83 -21.11 16 15 O -0.96 -20.09 14.40 -57.54 -0.83 -20.92 16 16 N -1.01 -14.63 3.25 -112.97 -0.37 -15.00 16 17 C 0.13 1.55 6.50 -3.36 -0.02 1.53 16 18 C 0.04 0.39 5.60 -3.46 -0.02 0.37 16 19 N -0.53 -5.23 4.37 -234.02 -1.02 -6.26 16 20 C 0.00 0.00 5.39 -3.82 -0.02 -0.02 16 21 C 0.27 1.88 5.59 37.16 0.21 2.09 16 22 F -0.20 -1.89 14.67 2.25 0.03 -1.86 16 23 F -0.20 -1.93 17.15 2.25 0.04 -1.89 16 24 C 0.02 0.25 5.40 -3.70 -0.02 0.23 16 25 C 0.13 1.66 6.46 -3.60 -0.02 1.63 16 26 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 27 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 31 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.11 2.05 8.14 -51.92 -0.42 1.62 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.15 7.18 -51.93 -0.37 0.78 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.64 7.89 -51.93 -0.41 0.23 16 39 H 0.10 0.51 7.75 -51.93 -0.40 0.11 16 40 H 0.07 0.42 7.98 -51.93 -0.41 0.01 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.05 5.42 -51.93 -0.28 0.77 16 44 H 0.10 1.23 7.19 -51.93 -0.37 0.86 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -32.57 358.02 -8.94 -41.51 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.80 Total: 2.70 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 0.42 Total: -22.59 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.87 Total: -44.78 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.66 Total: -42.03 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.75 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 48.55 SS G_CDS: -0.48 Total: 48.08 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.57 -8.94 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331332433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.546 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds