Wall clock time and date at job start Sat Apr 11 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20761 * 119.99748 * 2 1 4 4 C 1.50697 * 120.00464 * 179.72475 * 2 1 3 5 5 H 1.08996 * 109.47010 * 320.13626 * 4 2 1 6 6 N 1.46494 * 109.47220 * 200.13014 * 4 2 1 7 7 C 1.34778 * 119.99595 * 85.00326 * 6 4 2 8 8 O 1.21281 * 120.00461 * 359.97438 * 7 6 4 9 9 C 1.50705 * 119.99906 * 179.97438 * 7 6 4 10 10 S 1.80992 * 109.47313 * 179.97438 * 9 7 6 11 11 C 1.76203 * 100.00234 * 179.97438 * 10 9 7 12 12 N 1.32382 * 126.25680 * 0.02612 * 11 10 9 13 13 N 1.28516 * 110.20660 * 179.97438 * 12 11 10 14 14 C 1.33104 * 109.73951 * 0.02562 * 13 12 11 15 15 C 1.39775 * 126.55643 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99448 * 179.97438 * 15 14 13 17 17 C 1.40079 * 120.00752 * 359.97296 * 15 14 13 18 18 N 1.30816 * 119.99473 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00287 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47134 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47126 * 119.99987 * 19 17 15 22 22 H 1.48497 * 109.46646 * 239.99706 * 19 17 15 23 23 N 1.36667 * 126.25771 * 179.71678 * 11 10 9 24 24 C 1.46499 * 127.15666 * 359.96458 * 23 11 10 25 25 C 1.53006 * 109.46878 * 80.13142 * 4 2 1 26 26 C 1.52993 * 109.46990 * 61.88258 * 25 4 2 27 27 C 1.52995 * 109.46844 * 181.88344 * 25 4 2 28 28 H 1.09004 * 109.46791 * 244.93121 * 1 2 3 29 29 H 1.09001 * 109.47749 * 4.93147 * 1 2 3 30 30 H 1.09006 * 109.47053 * 124.93302 * 1 2 3 31 31 H 0.97001 * 120.00393 * 264.99982 * 6 4 2 32 32 H 1.09000 * 109.46964 * 300.00323 * 9 7 6 33 33 H 1.09004 * 109.47070 * 59.99990 * 9 7 6 34 34 H 0.97006 * 119.99854 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.46710 * 90.02267 * 24 23 11 36 36 H 1.08997 * 109.47508 * 210.02660 * 24 23 11 37 37 H 1.08998 * 109.46792 * 330.03403 * 24 23 11 38 38 H 1.09004 * 109.47012 * 301.88283 * 25 4 2 39 39 H 1.09003 * 109.46929 * 179.97438 * 26 25 4 40 40 H 1.08994 * 109.47536 * 300.00201 * 26 25 4 41 41 H 1.09004 * 109.47223 * 60.00153 * 26 25 4 42 42 H 1.09006 * 109.47490 * 54.82217 * 27 25 4 43 43 H 1.09006 * 109.47054 * 174.81528 * 27 25 4 44 44 H 1.09003 * 109.47422 * 294.81880 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0063 5 1 1.7592 -2.0109 0.6683 6 7 3.6278 -1.0771 0.4805 7 6 3.8897 -1.0682 1.8026 8 8 2.9935 -1.2484 2.5996 9 6 5.2963 -0.8344 2.2905 10 16 5.3227 -0.8798 4.0997 11 6 7.0362 -0.5873 4.3881 12 7 7.9647 -0.3984 3.4637 13 7 9.1100 -0.2124 4.0163 14 6 8.9853 -0.2717 5.3401 15 6 10.0080 -0.1178 6.2804 16 1 9.7864 -0.1862 7.3352 17 6 11.3202 0.1252 5.8547 18 7 11.5886 0.2075 4.5770 19 14 12.6870 0.3302 7.1114 20 1 12.1261 0.1934 8.4795 21 1 13.7208 -0.7133 6.8931 22 1 13.3006 1.6740 6.9604 23 7 7.6486 -0.5081 5.6074 24 6 7.0206 -0.6469 6.9236 25 6 2.3015 -1.8771 -1.4122 26 6 3.0464 -0.9075 -2.3318 27 6 3.0257 -3.2247 -1.3979 28 1 -0.3633 -0.4355 0.9309 29 1 -0.3634 1.0238 -0.0883 30 1 -0.3633 -0.5885 -0.8425 31 1 4.3446 -0.9327 -0.1569 32 1 5.9512 -1.6120 1.8975 33 1 5.6428 0.1403 1.9468 34 1 12.4973 0.3761 4.2822 35 1 7.0414 -1.6935 7.2275 36 1 7.5660 -0.0463 7.6516 37 1 5.9872 -0.3044 6.8711 38 1 1.2839 -2.0153 -1.7777 39 1 3.0760 -1.3153 -3.3423 40 1 2.5305 0.0526 -2.3420 41 1 4.0640 -0.7693 -1.9663 42 1 2.5494 -3.8856 -0.6736 43 1 2.9747 -3.6752 -2.3892 44 1 4.0690 -3.0736 -1.1207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357097289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:54 Heat of formation + Delta-G solvation = -34.952414 kcal Electronic energy + Delta-G solvation = -26768.926100 eV Core-core repulsion = 22847.827624 eV Total energy + Delta-G solvation = -3921.098476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.46609 -41.67071 -39.95732 -37.52413 -35.63250 -35.16552 -34.25988 -31.77561 -31.40167 -30.90479 -28.26473 -28.10838 -27.56061 -27.25069 -22.83441 -22.67139 -22.02019 -21.95961 -20.32527 -19.30020 -18.57228 -18.02977 -17.48835 -17.28874 -17.07658 -16.62656 -16.25406 -16.16470 -16.04654 -15.58185 -15.37909 -15.13248 -14.93444 -14.46402 -14.22612 -14.04694 -13.83236 -13.81137 -13.46847 -13.20045 -13.13035 -13.04319 -12.96665 -12.92813 -12.78303 -12.22518 -12.02165 -11.89816 -11.88233 -11.81992 -11.68165 -11.47634 -11.35240 -11.19390 -10.59727 -10.39066 -10.30563 -9.99648 -8.56795 -8.55137 -6.59022 0.25061 0.91956 1.12344 1.17874 1.31781 1.42060 1.59997 1.60102 1.99841 2.18525 2.43329 2.49684 3.05088 3.33319 3.49671 3.64869 3.87772 3.96089 4.01639 4.07348 4.19310 4.31433 4.44624 4.45190 4.51481 4.61272 4.61372 4.69491 4.79231 4.86300 4.90471 4.95124 4.96603 5.09880 5.12424 5.26474 5.31550 5.33956 5.41667 5.55932 6.01318 6.19040 6.21663 6.50370 6.75267 6.90971 6.91501 8.40658 8.61947 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.002278 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.586457 B =12287.443473 C =12833.888051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.341 3.659 3 O -0.492 6.492 4 C 0.096 3.904 5 H 0.124 0.876 6 N -0.697 5.697 7 C 0.546 3.454 8 O -0.555 6.555 9 C -0.132 4.132 10 S 0.047 5.953 11 C 0.043 3.957 12 N -0.327 5.327 13 N -0.386 5.386 14 C 0.317 3.683 15 C -0.470 4.470 16 H 0.103 0.897 17 C 0.028 3.972 18 N -0.787 5.787 19 Si 1.007 2.993 20 H -0.246 1.246 21 H -0.267 1.267 22 H -0.268 1.268 23 N -0.520 5.520 24 C 0.092 3.908 25 C -0.084 4.084 26 C -0.158 4.158 27 C -0.148 4.148 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.414 0.586 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.285 0.715 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.943 -6.182 -9.821 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.217 3.783 3 O -0.367 6.367 4 C -0.010 4.010 5 H 0.142 0.858 6 N -0.350 5.350 7 C 0.331 3.669 8 O -0.433 6.433 9 C -0.284 4.284 10 S 0.272 5.728 11 C -0.331 4.331 12 N -0.172 5.172 13 N -0.233 5.233 14 C 0.071 3.929 15 C -0.510 4.510 16 H 0.121 0.879 17 C -0.193 4.193 18 N -0.412 5.412 19 Si 0.826 3.174 20 H -0.169 1.169 21 H -0.191 1.191 22 H -0.193 1.193 23 N -0.221 5.221 24 C -0.050 4.050 25 C -0.103 4.103 26 C -0.216 4.216 27 C -0.205 4.205 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.146 0.854 31 H 0.253 0.747 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.393 -5.759 -10.083 23.467 hybrid contribution 1.776 0.489 0.511 1.912 sum -18.617 -5.269 -9.572 21.587 Atomic orbital electron populations 1.22370 0.91028 1.05684 1.06655 1.25718 0.94023 0.89987 0.68529 1.90430 1.73164 1.36165 1.36931 1.21906 0.82628 0.96769 0.99703 0.85829 1.45657 1.11161 1.72325 1.05899 1.19597 0.88587 0.75534 0.83224 1.90692 1.47321 1.50284 1.55036 1.23438 0.98764 1.08818 0.97335 1.84917 0.92303 1.91793 1.03826 1.26568 1.01549 1.18764 0.86206 1.74380 0.96962 1.17931 1.27891 1.75295 1.12532 1.31118 1.04344 1.22072 0.82237 0.95383 0.93255 1.18653 0.90904 1.48067 0.93342 0.87890 1.26993 1.01989 0.92090 0.98178 1.70160 1.22278 1.31237 1.17550 0.84796 0.75946 0.78633 0.78027 1.16861 1.19138 1.19252 1.46338 1.07629 1.61700 1.06475 1.21861 0.98602 1.03283 0.81286 1.21353 1.03462 0.95798 0.89656 1.21957 1.00144 0.98759 1.00714 1.21849 1.00196 0.95189 1.03252 0.87564 0.90408 0.85415 0.74743 0.85547 0.86685 0.90509 0.90608 0.89138 0.89387 0.85901 0.89872 0.93441 0.93173 0.91934 0.90364 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 10.25 71.24 0.73 -1.38 16 2 C 0.34 6.42 5.41 29.10 0.16 6.58 16 3 O -0.49 -13.81 17.00 -1.45 -0.02 -13.83 16 4 C 0.10 1.52 2.03 44.25 0.09 1.61 16 5 H 0.12 1.89 7.58 -2.39 -0.02 1.87 16 6 N -0.70 -14.85 4.00 -446.10 -1.78 -16.64 16 7 C 0.55 15.77 7.80 87.66 0.68 16.45 16 8 O -0.55 -18.65 15.53 -3.03 -0.05 -18.70 16 9 C -0.13 -4.33 5.71 71.24 0.41 -3.92 16 10 S 0.05 1.80 20.92 -56.49 -1.18 0.62 16 11 C 0.04 2.12 8.09 179.18 1.45 3.57 16 12 N -0.33 -18.55 11.62 -56.18 -0.65 -19.20 16 13 N -0.39 -24.28 10.48 -55.02 -0.58 -24.86 16 14 C 0.32 18.35 7.53 133.23 1.00 19.35 16 15 C -0.47 -25.33 9.04 23.09 0.21 -25.12 16 16 H 0.10 4.94 7.31 -2.91 -0.02 4.91 16 17 C 0.03 1.46 5.50 85.29 0.47 1.93 16 18 N -0.79 -44.76 11.94 21.85 0.26 -44.50 16 19 Si 1.01 37.96 29.56 68.60 2.03 39.99 16 20 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 23 N -0.52 -25.78 3.26 -543.63 -1.77 -27.55 16 24 C 0.09 3.36 10.87 127.77 1.39 4.75 16 25 C -0.08 -0.77 2.75 -10.80 -0.03 -0.80 16 26 C -0.16 -1.78 8.78 71.98 0.63 -1.15 16 27 C -0.15 -1.37 8.98 71.98 0.65 -0.72 16 28 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 30 H 0.13 0.40 8.03 -2.38 -0.02 0.38 16 31 H 0.41 7.69 6.67 -92.71 -0.62 7.07 16 32 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 34 H 0.28 14.54 8.30 -92.70 -0.77 13.77 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.09 3.06 7.53 -2.39 -0.02 3.04 16 37 H 0.09 2.81 7.85 -2.39 -0.02 2.79 16 38 H 0.12 0.43 8.03 -2.38 -0.02 0.41 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 40 H 0.05 0.66 7.06 -2.39 -0.02 0.65 16 41 H 0.05 0.66 6.42 -2.38 -0.02 0.65 16 42 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.08 0.51 8.14 -2.38 -0.02 0.50 16 44 H 0.05 0.59 7.74 -2.39 -0.02 0.57 16 Total: -1.00 -83.89 385.99 4.50 -79.38 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.41 Total: 24.14 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 7.84 Total: 21.14 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -4.52 Total: -132.74 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.07 Total: -32.53 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.18 Total: 0.62 kcal Total: -83.89 4.50 -79.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357097289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.431 kcal (2) G-P(sol) polarization free energy of solvation -83.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds