Wall clock time and date at job start Sat Apr 11 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46856 * 2 1 4 4 C 1.52999 * 109.46969 * 240.00380 * 2 1 3 5 5 C 1.50699 * 109.47622 * 59.99709 * 4 2 1 6 6 H 1.08006 * 119.99456 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00228 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46855 * 120.00436 * 9 7 5 12 12 H 1.48495 * 109.47362 * 240.00537 * 9 7 5 13 13 C 1.53002 * 109.47470 * 120.00228 * 2 1 3 14 14 N 1.46500 * 109.46741 * 299.99939 * 13 2 1 15 15 C 1.34782 * 119.99656 * 179.97438 * 14 13 2 16 16 O 1.21351 * 119.99874 * 359.97438 * 15 14 13 17 17 C 1.49354 * 119.99859 * 180.02562 * 15 14 13 18 18 O 1.21379 * 119.99868 * 0.02562 * 17 15 14 19 19 N 1.34772 * 120.00280 * 180.02562 * 17 15 14 20 20 C 1.39715 * 120.00415 * 184.61482 * 19 17 15 21 21 C 1.38903 * 120.05000 * 144.89808 * 20 19 17 22 22 C 1.38329 * 119.94600 * 179.97438 * 21 20 19 23 23 F 1.35109 * 119.97254 * 179.97438 * 22 21 20 24 24 C 1.38480 * 120.05429 * 359.97438 * 22 21 20 25 25 C 1.38484 * 120.09988 * 359.97438 * 24 22 21 26 26 F 1.35096 * 119.97572 * 179.97438 * 25 24 22 27 27 C 1.38329 * 120.04995 * 0.02562 * 25 24 22 28 28 H 1.08997 * 109.47363 * 299.99214 * 1 2 3 29 29 H 1.09000 * 109.47460 * 60.00048 * 1 2 3 30 30 H 1.09004 * 109.46397 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47289 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47513 * 299.99950 * 3 2 1 33 33 H 1.09001 * 109.47314 * 59.99909 * 3 2 1 34 34 H 1.09011 * 109.46766 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47439 * 299.99212 * 4 2 1 36 36 H 0.97004 * 119.99865 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.46911 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.46804 * 60.00194 * 13 2 1 39 39 H 0.97001 * 120.00627 * 0.02562 * 14 13 2 40 40 H 0.97006 * 119.99608 * 4.61268 * 19 17 15 41 41 H 1.07997 * 120.03019 * 359.69691 * 21 20 19 42 42 H 1.07998 * 119.95257 * 180.02562 * 24 22 21 43 43 H 1.07997 * 120.02794 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2478 0.3987 -5.2572 10 1 0.4224 1.5651 -4.8530 11 1 2.4025 0.8663 -6.0655 12 1 0.4234 -0.5352 -6.0656 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4915 3.6695 16 8 2.5739 -1.4787 3.7807 17 6 1.3787 0.2122 4.8890 18 8 0.6805 1.1988 4.7776 19 7 1.7043 -0.2482 6.1131 20 6 1.1608 0.3509 7.2522 21 6 0.8523 -0.4218 8.3645 22 6 0.3148 0.1737 9.4914 23 9 0.0140 -0.5774 10.5734 24 6 0.0847 1.5391 9.5114 25 6 0.3924 2.3116 8.4041 26 9 0.1664 3.6434 8.4261 27 6 0.9302 1.7205 7.2749 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1301 -0.7207 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 2.8616 -1.8822 -4.7337 37 1 3.1300 -0.7208 1.2493 38 1 1.6768 -1.7489 1.2491 39 1 0.9938 0.7578 2.3565 40 1 2.3161 -0.9956 6.2032 41 1 1.0278 -1.4872 8.3479 42 1 -0.3347 2.0024 10.3923 43 1 1.1697 2.3232 6.4114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357999901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:02 Heat of formation + Delta-G solvation = -141.895379 kcal Electronic energy + Delta-G solvation = -28425.800722 eV Core-core repulsion = 23913.931714 eV Total energy + Delta-G solvation = -4511.869009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.48623 -49.40716 -41.42385 -39.68924 -38.40565 -37.31415 -35.42171 -33.76252 -32.16813 -30.87511 -30.47710 -27.51010 -26.89332 -26.58839 -25.12154 -23.57748 -23.22550 -22.27399 -20.62833 -19.57217 -18.90370 -17.89586 -17.42971 -17.14292 -16.84034 -16.48422 -16.38630 -16.24519 -16.04205 -15.81928 -15.73522 -15.27693 -14.74205 -14.58736 -14.53822 -14.13130 -13.65444 -13.40696 -13.22039 -12.87372 -12.71070 -12.59504 -12.44774 -12.28200 -12.12368 -11.76427 -11.26450 -11.07873 -10.90952 -10.87943 -10.71302 -10.52113 -10.31211 -9.98145 -9.95457 -9.29807 -9.25599 -9.11719 -8.99611 -8.95552 -8.41415 -6.05405 -4.06726 0.28719 0.46145 1.17844 1.90022 2.75767 3.01588 3.18613 3.27278 3.35788 3.38204 3.52296 3.84799 4.20694 4.31678 4.33372 4.41394 4.47628 4.69075 5.29368 5.30209 5.30267 5.31434 5.44743 5.47408 5.57469 5.63973 5.65174 6.03839 6.06479 6.09996 6.22977 6.26583 6.27371 6.49334 6.56127 6.60504 6.96348 6.99478 7.01520 7.11372 7.39670 7.56370 7.67267 7.83174 7.92933 8.34240 8.97993 9.56909 11.05986 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026866 B = 0.001900 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.954539 B =14731.892500 C =15397.449479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.131 4.131 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.124 3.876 14 N -0.681 5.681 15 C 0.503 3.497 16 O -0.520 6.520 17 C 0.512 3.488 18 O -0.492 6.492 19 N -0.647 5.647 20 C 0.206 3.794 21 C -0.188 4.188 22 C 0.152 3.848 23 F -0.127 7.127 24 C -0.206 4.206 25 C 0.153 3.847 26 F -0.125 7.125 27 C -0.169 4.169 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.430 0.570 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 4.302 26.329 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.334 5.334 15 C 0.282 3.718 16 O -0.397 6.397 17 C 0.295 3.705 18 O -0.365 6.365 19 N -0.295 5.295 20 C 0.110 3.890 21 C -0.209 4.209 22 C 0.132 3.868 23 F -0.105 7.105 24 C -0.227 4.227 25 C 0.133 3.867 26 F -0.103 7.103 27 C -0.190 4.190 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.269 0.731 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.075 4.186 26.108 26.620 hybrid contribution -0.360 0.444 -0.701 0.905 sum -3.435 4.631 25.407 26.053 Atomic orbital electron populations 1.21800 0.95031 1.01338 1.00619 1.20947 0.95714 0.96006 0.94672 1.21799 1.00624 0.95736 1.00621 1.19104 0.96421 0.95251 0.89339 1.21204 1.31224 1.12124 0.90422 0.92126 1.25016 0.95282 0.95087 0.99152 1.69968 1.36932 1.23022 1.23411 0.86577 0.78620 0.79685 0.83354 1.19767 1.21125 1.21119 1.21913 0.99469 0.96332 0.82099 1.46090 1.50833 1.31568 1.04898 1.19597 0.82496 0.85221 0.84478 1.90794 1.37164 1.25324 1.86453 1.20690 0.80535 0.84618 0.84703 1.90792 1.35171 1.24080 1.86434 1.43137 1.46697 1.36313 1.03309 1.16966 0.95255 0.90584 0.86197 1.20888 1.05660 1.01481 0.92877 1.16801 0.98150 0.88132 0.83755 1.91562 1.90698 1.75801 1.52448 1.21038 1.08162 0.92852 1.00600 1.16968 0.98198 0.77850 0.93719 1.91562 1.92053 1.29964 1.96764 1.21324 1.04030 0.94212 0.99417 0.95068 0.91131 0.93208 0.93203 0.91130 0.95072 0.96218 0.96217 0.93053 0.90836 0.90849 0.74998 0.73093 0.83203 0.83143 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.15 7.65 -34.44 -0.26 -13.41 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.12 1.96 4.56 -4.04 -0.02 1.95 16 14 N -0.68 -9.19 4.95 -60.76 -0.30 -9.49 16 15 C 0.50 6.55 7.89 -11.63 -0.09 6.46 16 16 O -0.52 -7.76 16.48 5.50 0.09 -7.67 16 17 C 0.51 5.73 7.73 -11.63 -0.09 5.64 16 18 O -0.49 -6.27 13.91 5.47 0.08 -6.19 16 19 N -0.65 -5.59 5.32 -10.31 -0.05 -5.64 16 20 C 0.21 1.74 6.29 -83.77 -0.53 1.22 16 21 C -0.19 -1.32 9.94 -39.30 -0.39 -1.71 16 22 C 0.15 1.13 7.29 -39.46 -0.29 0.84 16 23 F -0.13 -1.00 17.27 2.25 0.04 -0.96 16 24 C -0.21 -1.52 10.00 -39.40 -0.39 -1.91 16 25 C 0.15 1.33 7.29 -39.46 -0.29 1.05 16 26 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 27 C -0.17 -1.58 8.67 -39.30 -0.34 -1.92 16 28 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 29 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 33 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 34 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.41 5.21 5.63 -40.82 -0.23 4.98 16 40 H 0.43 2.93 8.30 -40.82 -0.34 2.59 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.16 1.67 6.22 -52.49 -0.33 1.34 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -29.38 368.87 -6.33 -35.72 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.11 Total: 3.87 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.39 Total: -4.82 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.38 Total: -40.12 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.17 Total: -13.86 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.08 Total: -2.11 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.38 -6.33 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357999901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.180 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds