Wall clock time and date at job start Sat Apr 11 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46856 * 2 1 4 4 C 1.52999 * 109.46969 * 240.00380 * 2 1 3 5 5 C 1.50699 * 109.47622 * 59.99709 * 4 2 1 6 6 H 1.08006 * 119.99456 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00228 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46855 * 120.00436 * 9 7 5 12 12 H 1.48495 * 109.47362 * 240.00537 * 9 7 5 13 13 C 1.53002 * 109.47470 * 120.00228 * 2 1 3 14 14 N 1.46500 * 109.46741 * 299.99939 * 13 2 1 15 15 C 1.34782 * 119.99656 * 179.97438 * 14 13 2 16 16 O 1.21351 * 119.99874 * 359.97438 * 15 14 13 17 17 C 1.49354 * 119.99859 * 180.02562 * 15 14 13 18 18 O 1.21379 * 119.99868 * 0.02562 * 17 15 14 19 19 N 1.34772 * 120.00280 * 180.02562 * 17 15 14 20 20 C 1.39715 * 120.00415 * 184.61482 * 19 17 15 21 21 C 1.38903 * 120.05000 * 144.89808 * 20 19 17 22 22 C 1.38329 * 119.94600 * 179.97438 * 21 20 19 23 23 F 1.35109 * 119.97254 * 179.97438 * 22 21 20 24 24 C 1.38480 * 120.05429 * 359.97438 * 22 21 20 25 25 C 1.38484 * 120.09988 * 359.97438 * 24 22 21 26 26 F 1.35096 * 119.97572 * 179.97438 * 25 24 22 27 27 C 1.38329 * 120.04995 * 0.02562 * 25 24 22 28 28 H 1.08997 * 109.47363 * 299.99214 * 1 2 3 29 29 H 1.09000 * 109.47460 * 60.00048 * 1 2 3 30 30 H 1.09004 * 109.46397 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47289 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47513 * 299.99950 * 3 2 1 33 33 H 1.09001 * 109.47314 * 59.99909 * 3 2 1 34 34 H 1.09011 * 109.46766 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47439 * 299.99212 * 4 2 1 36 36 H 0.97004 * 119.99865 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.46911 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.46804 * 60.00194 * 13 2 1 39 39 H 0.97001 * 120.00627 * 0.02562 * 14 13 2 40 40 H 0.97006 * 119.99608 * 4.61268 * 19 17 15 41 41 H 1.07997 * 120.03019 * 359.69691 * 21 20 19 42 42 H 1.07998 * 119.95257 * 180.02562 * 24 22 21 43 43 H 1.07997 * 120.02794 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2478 0.3987 -5.2572 10 1 0.4224 1.5651 -4.8530 11 1 2.4025 0.8663 -6.0655 12 1 0.4234 -0.5352 -6.0656 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4915 3.6695 16 8 2.5739 -1.4787 3.7807 17 6 1.3787 0.2122 4.8890 18 8 0.6805 1.1988 4.7776 19 7 1.7043 -0.2482 6.1131 20 6 1.1608 0.3509 7.2522 21 6 0.8523 -0.4218 8.3645 22 6 0.3148 0.1737 9.4914 23 9 0.0140 -0.5774 10.5734 24 6 0.0847 1.5391 9.5114 25 6 0.3924 2.3116 8.4041 26 9 0.1664 3.6434 8.4261 27 6 0.9302 1.7205 7.2749 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1301 -0.7207 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 2.8616 -1.8822 -4.7337 37 1 3.1300 -0.7208 1.2493 38 1 1.6768 -1.7489 1.2491 39 1 0.9938 0.7578 2.3565 40 1 2.3161 -0.9956 6.2032 41 1 1.0278 -1.4872 8.3479 42 1 -0.3347 2.0024 10.3923 43 1 1.1697 2.3232 6.4114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357999901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:02 Heat of formation + Delta-G solvation = -159.624668 kcal Electronic energy + Delta-G solvation = -28426.569522 eV Core-core repulsion = 23913.931714 eV Total energy + Delta-G solvation = -4512.637808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.09844 -50.07309 -42.30736 -40.65820 -39.27652 -38.67793 -36.25475 -35.21221 -33.94495 -31.50117 -31.16765 -29.22754 -28.24726 -27.97449 -26.23731 -24.80588 -24.14805 -23.30878 -21.59905 -20.58672 -19.78884 -19.10693 -18.35118 -18.24218 -17.89510 -17.58239 -17.20276 -17.01273 -16.86957 -16.71416 -16.46754 -16.38017 -16.25980 -15.73037 -15.41061 -15.25556 -14.89668 -14.75337 -14.38445 -14.12919 -13.94211 -13.77747 -13.38544 -13.34590 -13.01191 -12.90192 -12.74662 -12.63517 -12.61944 -12.33754 -12.23872 -11.96914 -11.61634 -11.55357 -11.14983 -10.89325 -10.76968 -10.50488 -10.30638 -9.90552 -9.62350 -8.13360 -6.19920 -0.40817 -0.16656 0.29011 1.00802 1.41919 1.44123 1.54842 1.90255 2.26352 2.31050 2.45599 2.83860 3.18591 3.21673 3.25765 3.73340 3.75826 3.85358 3.90606 4.04787 4.06106 4.20441 4.65258 4.66410 4.68529 4.69984 4.72052 4.86926 4.90887 4.94844 4.96883 4.99883 5.12592 5.22931 5.42388 5.51483 5.53120 5.57153 5.60966 5.71454 5.80042 5.91466 6.16955 6.33207 6.49100 6.78134 6.95161 7.47546 8.98941 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026866 B = 0.001900 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.954539 B =14731.892500 C =15397.449479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.126 4.126 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.070 0.930 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.137 3.863 14 N -0.677 5.677 15 C 0.508 3.492 16 O -0.539 6.539 17 C 0.521 3.479 18 O -0.508 6.508 19 N -0.632 5.632 20 C 0.194 3.806 21 C -0.172 4.172 22 C 0.149 3.851 23 F -0.127 7.127 24 C -0.195 4.195 25 C 0.141 3.859 26 F -0.133 7.133 27 C -0.177 4.177 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.064 0.936 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.439 0.561 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 5.193 28.173 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.183 4.183 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.088 0.912 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.014 3.986 14 N -0.330 5.330 15 C 0.288 3.712 16 O -0.417 6.417 17 C 0.303 3.697 18 O -0.382 6.382 19 N -0.280 5.280 20 C 0.099 3.901 21 C -0.193 4.193 22 C 0.128 3.872 23 F -0.105 7.105 24 C -0.215 4.215 25 C 0.121 3.879 26 F -0.111 7.111 27 C -0.198 4.198 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.258 0.742 40 H 0.280 0.720 41 H 0.191 0.809 42 H 0.186 0.814 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.153 5.089 27.992 28.752 hybrid contribution -0.013 0.136 -1.154 1.162 sum -4.165 5.225 26.838 27.657 Atomic orbital electron populations 1.21736 0.93833 1.01262 1.01489 1.20733 0.96571 0.96278 0.93034 1.21735 1.00292 0.94794 1.01502 1.18971 0.94619 0.94337 0.91789 1.21619 1.30248 1.11992 0.91157 0.91184 1.25890 0.95767 0.95907 1.02547 1.70106 1.38764 1.24854 1.23978 0.85540 0.78022 0.78811 0.79525 1.18326 1.21135 1.21127 1.21521 0.98905 0.95836 0.82352 1.45875 1.51066 1.31664 1.04438 1.19847 0.81772 0.84809 0.84780 1.90791 1.37918 1.26211 1.86792 1.20184 0.80506 0.84302 0.84737 1.90801 1.36116 1.24683 1.86590 1.42969 1.46287 1.36147 1.02586 1.16969 0.96251 0.90411 0.86453 1.21058 1.03941 1.02468 0.91855 1.16830 0.98330 0.88147 0.83855 1.91569 1.90721 1.75781 1.52469 1.21207 1.06887 0.92828 1.00603 1.17017 0.99042 0.77700 0.94113 1.91542 1.92233 1.30528 1.96823 1.21297 1.04474 0.94678 0.99336 0.91775 0.92593 0.93804 0.93776 0.92599 0.91750 0.98954 0.98963 0.93199 0.91608 0.91650 0.74224 0.71970 0.80950 0.81365 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.05 71.98 0.58 -3.51 16 2 C -0.07 -2.33 0.54 -52.18 -0.03 -2.35 16 3 C -0.13 -4.08 8.05 71.98 0.58 -3.50 16 4 C 0.04 1.94 4.04 29.85 0.12 2.06 16 5 C -0.51 -26.61 7.65 25.60 0.20 -26.42 16 6 H 0.07 3.45 5.68 -2.91 -0.02 3.43 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 8 N -0.94 -55.36 13.29 21.45 0.28 -55.07 16 9 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.14 4.30 4.56 86.38 0.39 4.69 16 14 N -0.68 -17.24 4.95 -464.52 -2.30 -19.54 16 15 C 0.51 12.50 7.89 87.24 0.69 13.19 16 16 O -0.54 -15.49 16.48 -3.25 -0.05 -15.54 16 17 C 0.52 10.80 7.73 87.24 0.67 11.47 16 18 O -0.51 -12.13 13.91 -3.34 -0.05 -12.17 16 19 N -0.63 -9.70 5.32 -304.88 -1.62 -11.33 16 20 C 0.19 2.91 6.29 38.20 0.24 3.15 16 21 C -0.17 -1.97 9.94 22.45 0.22 -1.74 16 22 C 0.15 1.84 7.29 22.35 0.16 2.00 16 23 F -0.13 -1.67 17.27 44.97 0.78 -0.89 16 24 C -0.20 -2.46 10.00 22.39 0.22 -2.23 16 25 C 0.14 2.28 7.29 22.35 0.16 2.44 16 26 F -0.13 -2.42 17.27 44.97 0.78 -1.64 16 27 C -0.18 -3.10 8.67 22.45 0.19 -2.91 16 28 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16 29 H 0.06 1.98 6.62 -2.39 -0.02 1.96 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 33 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16 34 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 35 H -0.01 -0.43 8.14 -2.38 -0.02 -0.44 16 36 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.42 9.61 5.63 -92.71 -0.52 9.08 16 40 H 0.44 5.06 8.30 -92.70 -0.77 4.29 16 41 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.15 2.98 6.22 -2.91 -0.02 2.97 16 Total: -1.00 -63.88 368.87 4.51 -59.37 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -0.20 Total: 15.25 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 4.87 Total: -3.41 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -3.64 Total: -85.94 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.10 Total: -27.71 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 1.55 Total: -2.53 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.88 4.51 -59.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357999901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.257 kcal (2) G-P(sol) polarization free energy of solvation -63.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds