Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38223 * 119.84341 * 2 1 4 4 C 1.38272 * 120.14825 * 179.97438 * 3 2 1 5 5 F 1.35093 * 120.08657 * 180.02562 * 4 3 2 6 6 C 1.39850 * 119.82981 * 0.02562 * 4 3 2 7 7 C 1.47697 * 120.15574 * 179.97438 * 6 4 3 8 8 O 1.21574 * 119.99261 * 315.40687 * 7 6 4 9 9 N 1.34770 * 120.00202 * 135.41152 * 7 6 4 10 10 C 1.47155 * 120.98054 * 354.32384 * 9 7 6 11 11 C 1.53291 * 108.38377 * 230.26017 * 10 9 7 12 12 O 1.42958 * 109.22825 * 307.70227 * 11 10 9 13 13 C 1.42967 * 114.16772 * 62.57715 * 12 11 10 14 14 H 1.09007 * 109.50824 * 57.39757 * 13 12 11 15 15 C 1.52996 * 109.51462 * 177.49740 * 13 12 11 16 16 N 1.46498 * 109.47331 * 300.00589 * 15 13 12 17 17 C 1.36940 * 120.00132 * 180.02562 * 16 15 13 18 18 H 1.07991 * 119.99812 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99656 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00308 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99874 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46925 * 59.99746 * 21 19 17 23 23 H 1.48497 * 109.47457 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47293 * 300.00089 * 21 19 17 25 25 C 1.47148 * 120.98021 * 174.04688 * 9 7 6 26 26 C 1.39613 * 119.68852 * 0.24963 * 6 4 3 27 27 C 1.38116 * 119.85297 * 359.51531 * 26 6 4 28 28 F 1.35101 * 119.91622 * 180.20928 * 27 26 6 29 29 H 1.08996 * 109.47753 * 90.00233 * 1 2 3 30 30 H 1.09002 * 109.47006 * 210.00333 * 1 2 3 31 31 H 1.09000 * 109.46976 * 329.99721 * 1 2 3 32 32 H 1.08003 * 119.92982 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.68101 * 349.98632 * 10 9 7 34 34 H 1.08998 * 109.67913 * 110.50761 * 10 9 7 35 35 H 1.09004 * 109.51132 * 67.62643 * 11 10 9 36 36 H 1.09005 * 109.51530 * 187.77209 * 11 10 9 37 37 H 1.09005 * 109.47039 * 60.00090 * 15 13 12 38 38 H 1.08996 * 109.47384 * 179.97438 * 15 13 12 39 39 H 0.97001 * 119.99957 * 359.97438 * 16 15 13 40 40 H 0.97005 * 119.99706 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.68014 * 249.45787 * 25 9 7 42 42 H 1.08997 * 109.68428 * 10.00921 * 25 9 7 43 43 H 1.08002 * 120.07282 * 179.72978 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1989 0.0000 4 6 3.5775 1.2063 0.0005 5 9 4.2485 2.3788 0.0011 6 6 4.2796 -0.0032 0.0005 7 6 5.7566 -0.0037 0.0005 8 8 6.3646 0.7458 -0.7387 9 7 6.4302 -0.8352 0.8199 10 6 5.7214 -1.6616 1.8099 11 6 6.3958 -1.4679 3.1729 12 8 7.8001 -1.7003 3.0406 13 6 8.4639 -0.7890 2.1615 14 1 8.3030 0.2323 2.5068 15 6 9.9633 -1.0933 2.1471 16 7 10.5043 -0.9472 3.5006 17 6 11.8351 -1.1704 3.7338 18 1 12.4857 -1.4545 2.9201 19 6 12.3478 -1.0314 5.0163 20 7 11.5550 -0.6846 6.0080 21 14 14.1630 -1.3365 5.3347 22 1 14.9733 -0.3956 4.5203 23 1 14.4558 -1.1229 6.7747 24 1 14.5030 -2.7332 4.9618 25 6 7.8955 -0.9479 0.7467 26 6 3.5778 -1.2101 -0.0053 27 6 2.1967 -1.2023 -0.0009 28 9 1.5163 -2.3695 -0.0022 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6511 2.1321 0.0004 33 1 4.6785 -1.3503 1.8688 34 1 5.7756 -2.7105 1.5187 35 1 6.2266 -0.4490 3.5213 36 1 5.9760 -2.1731 3.8903 37 1 10.1235 -2.1142 1.8000 38 1 10.4686 -0.3985 1.4763 39 1 9.9200 -0.6916 4.2315 40 1 11.9134 -0.5871 6.9041 41 1 8.1691 -1.9251 0.3488 42 1 8.2923 -0.1641 0.1015 43 1 4.1138 -2.1478 -0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755003907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = -141.612098 kcal Electronic energy + Delta-G solvation = -29521.314556 eV Core-core repulsion = 25009.457831 eV Total energy + Delta-G solvation = -4511.856725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.15690 -50.04267 -41.82381 -40.11084 -39.25712 -36.73104 -35.92505 -34.35369 -33.77325 -31.90875 -31.39394 -29.72179 -28.73099 -27.06668 -25.07106 -24.61955 -24.04398 -23.26038 -22.29007 -20.97420 -19.30498 -19.02822 -18.57203 -18.33407 -17.92145 -17.55656 -17.14614 -17.04403 -16.57434 -16.52539 -16.41749 -16.05180 -15.75744 -15.54862 -15.42229 -15.09251 -15.03382 -14.47774 -14.37757 -14.24649 -14.17649 -14.04233 -13.80554 -13.51797 -13.12314 -12.93134 -12.78469 -12.68493 -12.57409 -12.54889 -12.29796 -12.10074 -11.90274 -11.72238 -11.31660 -11.12420 -10.95227 -10.24510 -9.81804 -9.68438 -9.01496 -7.94046 -5.23857 -0.59188 -0.23180 1.27891 1.47441 1.51639 1.55122 1.57803 2.13711 2.56408 2.69484 2.85337 2.89249 3.14044 3.39376 3.41498 3.48663 3.57986 3.80510 3.85872 3.87550 3.99156 4.08380 4.25574 4.33882 4.38292 4.42774 4.44368 4.53464 4.58681 4.66027 4.71606 4.76212 4.77995 4.82219 4.91911 5.06123 5.07271 5.11364 5.15778 5.47975 5.55163 6.02302 6.17689 6.27185 6.74854 7.33251 8.07037 8.31879 9.29546 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.002311 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.288877 B =12111.303962 C =12508.664082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.125 3.875 5 F -0.137 7.137 6 C -0.159 4.159 7 C 0.560 3.440 8 O -0.564 6.564 9 N -0.604 5.604 10 C 0.070 3.930 11 C 0.038 3.962 12 O -0.383 6.383 13 C 0.087 3.913 14 H 0.045 0.955 15 C 0.161 3.839 16 N -0.740 5.740 17 C -0.248 4.248 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.979 3.021 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.276 1.276 25 C 0.095 3.905 26 C -0.084 4.084 27 C 0.083 3.917 28 F -0.127 7.127 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.180 0.820 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.132 0.868 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.041 -1.385 -13.777 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.141 4.141 4 C 0.104 3.896 5 F -0.116 7.116 6 C -0.163 4.163 7 C 0.350 3.650 8 O -0.444 6.444 9 N -0.336 5.336 10 C -0.052 4.052 11 C -0.039 4.039 12 O -0.302 6.302 13 C 0.028 3.972 14 H 0.063 0.937 15 C 0.034 3.966 16 N -0.383 5.383 17 C -0.380 4.380 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.807 3.193 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.202 1.202 25 C -0.028 4.028 26 C -0.103 4.103 27 C 0.063 3.937 28 F -0.105 7.105 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.197 0.803 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.064 0.936 36 H 0.150 0.850 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -28.447 -1.195 -14.122 31.782 hybrid contribution 1.127 0.361 0.585 1.320 sum -27.320 -0.835 -13.537 30.501 Atomic orbital electron populations 1.20980 0.86641 1.05357 1.04733 1.20277 0.99194 0.90052 0.96113 1.21130 0.90052 1.00757 1.02132 1.17977 0.90962 0.79914 1.00710 1.91551 1.81046 1.45632 1.93328 1.19554 0.92410 0.93806 1.10529 1.18391 0.87397 0.79314 0.79942 1.90815 1.70250 1.40752 1.42545 1.48111 1.07414 1.41887 1.36179 1.22940 0.97772 0.96813 0.87672 1.23219 0.81087 1.02495 0.97069 1.88115 1.21191 1.54882 1.65966 1.22470 0.92863 0.92537 0.89348 0.93709 1.20769 0.89265 0.98935 0.87669 1.42396 1.06955 1.83542 1.05424 1.19637 0.86441 1.37985 0.93920 0.90330 1.25640 1.02522 1.03140 0.95678 1.69840 1.36117 1.55951 1.00166 0.85142 0.79631 0.78243 0.76302 1.20307 1.22104 1.20195 1.22195 0.79095 1.04566 0.96936 1.21242 0.92811 0.97983 0.98263 1.17312 0.89094 0.81922 1.05341 1.91546 1.79524 1.45565 1.93896 0.88592 0.90011 0.88348 0.80256 0.86465 0.87597 0.93559 0.85016 0.94761 0.93952 0.79312 0.93991 0.88336 0.88763 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.82 71.24 0.70 0.22 16 2 C -0.06 -0.53 5.89 -19.78 -0.12 -0.65 16 3 C -0.12 -1.44 9.66 22.27 0.22 -1.22 16 4 C 0.12 2.48 7.25 22.67 0.16 2.65 16 5 F -0.14 -3.58 16.38 44.97 0.74 -2.84 16 6 C -0.16 -3.27 4.95 -20.06 -0.10 -3.37 16 7 C 0.56 15.50 7.09 86.74 0.62 16.11 16 8 O -0.56 -20.32 15.93 -3.95 -0.06 -20.38 16 9 N -0.60 -15.10 3.02 -820.95 -2.48 -17.58 16 10 C 0.07 1.27 5.20 86.35 0.45 1.72 16 11 C 0.04 0.92 6.98 72.08 0.50 1.42 16 12 O -0.38 -13.28 10.13 -148.98 -1.51 -14.79 16 13 C 0.09 3.04 2.87 30.69 0.09 3.13 16 14 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 15 C 0.16 6.71 5.96 86.38 0.51 7.22 16 16 N -0.74 -39.72 5.49 -343.47 -1.89 -41.61 16 17 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 18 H 0.08 4.30 7.83 -2.92 -0.02 4.28 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 21 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 C 0.10 2.72 5.94 86.36 0.51 3.23 16 26 C -0.08 -1.19 7.50 22.57 0.17 -1.02 16 27 C 0.08 1.00 7.23 22.33 0.16 1.17 16 28 F -0.13 -1.57 16.45 44.97 0.74 -0.83 16 29 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.08 0.33 7.63 -2.39 -0.02 0.31 16 31 H 0.10 0.08 8.08 -2.39 -0.02 0.06 16 32 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 33 H 0.12 1.59 5.24 -2.39 -0.01 1.57 16 34 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16 35 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.13 2.45 8.14 -2.38 -0.02 2.43 16 37 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.38 21.68 7.54 -92.71 -0.70 20.98 16 40 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 41 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.09 2.90 7.06 -2.39 -0.02 2.88 16 43 H 0.17 1.84 7.03 -2.91 -0.02 1.82 16 Total: -1.00 -77.85 365.07 3.39 -74.46 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.36 Total: 22.40 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.18 Total: 12.96 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -4.08 Total: -120.14 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.57 Total: -35.17 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 1.48 Total: -3.68 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -77.85 3.39 -74.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755003907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.154 kcal (2) G-P(sol) polarization free energy of solvation -77.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds