Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30450 * 125.98867 * 2 1 4 4 N 1.39934 * 108.89533 * 179.97438 * 3 2 1 5 5 H 0.97007 * 125.75373 * 179.97438 * 4 3 2 6 6 C 1.34259 * 108.49352 * 359.75013 * 4 3 2 7 7 C 1.38043 * 107.41506 * 0.39685 * 6 4 3 8 8 C 1.47430 * 126.40995 * 179.87270 * 7 6 4 9 9 O 1.21605 * 119.99470 * 188.13902 * 8 7 6 10 10 N 1.34772 * 120.00275 * 8.14158 * 8 7 6 11 11 C 1.46500 * 120.00048 * 6.24989 * 10 8 7 12 12 C 1.46504 * 119.99810 * 186.25624 * 10 8 7 13 13 C 1.53003 * 109.47129 * 269.99662 * 12 10 8 14 14 H 1.08997 * 109.46981 * 295.00498 * 13 12 10 15 15 C 1.52996 * 109.47212 * 175.00208 * 13 12 10 16 16 N 1.46503 * 109.47010 * 55.00130 * 13 12 10 17 17 C 1.34772 * 119.99720 * 205.00196 * 16 13 12 18 18 O 1.21284 * 120.00298 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99670 * 180.27518 * 17 16 13 20 20 S 1.81002 * 109.46988 * 179.72360 * 19 17 16 21 21 C 1.76200 * 99.99978 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99862 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00197 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00380 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99849 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47414 * 89.99500 * 25 23 21 27 27 H 1.48499 * 109.47144 * 209.99841 * 25 23 21 28 28 H 1.48501 * 109.47113 * 329.99424 * 25 23 21 29 29 H 1.09002 * 109.47411 * 270.04483 * 1 2 3 30 30 H 1.09002 * 109.47682 * 30.03934 * 1 2 3 31 31 H 1.09001 * 109.47584 * 150.04218 * 1 2 3 32 32 H 1.07997 * 126.29194 * 180.24172 * 6 4 3 33 33 H 1.08994 * 109.47247 * 275.91591 * 11 10 8 34 34 H 1.09000 * 109.47197 * 35.91822 * 11 10 8 35 35 H 1.09003 * 109.46886 * 155.91214 * 11 10 8 36 36 H 1.09000 * 109.47121 * 149.99947 * 12 10 8 37 37 H 1.09000 * 109.47225 * 29.99961 * 12 10 8 38 38 H 1.09001 * 109.47316 * 59.99565 * 15 13 12 39 39 H 1.08999 * 109.47065 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.47076 * 299.99962 * 15 13 12 41 41 H 0.96999 * 119.99771 * 24.99911 * 16 13 12 42 42 H 1.09003 * 109.47137 * 299.72255 * 19 17 16 43 43 H 1.08996 * 109.47313 * 59.72425 * 19 17 16 44 44 H 0.96995 * 120.00298 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 0.0006 5 1 4.3842 1.2301 0.0004 6 6 3.6438 -0.6980 0.0065 7 6 2.3372 -1.1432 0.0006 8 6 1.8915 -2.5485 0.0012 9 8 0.7148 -2.8132 -0.1535 10 7 2.7883 -3.5398 0.1734 11 6 4.1810 -3.2198 0.4960 12 6 2.3702 -4.9374 0.0379 13 6 1.9085 -5.4658 1.3975 14 1 2.7529 -5.4828 2.0865 15 6 1.3558 -6.8829 1.2330 16 7 0.8606 -4.5917 1.9308 17 6 0.6507 -4.5253 3.2604 18 8 1.3289 -5.1893 4.0154 19 6 -0.4313 -3.6309 3.8085 20 16 -0.4695 -3.7665 5.6131 21 6 -1.7839 -2.6506 5.9760 22 1 -2.2894 -2.1327 5.1744 23 6 -2.1696 -2.4371 7.2922 24 7 -3.1512 -1.6031 7.5634 25 14 -1.2947 -3.3323 8.6787 26 1 -0.1436 -2.5182 9.1449 27 1 -2.2394 -3.5444 9.8047 28 1 -0.8057 -4.6461 8.1888 29 1 -0.3634 0.0008 1.0277 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3634 -0.8903 -0.5132 32 1 4.5296 -1.3157 0.0121 33 1 4.7273 -3.0075 -0.4230 34 1 4.2117 -2.3460 1.1469 35 1 4.6403 -4.0677 1.0042 36 1 3.2096 -5.5348 -0.3180 37 1 1.5489 -5.0034 -0.6757 38 1 2.1353 -7.5332 0.8361 39 1 1.0264 -7.2591 2.2015 40 1 0.5113 -6.8658 0.5439 41 1 0.3180 -4.0609 1.3269 42 1 -0.2268 -2.5981 3.5260 43 1 -1.3953 -3.9350 3.4009 44 1 -3.4205 -1.4537 8.4831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756479881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = 14.732451 kcal Electronic energy + Delta-G solvation = -27814.833413 eV Core-core repulsion = 23895.889435 eV Total energy + Delta-G solvation = -3918.943979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81786 -40.05927 -38.82125 -36.40334 -34.87203 -33.16184 -32.37144 -31.69615 -30.61883 -28.55821 -28.17745 -27.80974 -26.35038 -25.53866 -22.92004 -21.87030 -20.72313 -20.12815 -19.76702 -17.95483 -17.81432 -16.89260 -16.59663 -16.22607 -16.15000 -15.44662 -14.94272 -14.83609 -14.78714 -14.69473 -14.00696 -13.89556 -13.44802 -13.26155 -13.22919 -13.12488 -12.87249 -12.83406 -12.72338 -12.47805 -12.25923 -12.02742 -11.94127 -11.77871 -11.21997 -11.19900 -11.08457 -10.95801 -10.50949 -10.03149 -9.79577 -9.74809 -9.36877 -9.13936 -9.00421 -8.93778 -8.70397 -8.41327 -6.83213 -6.22120 -3.92686 1.16788 1.92327 2.34778 2.71723 2.89796 3.12914 3.19676 3.36586 3.44473 3.55121 3.81484 4.16940 4.23172 4.39002 4.57255 4.60165 4.66442 4.86096 4.90409 4.93702 5.03658 5.12385 5.15771 5.16961 5.19849 5.26577 5.45458 5.50150 5.67185 5.68327 5.77748 5.85582 5.91516 5.97878 6.07480 6.18241 6.26481 6.32926 6.76687 6.81078 7.04393 7.30355 7.85188 8.01218 8.06072 8.50059 8.70461 9.24255 10.87311 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003608 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.339116 B = 7758.005124 C = 9417.941551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.142 3.858 3 N -0.300 5.300 4 N -0.462 5.462 5 H 0.443 0.557 6 C 0.087 3.913 7 C -0.288 4.288 8 C 0.601 3.399 9 O -0.538 6.538 10 N -0.612 5.612 11 C 0.064 3.936 12 C 0.110 3.890 13 C 0.127 3.873 14 H 0.085 0.915 15 C -0.162 4.162 16 N -0.727 5.727 17 C 0.531 3.469 18 O -0.529 6.529 19 C -0.121 4.121 20 S -0.144 6.144 21 C -0.519 4.519 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.882 5.882 25 Si 0.856 3.144 26 H -0.268 1.268 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.200 0.800 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.410 0.590 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.212 -1.929 -21.928 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.026 4.026 3 N -0.122 5.122 4 N -0.166 5.166 5 H 0.288 0.712 6 C -0.065 4.065 7 C -0.303 4.303 8 C 0.392 3.608 9 O -0.416 6.416 10 N -0.345 5.345 11 C -0.079 4.079 12 C -0.013 4.013 13 C 0.020 3.980 14 H 0.103 0.897 15 C -0.221 4.221 16 N -0.387 5.387 17 C 0.317 3.683 18 O -0.405 6.405 19 C -0.271 4.271 20 S 0.082 5.918 21 C -0.666 4.666 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.519 5.519 25 Si 0.681 3.319 26 H -0.193 1.193 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.217 0.783 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.251 0.749 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.617 -1.792 -20.659 27.867 hybrid contribution -0.126 0.286 -0.297 0.432 sum 18.490 -1.505 -20.956 27.988 Atomic orbital electron populations 1.20450 0.85346 1.04317 1.04299 1.22548 0.97553 0.88466 0.94072 1.77227 0.86194 1.22471 1.26350 1.46204 1.07980 1.05583 1.56863 0.71205 1.24181 0.99757 0.85713 0.96872 1.20178 0.92236 0.94356 1.23529 1.17257 0.84994 0.83536 0.74997 1.90617 1.16522 1.83545 1.50891 1.47552 1.09769 1.06103 1.71039 1.22316 0.82115 1.03202 1.00286 1.21896 1.01471 0.80707 0.97236 1.21284 0.91779 0.90137 0.94765 0.89653 1.22134 1.01290 0.95564 1.03126 1.46369 1.37871 1.46904 1.07527 1.20249 0.84139 0.82002 0.81927 1.90660 1.48125 1.44010 1.57694 1.23248 0.99935 1.01774 1.02166 1.84680 1.48504 1.60519 0.98113 1.22344 1.19026 1.28280 0.96969 0.89386 1.24702 0.94212 0.94268 0.98100 1.69941 1.27214 1.34386 1.20312 0.86741 0.80134 0.82720 0.82285 1.19331 1.20006 1.15923 0.89565 0.90879 0.88256 0.78336 0.92127 0.90269 0.90202 0.88975 0.89048 0.91884 0.91377 0.92236 0.74917 0.88855 0.88614 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.01 36.00 0.36 -0.64 16 2 C 0.14 1.76 7.26 -82.02 -0.60 1.16 16 3 N -0.30 -3.56 12.63 33.89 0.43 -3.14 16 4 N -0.46 -3.56 7.29 30.85 0.22 -3.34 16 5 H 0.44 1.74 8.96 -182.72 -1.64 0.10 16 6 C 0.09 0.62 9.91 -16.56 -0.16 0.46 16 7 C -0.29 -3.13 5.94 -105.07 -0.62 -3.75 16 8 C 0.60 6.90 7.09 -12.52 -0.09 6.81 16 9 O -0.54 -7.39 11.90 5.27 0.06 -7.33 16 10 N -0.61 -5.29 2.77 -182.85 -0.51 -5.80 16 11 C 0.06 0.32 8.65 59.85 0.52 0.84 16 12 C 0.11 0.89 5.11 -4.04 -0.02 0.87 16 13 C 0.13 1.44 2.88 -67.93 -0.20 1.24 16 14 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 15 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 16 N -0.73 -10.77 4.48 -53.81 -0.24 -11.01 16 17 C 0.53 10.23 7.81 -10.99 -0.09 10.14 16 18 O -0.53 -11.74 15.53 5.55 0.09 -11.65 16 19 C -0.12 -2.57 6.16 36.01 0.22 -2.35 16 20 S -0.14 -3.82 18.55 -107.50 -1.99 -5.81 16 21 C -0.52 -15.46 10.04 30.94 0.31 -15.15 16 22 H 0.09 2.75 8.03 -52.48 -0.42 2.33 16 23 C 0.10 2.87 5.50 -17.43 -0.10 2.77 16 24 N -0.88 -27.23 13.97 55.49 0.78 -26.46 16 25 Si 0.86 22.31 27.74 -169.99 -4.72 17.59 16 26 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.19 6.42 -51.93 -0.33 0.86 16 32 H 0.20 0.57 4.47 -52.49 -0.23 0.34 16 33 H 0.06 0.14 7.29 -51.93 -0.38 -0.24 16 34 H 0.08 0.42 5.44 -51.93 -0.28 0.14 16 35 H 0.08 0.34 8.03 -51.93 -0.42 -0.08 16 36 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16 37 H 0.09 0.80 7.52 -51.93 -0.39 0.41 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.41 6.03 5.55 -40.82 -0.23 5.80 16 42 H 0.09 1.93 8.14 -51.91 -0.42 1.51 16 43 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 44 H 0.27 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -38.83 374.30 -7.60 -46.43 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.25 Total: 3.78 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.11 Total: 1.08 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.68 Total: -49.74 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.15 Total: -18.97 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.72 Total: 17.59 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -1.99 Total: -5.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.83 -7.60 -46.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756479881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.163 kcal (2) G-P(sol) polarization free energy of solvation -38.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds