Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30450 * 125.98867 * 2 1 4 4 N 1.39934 * 108.89533 * 179.97438 * 3 2 1 5 5 H 0.97007 * 125.75373 * 179.97438 * 4 3 2 6 6 C 1.34259 * 108.49352 * 359.75013 * 4 3 2 7 7 C 1.38043 * 107.41506 * 0.39685 * 6 4 3 8 8 C 1.47430 * 126.40995 * 179.87270 * 7 6 4 9 9 O 1.21605 * 119.99470 * 188.13902 * 8 7 6 10 10 N 1.34772 * 120.00275 * 8.14158 * 8 7 6 11 11 C 1.46500 * 120.00048 * 6.24989 * 10 8 7 12 12 C 1.46504 * 119.99810 * 186.25624 * 10 8 7 13 13 C 1.53003 * 109.47129 * 269.99662 * 12 10 8 14 14 H 1.08997 * 109.46981 * 295.00498 * 13 12 10 15 15 C 1.52996 * 109.47212 * 175.00208 * 13 12 10 16 16 N 1.46503 * 109.47010 * 55.00130 * 13 12 10 17 17 C 1.34772 * 119.99720 * 205.00196 * 16 13 12 18 18 O 1.21284 * 120.00298 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99670 * 180.27518 * 17 16 13 20 20 S 1.81002 * 109.46988 * 179.72360 * 19 17 16 21 21 C 1.76200 * 99.99978 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99862 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00197 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00380 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99849 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47414 * 89.99500 * 25 23 21 27 27 H 1.48499 * 109.47144 * 209.99841 * 25 23 21 28 28 H 1.48501 * 109.47113 * 329.99424 * 25 23 21 29 29 H 1.09002 * 109.47411 * 270.04483 * 1 2 3 30 30 H 1.09002 * 109.47682 * 30.03934 * 1 2 3 31 31 H 1.09001 * 109.47584 * 150.04218 * 1 2 3 32 32 H 1.07997 * 126.29194 * 180.24172 * 6 4 3 33 33 H 1.08994 * 109.47247 * 275.91591 * 11 10 8 34 34 H 1.09000 * 109.47197 * 35.91822 * 11 10 8 35 35 H 1.09003 * 109.46886 * 155.91214 * 11 10 8 36 36 H 1.09000 * 109.47121 * 149.99947 * 12 10 8 37 37 H 1.09000 * 109.47225 * 29.99961 * 12 10 8 38 38 H 1.09001 * 109.47316 * 59.99565 * 15 13 12 39 39 H 1.08999 * 109.47065 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.47076 * 299.99962 * 15 13 12 41 41 H 0.96999 * 119.99771 * 24.99911 * 16 13 12 42 42 H 1.09003 * 109.47137 * 299.72255 * 19 17 16 43 43 H 1.08996 * 109.47313 * 59.72425 * 19 17 16 44 44 H 0.96995 * 120.00298 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 0.0006 5 1 4.3842 1.2301 0.0004 6 6 3.6438 -0.6980 0.0065 7 6 2.3372 -1.1432 0.0006 8 6 1.8915 -2.5485 0.0012 9 8 0.7148 -2.8132 -0.1535 10 7 2.7883 -3.5398 0.1734 11 6 4.1810 -3.2198 0.4960 12 6 2.3702 -4.9374 0.0379 13 6 1.9085 -5.4658 1.3975 14 1 2.7529 -5.4828 2.0865 15 6 1.3558 -6.8829 1.2330 16 7 0.8606 -4.5917 1.9308 17 6 0.6507 -4.5253 3.2604 18 8 1.3289 -5.1893 4.0154 19 6 -0.4313 -3.6309 3.8085 20 16 -0.4695 -3.7665 5.6131 21 6 -1.7839 -2.6506 5.9760 22 1 -2.2894 -2.1327 5.1744 23 6 -2.1696 -2.4371 7.2922 24 7 -3.1512 -1.6031 7.5634 25 14 -1.2947 -3.3323 8.6787 26 1 -0.1436 -2.5182 9.1449 27 1 -2.2394 -3.5444 9.8047 28 1 -0.8057 -4.6461 8.1888 29 1 -0.3634 0.0008 1.0277 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3634 -0.8903 -0.5132 32 1 4.5296 -1.3157 0.0121 33 1 4.7273 -3.0075 -0.4230 34 1 4.2117 -2.3460 1.1469 35 1 4.6403 -4.0677 1.0042 36 1 3.2096 -5.5348 -0.3180 37 1 1.5489 -5.0034 -0.6757 38 1 2.1353 -7.5332 0.8361 39 1 1.0264 -7.2591 2.2015 40 1 0.5113 -6.8658 0.5439 41 1 0.3180 -4.0609 1.3269 42 1 -0.2268 -2.5981 3.5260 43 1 -1.3953 -3.9350 3.4009 44 1 -3.4205 -1.4537 8.4831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756479881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -14.986174 kcal Electronic energy + Delta-G solvation = -27816.122109 eV Core-core repulsion = 23895.889435 eV Total energy + Delta-G solvation = -3920.232675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54339 -41.07570 -40.03108 -37.30395 -35.85965 -34.69102 -33.94966 -32.90055 -31.46953 -30.05653 -29.03143 -28.35595 -27.86991 -27.05416 -23.68689 -22.84514 -21.60749 -21.32566 -20.52729 -19.90450 -18.60261 -18.10093 -17.64417 -17.32985 -17.11102 -16.91761 -16.38579 -16.33151 -15.80787 -15.55667 -15.47192 -14.97797 -14.70253 -14.67913 -14.23259 -14.05608 -14.00273 -13.84564 -13.71445 -13.38478 -13.35388 -13.23258 -13.01804 -12.96812 -12.87018 -12.58213 -12.47488 -12.07938 -11.87234 -11.84101 -11.18518 -10.98449 -10.83145 -10.58323 -10.53808 -10.11712 -9.88287 -9.54631 -9.01753 -8.52639 -6.24265 0.53454 0.96808 1.05945 1.29946 1.45390 1.55056 1.58194 1.75983 2.08604 2.23745 2.36058 2.40826 2.71538 2.85107 3.45310 3.69434 3.81612 3.91764 4.00246 4.12012 4.19309 4.22409 4.27130 4.38392 4.41101 4.43092 4.56856 4.64166 4.72414 4.78014 4.84199 4.87532 4.92178 4.98318 5.06668 5.29206 5.44445 5.50601 5.66797 5.69336 6.09675 6.26560 6.35217 6.53369 6.55958 6.91572 7.17840 7.30626 8.60358 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003608 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.339116 B = 7758.005124 C = 9417.941551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.117 3.883 3 N -0.333 5.333 4 N -0.449 5.449 5 H 0.460 0.540 6 C 0.120 3.880 7 C -0.321 4.321 8 C 0.592 3.408 9 O -0.574 6.574 10 N -0.610 5.610 11 C 0.050 3.950 12 C 0.116 3.884 13 C 0.121 3.879 14 H 0.078 0.922 15 C -0.157 4.157 16 N -0.708 5.708 17 C 0.535 3.465 18 O -0.560 6.560 19 C -0.111 4.111 20 S -0.162 6.162 21 C -0.534 4.534 22 H 0.056 0.944 23 C 0.046 3.954 24 N -0.918 5.918 25 Si 0.917 3.083 26 H -0.260 1.260 27 H -0.256 1.256 28 H -0.236 1.236 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.412 0.588 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.707 -3.281 -23.087 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 N -0.156 5.156 4 N -0.155 5.155 5 H 0.309 0.691 6 C -0.034 4.034 7 C -0.336 4.336 8 C 0.384 3.616 9 O -0.455 6.455 10 N -0.341 5.341 11 C -0.091 4.091 12 C -0.007 4.007 13 C 0.015 3.985 14 H 0.096 0.904 15 C -0.216 4.216 16 N -0.367 5.367 17 C 0.320 3.680 18 O -0.440 6.440 19 C -0.262 4.262 20 S 0.065 5.935 21 C -0.682 4.682 22 H 0.074 0.926 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.738 3.262 26 H -0.185 1.185 27 H -0.180 1.180 28 H -0.160 1.160 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.254 0.746 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.150 -3.124 -21.862 31.279 hybrid contribution -1.145 0.745 -0.099 1.370 sum 21.005 -2.379 -21.962 30.482 Atomic orbital electron populations 1.20340 0.86180 1.04347 1.03176 1.22647 0.97712 0.89628 0.95086 1.77125 0.88060 1.23025 1.27439 1.46248 1.07265 1.06401 1.55609 0.69136 1.24827 0.99836 0.85408 0.93306 1.20312 0.93595 0.93884 1.25829 1.17482 0.84974 0.84306 0.74875 1.90585 1.18093 1.84067 1.52765 1.47648 1.10864 1.05654 1.69904 1.22650 0.80302 1.03852 1.02328 1.21968 1.03079 0.80946 0.94709 1.21651 0.90261 0.90248 0.96308 0.90389 1.22087 1.02647 0.95262 1.01575 1.46360 1.38108 1.46484 1.05709 1.19808 0.83379 0.81475 0.83330 1.90643 1.49217 1.45366 1.58727 1.23241 1.01626 1.02885 0.98485 1.84467 1.46866 1.59412 1.02758 1.22478 1.20084 1.28979 0.96621 0.92589 1.25596 0.94857 0.94942 1.00495 1.70023 1.28461 1.35590 1.21467 0.85834 0.79463 0.81386 0.79468 1.18506 1.18020 1.15966 0.91244 0.90112 0.88940 0.73676 0.88305 0.90534 0.88798 0.84478 0.89566 0.88316 0.94662 0.91759 0.74639 0.88593 0.88018 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 10.01 71.23 0.71 -1.37 16 2 C 0.12 2.95 7.26 43.51 0.32 3.26 16 3 N -0.33 -7.82 12.63 -46.68 -0.59 -8.41 16 4 N -0.45 -5.95 7.29 -56.32 -0.41 -6.36 16 5 H 0.46 2.36 8.96 -213.42 -1.91 0.45 16 6 C 0.12 1.34 9.91 84.28 0.83 2.18 16 7 C -0.32 -6.61 5.94 -20.15 -0.12 -6.73 16 8 C 0.59 12.90 7.09 86.67 0.61 13.51 16 9 O -0.57 -15.90 11.90 -4.05 -0.05 -15.95 16 10 N -0.61 -8.69 2.77 -850.66 -2.36 -11.05 16 11 C 0.05 0.28 8.65 127.77 1.11 1.38 16 12 C 0.12 1.49 5.11 86.38 0.44 1.93 16 13 C 0.12 2.48 2.88 44.99 0.13 2.61 16 14 H 0.08 1.78 7.58 -2.39 -0.02 1.76 16 15 C -0.16 -2.92 9.48 71.98 0.68 -2.24 16 16 N -0.71 -20.54 4.48 -442.53 -1.98 -22.52 16 17 C 0.54 20.62 7.81 87.66 0.68 21.31 16 18 O -0.56 -24.79 15.53 -3.04 -0.05 -24.84 16 19 C -0.11 -4.85 6.16 71.24 0.44 -4.41 16 20 S -0.16 -8.65 18.55 -56.49 -1.05 -9.70 16 21 C -0.53 -32.81 10.04 67.95 0.68 -32.12 16 22 H 0.06 3.67 8.03 -2.91 -0.02 3.65 16 23 C 0.05 2.82 5.50 84.86 0.47 3.29 16 24 N -0.92 -57.67 13.97 21.65 0.30 -57.36 16 25 Si 0.92 46.17 27.74 68.60 1.90 48.07 16 26 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 2.42 6.42 -2.39 -0.02 2.41 16 32 H 0.25 0.12 4.47 -2.91 -0.01 0.11 16 33 H 0.10 -0.16 7.29 -2.39 -0.02 -0.17 16 34 H 0.08 0.49 5.44 -2.39 -0.01 0.47 16 35 H 0.09 0.33 8.03 -2.39 -0.02 0.31 16 36 H 0.14 0.61 8.07 -2.39 -0.02 0.59 16 37 H 0.09 1.27 7.52 -2.39 -0.02 1.26 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.41 12.07 5.55 -92.71 -0.51 11.56 16 42 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 43 H 0.10 4.27 8.14 -2.40 -0.02 4.25 16 44 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -88.47 374.30 1.30 -87.17 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -1.41 Total: 18.36 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.99 Total: 2.59 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.04 Total: -105.71 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.10 Total: -40.78 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.07 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.70 kcal Total: -88.47 1.30 -87.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756479881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.185 kcal (2) G-P(sol) polarization free energy of solvation -88.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds