Wall clock time and date at job start Sat Apr 11 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39668 * 127.31893 * 2 1 4 4 N 1.30864 * 107.86379 * 180.22821 * 3 2 1 5 5 N 1.28440 * 110.92341 * 359.77588 * 4 3 2 6 6 C 1.46499 * 125.19146 * 180.02562 * 5 4 3 7 7 C 1.36604 * 109.62285 * 359.97438 * 5 4 3 8 8 C 1.47159 * 126.88708 * 179.97438 * 7 5 4 9 9 O 1.21626 * 119.99997 * 99.95332 * 8 7 5 10 10 N 1.34778 * 120.00042 * 279.95572 * 8 7 5 11 11 C 1.46500 * 120.00084 * 174.80370 * 10 8 7 12 12 C 1.53000 * 109.46954 * 180.27840 * 11 10 8 13 13 C 1.53006 * 109.46884 * 180.02562 * 12 11 10 14 14 N 1.46503 * 109.47112 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00058 * 179.97438 * 14 13 12 16 16 O 1.21278 * 120.00069 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99988 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.46990 * 179.97438 * 17 15 14 19 19 C 1.76192 * 99.99906 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99991 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00456 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99221 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00392 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47200 * 60.00364 * 23 21 19 25 25 H 1.48501 * 109.47161 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47327 * 300.00039 * 23 21 19 27 27 H 1.08996 * 109.47281 * 270.14966 * 1 2 3 28 28 H 1.08997 * 109.46840 * 30.15010 * 1 2 3 29 29 H 1.08999 * 109.46731 * 150.14842 * 1 2 3 30 30 H 1.08003 * 126.06804 * 0.03676 * 3 2 1 31 31 H 1.09006 * 109.47183 * 274.96464 * 6 5 4 32 32 H 1.09006 * 109.47311 * 34.95917 * 6 5 4 33 33 H 1.09001 * 109.47405 * 154.96312 * 6 5 4 34 34 H 0.97000 * 119.99666 * 355.08551 * 10 8 7 35 35 H 1.09001 * 109.47024 * 300.27696 * 11 10 8 36 36 H 1.09000 * 109.46857 * 60.27755 * 11 10 8 37 37 H 1.09001 * 109.47138 * 299.99787 * 12 11 10 38 38 H 1.08992 * 109.47554 * 59.99973 * 12 11 10 39 39 H 1.09001 * 109.46816 * 299.99686 * 13 12 11 40 40 H 1.09000 * 109.47136 * 59.99788 * 13 12 11 41 41 H 0.97006 * 120.00060 * 359.97438 * 14 13 12 42 42 H 1.09001 * 109.46826 * 300.00060 * 17 15 14 43 43 H 1.09001 * 109.46687 * 59.99811 * 17 15 14 44 44 H 0.97000 * 119.99615 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6749 -0.0050 5 7 3.6206 -0.6091 -0.0035 6 6 4.8391 -1.4224 -0.0073 7 6 2.3461 -1.1007 0.0034 8 6 1.9455 -2.5167 0.0067 9 8 1.6101 -3.0514 1.0463 10 7 1.9504 -3.2211 -1.1424 11 6 1.6623 -4.6573 -1.1224 12 6 1.7387 -5.2126 -2.5460 13 6 1.4371 -6.7125 -2.5252 14 7 1.5097 -7.2442 -3.8884 15 6 1.2791 -8.5527 -4.1146 16 8 1.0121 -9.2901 -3.1895 17 6 1.3532 -9.0994 -5.5170 18 16 0.9981 -10.8741 -5.4921 19 6 1.1496 -11.2404 -7.2088 20 1 1.3961 -10.4558 -7.9088 21 6 0.9521 -12.5376 -7.6618 22 7 0.6521 -13.4940 -6.8086 23 14 1.1120 -12.9258 -9.4820 24 1 2.4840 -12.5906 -9.9409 25 1 0.8558 -14.3716 -9.7041 26 1 0.1241 -12.1241 -10.2478 27 1 -0.3633 0.0027 1.0276 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 2.0450 2.1457 0.0006 31 1 5.1866 -1.5515 -1.0325 32 1 5.6113 -0.9229 0.5778 33 1 4.6262 -2.3980 0.4296 34 1 2.1488 -2.7778 -1.9821 35 1 2.3937 -5.1659 -0.4943 36 1 0.6622 -4.8216 -0.7214 37 1 1.0073 -4.7040 -3.1741 38 1 2.7388 -5.0483 -2.9470 39 1 2.1683 -7.2214 -1.8970 40 1 0.4369 -6.8765 -2.1243 41 1 1.7236 -6.6544 -4.6283 42 1 0.6212 -8.5908 -6.1443 43 1 2.3530 -8.9348 -5.9187 44 1 0.5145 -14.4006 -7.1251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758126418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:34 Heat of formation + Delta-G solvation = -33.915154 kcal Electronic energy + Delta-G solvation = -25225.941734 eV Core-core repulsion = 21304.888237 eV Total energy + Delta-G solvation = -3921.053497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.55281 -40.74396 -40.48609 -37.29153 -35.61037 -34.97844 -34.57315 -33.27981 -32.41805 -30.59230 -29.35117 -27.69192 -27.14023 -26.46309 -23.74852 -22.84087 -21.95679 -21.73163 -20.91241 -19.81611 -18.95256 -17.83063 -17.72084 -17.25864 -17.12732 -16.86763 -16.78565 -16.60512 -16.33035 -15.79482 -15.52764 -15.26570 -14.69871 -14.52025 -14.37216 -14.32059 -14.26870 -14.01968 -13.53243 -13.37607 -13.36438 -13.25482 -13.15927 -13.09655 -12.85573 -12.64046 -12.60619 -12.11155 -11.74790 -11.70706 -11.42985 -11.11884 -10.96468 -10.33104 -10.26369 -10.22248 -10.11100 -9.70896 -8.65880 -8.33581 -6.11831 0.54259 0.99216 1.27759 1.44789 1.47613 1.56223 1.62710 1.63639 1.64925 2.02042 2.28251 2.37573 3.00609 3.33233 3.44689 3.53012 3.84792 3.94516 3.96171 4.08147 4.13413 4.18089 4.24092 4.32136 4.41830 4.50524 4.51798 4.53221 4.56955 4.63005 4.75704 4.81520 5.04019 5.07790 5.08444 5.12836 5.21346 5.42484 5.44126 5.57129 5.72493 6.20480 6.24694 6.52843 6.90119 7.00920 7.07664 7.26943 8.75318 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.001427 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.940810 B =19621.970146 C =19800.958867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.163 4.163 3 C 0.001 3.999 4 N -0.302 5.302 5 N -0.275 5.275 6 C 0.077 3.923 7 C -0.054 4.054 8 C 0.599 3.401 9 O -0.560 6.560 10 N -0.697 5.697 11 C 0.122 3.878 12 C -0.123 4.123 13 C 0.121 3.879 14 N -0.711 5.711 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.156 6.156 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.212 0.788 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.419 0.581 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.419 0.581 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 32.851 8.536 34.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.174 4.174 3 C -0.176 4.176 4 N -0.133 5.133 5 N -0.064 5.064 6 C -0.062 4.062 7 C -0.182 4.182 8 C 0.382 3.618 9 O -0.437 6.437 10 N -0.349 5.349 11 C -0.002 4.002 12 C -0.160 4.160 13 C -0.004 4.004 14 N -0.365 5.365 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.071 5.929 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.228 0.772 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.257 0.743 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.662 31.311 10.842 33.798 hybrid contribution -0.295 0.232 -2.261 2.292 sum 6.367 31.543 8.581 33.304 Atomic orbital electron populations 1.20189 0.87135 1.03587 1.02635 1.21067 0.97901 0.90672 1.07787 1.23956 0.87171 1.01166 1.05292 1.73146 1.25297 0.93707 1.21179 1.45837 1.05941 1.03684 1.50889 1.22480 0.83087 0.94288 1.06366 1.21361 0.86953 0.94427 1.15496 1.17048 0.77336 0.83550 0.83865 1.90869 1.48612 1.70747 1.33477 1.45806 1.70015 1.09753 1.09355 1.21290 1.02156 0.78979 0.97777 1.21803 1.05364 0.92776 0.96102 1.21227 1.01913 0.94177 0.83050 1.45652 1.72018 1.07927 1.10913 1.20081 0.75668 0.82720 0.89775 1.90705 1.48660 1.59109 1.46168 1.23376 1.06775 1.00710 0.97197 1.85617 1.92363 1.02424 1.12453 1.23186 1.55587 0.98028 0.92708 0.89761 1.26133 0.93797 0.94896 1.04329 1.70185 1.45610 1.01961 1.37038 0.85004 0.79423 0.77324 0.76250 1.18621 1.20537 1.18626 0.91368 0.88678 0.92214 0.77156 0.87176 0.87346 0.88842 0.74401 0.91017 0.91439 0.88363 0.88070 0.92119 0.92315 0.74344 0.87050 0.87014 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.28 71.24 0.73 -0.12 16 2 C -0.16 -2.44 6.30 -19.48 -0.12 -2.56 16 3 C 0.00 0.01 12.00 85.18 1.02 1.03 16 4 N -0.30 -5.06 11.90 -57.14 -0.68 -5.74 16 5 N -0.27 -4.05 3.75 -356.01 -1.33 -5.39 16 6 C 0.08 0.57 11.22 127.77 1.43 2.00 16 7 C -0.05 -0.88 6.71 40.78 0.27 -0.61 16 8 C 0.60 10.36 6.77 86.59 0.59 10.95 16 9 O -0.56 -14.67 17.12 -4.11 -0.07 -14.74 16 10 N -0.70 -7.02 5.55 -466.63 -2.59 -9.61 16 11 C 0.12 1.33 5.68 86.38 0.49 1.83 16 12 C -0.12 -0.92 5.44 30.60 0.17 -0.75 16 13 C 0.12 2.09 5.67 86.38 0.49 2.58 16 14 N -0.71 -14.84 5.56 -463.04 -2.57 -17.42 16 15 C 0.53 18.32 7.85 87.66 0.69 19.01 16 16 O -0.57 -25.55 15.86 -3.02 -0.05 -25.60 16 17 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 18 S -0.16 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -30.70 9.50 67.96 0.65 -30.05 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -55.58 13.22 21.65 0.29 -55.30 16 23 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.68 8.07 -2.39 -0.02 0.66 16 30 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 0.67 7.65 -2.39 -0.02 0.65 16 34 H 0.42 1.96 8.46 -92.71 -0.78 1.17 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.42 5.39 8.47 -92.70 -0.79 4.61 16 42 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 43 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -87.89 397.99 0.63 -87.26 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.54 Total: 11.21 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 7.31 Total: 0.12 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -6.89 Total: -93.44 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.12 Total: -40.34 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -87.89 0.63 -87.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758126418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.342 kcal (2) G-P(sol) polarization free energy of solvation -87.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds