Wall clock time and date at job start Sat Apr 11 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35565 * 125.82619 * 2 1 4 4 N 1.35397 * 107.16073 * 180.02562 * 3 2 1 5 5 H 0.97004 * 126.43754 * 179.97438 * 4 3 2 6 6 C 1.36667 * 107.12284 * 0.02562 * 4 3 2 7 7 C 1.47403 * 125.86331 * 180.02562 * 6 4 3 8 8 O 1.21603 * 120.00247 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99870 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99732 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47381 * 35.00069 * 10 9 7 12 12 C 1.53006 * 109.47249 * 274.99921 * 10 9 7 13 13 C 1.52999 * 109.46944 * 155.00564 * 10 9 7 14 14 C 1.53009 * 109.46984 * 294.99645 * 13 10 9 15 15 N 1.46497 * 109.47006 * 180.02562 * 14 13 10 16 16 C 1.34778 * 119.99347 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00663 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99450 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.46845 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00138 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99962 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00284 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99845 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47010 * 60.00601 * 24 22 20 26 26 H 1.48502 * 109.46801 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47104 * 300.00796 * 24 22 20 28 28 N 1.31614 * 108.26855 * 0.26083 * 6 4 3 29 29 H 1.09002 * 109.47146 * 89.99617 * 1 2 3 30 30 H 1.08999 * 109.47326 * 210.00004 * 1 2 3 31 31 H 1.09005 * 109.46789 * 330.00097 * 1 2 3 32 32 H 1.08007 * 126.41611 * 0.07660 * 3 2 1 33 33 H 0.96998 * 119.99903 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 37 37 H 1.08997 * 109.47756 * 54.99315 * 13 10 9 38 38 H 1.09001 * 109.47317 * 175.00198 * 13 10 9 39 39 H 1.08999 * 109.47112 * 300.00392 * 14 13 10 40 40 H 1.09001 * 109.46642 * 60.00139 * 14 13 10 41 41 H 0.96996 * 120.00415 * 0.02562 * 15 14 13 42 42 H 1.08995 * 109.46902 * 299.99671 * 18 16 15 43 43 H 1.08996 * 109.46938 * 60.00335 * 18 16 15 44 44 H 0.96998 * 120.00262 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6658 -0.0006 5 1 4.3789 1.2208 -0.0011 6 6 3.5465 -0.7003 -0.0015 7 6 4.7174 -1.5958 -0.0018 8 8 5.8401 -1.1286 -0.0008 9 7 4.5436 -2.9323 -0.0023 10 6 5.7074 -3.8222 -0.0020 11 1 6.5071 -3.3744 0.5879 12 6 6.1895 -4.0318 -1.4389 13 6 5.3180 -5.1707 0.6070 14 6 4.9549 -4.9789 2.0809 15 7 4.5827 -6.2701 2.6642 16 6 4.2221 -6.3449 3.9607 17 8 4.2061 -5.3435 4.6445 18 6 3.8386 -7.6732 4.5606 19 16 3.4092 -7.4462 6.3042 20 6 3.0132 -9.1068 6.7405 21 1 3.0804 -9.8903 6.0002 22 6 2.6157 -9.4081 8.0358 23 7 2.5343 -8.4533 8.9381 24 14 2.1965 -11.1687 8.4985 25 1 3.3824 -12.0345 8.2765 26 1 1.8034 -11.2242 9.9294 27 1 1.0702 -11.6467 7.6571 28 7 2.2860 -1.0791 -0.0072 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 1.9711 2.1278 0.0012 33 1 3.6481 -3.3050 -0.0027 34 1 6.4668 -3.0711 -1.8729 35 1 7.0550 -4.6943 -1.4388 36 1 5.3897 -4.4796 -2.0288 37 1 4.4601 -5.5772 0.0715 38 1 6.1573 -5.8616 0.5266 39 1 5.8128 -4.5723 2.6165 40 1 4.1157 -4.2880 2.1613 41 1 4.5958 -7.0712 2.1174 42 1 2.9810 -8.0798 4.0248 43 1 4.6780 -8.3639 4.4804 44 1 2.2562 -8.6637 9.8433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758854583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:37 Heat of formation + Delta-G solvation = -61.693869 kcal Electronic energy + Delta-G solvation = -25785.778865 eV Core-core repulsion = 21863.520792 eV Total energy + Delta-G solvation = -3922.258072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.30153 -40.87932 -40.44873 -37.75424 -35.66699 -34.57727 -34.27536 -33.26692 -31.94314 -31.17376 -29.22290 -28.04598 -27.64458 -25.21385 -24.12567 -22.28420 -21.71836 -21.59800 -21.20971 -19.90637 -19.62876 -17.83057 -17.74441 -17.33468 -17.12358 -16.87120 -16.82929 -16.60500 -15.85400 -15.50679 -15.38412 -15.17812 -14.91619 -14.78168 -14.46116 -14.42741 -14.01158 -13.71183 -13.56328 -13.52424 -13.16315 -13.07988 -13.02107 -12.85754 -12.66139 -12.45429 -12.41619 -11.96796 -11.73426 -11.49132 -11.33647 -11.20178 -11.12059 -10.97229 -10.32732 -10.26787 -10.10869 -9.42440 -8.66669 -8.33635 -6.12215 0.26353 1.27598 1.44942 1.47705 1.49423 1.53789 1.57522 1.61745 2.26003 2.27322 2.29929 2.48663 3.00337 3.16328 3.32703 3.71260 3.78522 3.93119 4.02846 4.08450 4.10045 4.31591 4.36595 4.40802 4.44560 4.52205 4.61154 4.78472 4.83011 4.87275 4.94305 4.96126 5.00382 5.09940 5.11754 5.30351 5.39789 5.42223 5.43222 5.63419 6.13357 6.20498 6.27184 6.52927 6.75897 6.99193 7.07285 7.26515 8.75437 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.001972 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.368511 B =14194.243739 C =15545.099588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.031 4.031 3 C 0.001 3.999 4 N -0.518 5.518 5 H 0.439 0.561 6 C 0.111 3.889 7 C 0.606 3.394 8 O -0.571 6.571 9 N -0.693 5.693 10 C 0.145 3.855 11 H 0.078 0.922 12 C -0.155 4.155 13 C -0.123 4.123 14 C 0.119 3.881 15 N -0.709 5.709 16 C 0.530 3.470 17 O -0.570 6.570 18 C -0.128 4.128 19 S -0.158 6.158 20 C -0.545 4.545 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 1.000 3.000 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.261 1.261 28 N -0.460 5.460 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.230 0.770 33 H 0.416 0.584 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.420 0.580 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 14.136 -27.771 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.165 4.165 3 C -0.139 4.139 4 N -0.121 5.121 5 H 0.280 0.720 6 C -0.149 4.149 7 C 0.391 3.609 8 O -0.450 6.450 9 N -0.344 5.344 10 C 0.040 3.960 11 H 0.096 0.904 12 C -0.213 4.213 13 C -0.160 4.160 14 C -0.005 4.005 15 N -0.364 5.364 16 C 0.316 3.684 17 O -0.449 6.449 18 C -0.279 4.279 19 S 0.070 5.930 20 C -0.693 4.693 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 N -0.185 5.185 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.247 0.753 33 H 0.254 0.746 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.257 0.743 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.221 15.284 -26.501 30.673 hybrid contribution 0.030 -1.101 -0.145 1.111 sum 2.251 14.183 -26.645 30.269 Atomic orbital electron populations 1.20144 0.85347 1.03654 1.03254 1.21534 0.98422 0.88120 1.08418 1.23479 0.81887 1.02539 1.05972 1.42964 1.10212 1.06856 1.52024 0.71967 1.22515 0.93576 0.83477 1.15353 1.16609 0.85367 0.82754 0.76160 1.90813 1.24718 1.76642 1.52854 1.45816 1.11696 1.04290 1.72616 1.21084 0.87434 0.89092 0.98342 0.90380 1.22108 1.02757 1.02195 0.94225 1.22066 1.05280 0.96774 0.91919 1.21367 0.99593 0.84914 0.94612 1.45673 1.68966 1.12048 1.09675 1.20149 0.76038 0.89670 0.82539 1.90702 1.53639 1.38672 1.61849 1.23365 1.05899 0.98130 1.00497 1.85641 1.87982 1.14754 1.04671 1.23175 1.52882 0.93582 0.99671 0.89732 1.26165 0.94445 1.03576 0.95146 1.70185 1.45533 1.35049 1.04128 0.84984 0.79219 0.76372 0.77297 1.18576 1.20506 1.18556 1.70030 0.99615 1.32611 1.16212 0.90156 0.92199 0.88744 0.75319 0.74642 0.93696 0.89234 0.90852 0.87988 0.86548 0.93207 0.93202 0.74250 0.86974 0.86971 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.42 71.24 0.74 -0.04 16 2 C -0.03 -0.53 7.07 41.75 0.30 -0.24 16 3 C 0.00 0.01 11.91 83.52 0.99 1.01 16 4 N -0.52 -8.04 6.14 -188.02 -1.16 -9.19 16 5 H 0.44 4.93 8.96 -92.71 -0.83 4.10 16 6 C 0.11 2.42 7.95 136.28 1.08 3.51 16 7 C 0.61 14.06 7.78 86.66 0.67 14.74 16 8 O -0.57 -15.71 16.76 -4.04 -0.07 -15.78 16 9 N -0.69 -12.73 4.53 -445.81 -2.02 -14.75 16 10 C 0.14 2.16 2.57 44.99 0.12 2.27 16 11 H 0.08 1.48 7.58 -2.39 -0.02 1.46 16 12 C -0.15 -1.78 9.48 71.98 0.68 -1.09 16 13 C -0.12 -1.42 4.87 30.60 0.15 -1.27 16 14 C 0.12 2.61 5.56 86.38 0.48 3.09 16 15 N -0.71 -17.08 5.56 -463.04 -2.57 -19.66 16 16 C 0.53 19.74 7.85 87.66 0.69 20.43 16 17 O -0.57 -27.39 15.86 -3.04 -0.05 -27.44 16 18 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 19 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 20 C -0.55 -31.23 9.50 67.96 0.65 -30.59 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.65 5.49 84.86 0.47 1.11 16 23 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 24 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 28 N -0.46 -10.44 10.89 -177.64 -1.94 -12.38 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.23 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.42 7.11 8.28 -92.71 -0.77 6.34 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.30 7.75 -2.39 -0.02 1.29 16 41 H 0.42 6.57 8.47 -92.71 -0.79 5.78 16 42 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -88.70 395.81 -0.52 -89.22 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -1.33 Total: 22.33 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 7.46 Total: 8.34 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -7.39 Total: -112.30 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.12 Total: -43.22 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -88.70 -0.52 -89.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758854583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.522 kcal (2) G-P(sol) polarization free energy of solvation -88.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds