Wall clock time and date at job start Sat Apr 11 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46990 * 125.02933 * 6 5 4 8 8 O 1.21280 * 119.99895 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00167 * 359.97438 * 9 7 6 11 11 C 1.46501 * 120.00093 * 179.97438 * 9 7 6 12 12 C 1.53001 * 109.47103 * 89.99651 * 11 9 7 13 13 N 1.46501 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.34781 * 119.99704 * 179.97438 * 13 12 11 15 15 O 1.21284 * 120.00105 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99705 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47263 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00287 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99740 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00109 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00033 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47089 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47241 * 120.00222 * 22 20 18 25 25 H 1.48509 * 109.47241 * 240.00197 * 22 20 18 26 26 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 28 28 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 29 29 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 30 30 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 31 31 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46936 * 245.02312 * 6 5 4 33 33 H 1.08995 * 109.47043 * 5.02520 * 6 5 4 34 34 H 1.09000 * 109.46752 * 90.00297 * 10 9 7 35 35 H 1.08997 * 109.47865 * 210.00476 * 10 9 7 36 36 H 1.09000 * 109.47090 * 330.01037 * 10 9 7 37 37 H 1.08999 * 109.47032 * 209.99518 * 11 9 7 38 38 H 1.08994 * 109.46895 * 329.99669 * 11 9 7 39 39 H 1.09002 * 109.47175 * 300.00363 * 12 11 9 40 40 H 1.09001 * 109.47254 * 59.99858 * 12 11 9 41 41 H 0.97000 * 119.99978 * 359.97438 * 13 12 11 42 42 H 1.09002 * 109.47426 * 300.00517 * 16 14 13 43 43 H 1.09001 * 109.47156 * 60.00105 * 16 14 13 44 44 H 0.96998 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 6 4.7116 -2.4548 1.1669 8 8 3.7629 -2.4143 1.9214 9 7 5.6964 -3.3522 1.3702 10 6 6.8427 -3.4007 0.4592 11 6 5.6206 -4.2791 2.5021 12 6 4.8962 -5.5552 2.0688 13 7 4.8210 -6.4823 3.2005 14 6 4.2209 -7.6800 3.0517 15 8 3.7436 -7.9903 1.9808 16 6 4.1440 -8.6340 4.2157 17 16 3.2869 -10.1434 3.7031 18 6 3.3380 -11.0518 5.2121 19 1 3.8085 -10.6233 6.0847 20 6 2.7735 -12.3180 5.2794 21 7 2.2004 -12.8405 4.2157 22 14 2.8282 -13.2813 6.8788 23 1 3.5234 -12.4783 7.9167 24 1 1.4435 -13.5760 7.3268 25 1 3.5609 -14.5552 6.6647 26 7 2.2741 -1.0600 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5140 29 1 -0.3634 -0.8902 -0.5136 30 1 1.9923 2.1597 -0.0004 31 1 4.4891 1.3484 0.0011 32 1 4.8267 -2.0663 -0.9283 33 1 5.6883 -0.8904 0.0931 34 1 7.6242 -2.7335 0.8229 35 1 7.2272 -4.4195 0.4129 36 1 6.5295 -3.0849 -0.5359 37 1 6.6279 -4.5286 2.8355 38 1 5.0730 -3.8102 3.3196 39 1 3.8889 -5.3057 1.7353 40 1 5.4438 -6.0240 1.2512 41 1 5.2030 -6.2343 4.0569 42 1 5.1516 -8.8837 4.5481 43 1 3.5973 -8.1654 5.0341 44 1 1.8062 -13.7255 4.2626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758913321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:40 Heat of formation + Delta-G solvation = 17.006879 kcal Electronic energy + Delta-G solvation = -25758.540568 eV Core-core repulsion = 21839.695216 eV Total energy + Delta-G solvation = -3918.845352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54319 -40.21618 -39.06290 -36.39946 -34.62298 -34.11705 -32.41695 -31.20418 -30.38133 -29.67409 -28.48068 -27.20048 -26.06099 -25.44207 -23.17307 -21.46992 -20.62809 -20.23679 -19.50083 -17.90319 -17.72796 -17.48359 -16.71560 -16.40033 -15.72901 -15.65128 -15.39212 -14.97617 -14.79303 -14.42499 -14.19416 -14.04759 -13.84948 -13.69732 -13.53664 -13.24099 -13.15218 -12.98896 -12.84879 -12.56418 -12.54508 -12.28598 -12.21126 -12.11255 -11.42503 -11.05985 -11.00752 -10.75782 -10.74233 -10.38731 -9.80228 -9.47999 -9.40288 -9.18629 -9.06793 -8.91183 -8.82995 -8.21662 -6.48632 -6.20522 -3.90976 1.55977 1.99250 2.09724 2.47620 2.59163 3.09549 3.11132 3.22528 3.29761 3.35309 3.72744 3.86206 4.08203 4.21389 4.40587 4.44718 4.57237 4.61149 4.63806 4.68266 4.90219 5.00657 5.11138 5.14627 5.15657 5.19619 5.38070 5.44233 5.55437 5.61348 5.63076 5.65433 5.75405 5.85116 5.90440 6.02394 6.14928 6.43364 6.57264 6.61834 6.81447 7.51789 7.61029 7.66032 7.69465 8.36684 8.61223 9.24810 10.87001 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.001781 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.018699 B =15720.404900 C =16689.810325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.066 3.934 3 C -0.267 4.267 4 C 0.051 3.949 5 N -0.368 5.368 6 C 0.120 3.880 7 C 0.499 3.501 8 O -0.498 6.498 9 N -0.614 5.614 10 C 0.071 3.929 11 C 0.108 3.892 12 C 0.108 3.892 13 N -0.737 5.737 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.263 5.263 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.173 0.827 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.108 30.668 -9.011 33.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.296 4.296 4 C -0.094 4.094 5 N -0.150 5.150 6 C -0.005 4.005 7 C 0.284 3.716 8 O -0.370 6.370 9 N -0.350 5.350 10 C -0.072 4.072 11 C -0.015 4.015 12 C -0.018 4.018 13 N -0.393 5.393 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.085 5.085 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.190 0.810 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.865 28.675 -10.486 32.087 hybrid contribution 1.082 0.713 2.613 2.916 sum 10.947 29.388 -7.873 32.334 Atomic orbital electron populations 1.20171 0.86648 1.03173 1.03097 1.22452 0.97159 0.90780 0.99782 1.21380 0.91600 0.99766 1.16838 1.22495 0.99832 0.84402 1.02634 1.48011 1.04974 1.04156 1.57858 1.21485 0.86164 0.93545 0.99324 1.20599 0.82643 0.81686 0.86704 1.90836 1.30997 1.69483 1.45710 1.47681 1.22339 1.35182 1.29826 1.21950 0.88157 1.03945 0.93116 1.21600 1.01713 0.89193 0.89023 1.21550 1.01614 0.88758 0.89877 1.45831 1.61781 1.17434 1.14219 1.20315 0.76769 0.81120 0.89906 1.90710 1.44958 1.75309 1.27971 1.23524 1.05757 1.01934 0.99113 1.85422 1.72772 1.07335 1.17874 1.22912 1.43785 1.04060 0.97545 0.90851 1.25002 0.94540 0.96613 0.97510 1.70030 1.35207 1.16673 1.28364 0.86105 0.78007 0.79416 0.81887 1.19623 1.20564 1.20573 1.77533 0.85746 1.22304 1.22872 0.90484 0.90547 0.90874 0.83501 0.80999 0.86714 0.85783 0.91891 0.90023 0.90840 0.89500 0.89061 0.91197 0.91570 0.76804 0.89160 0.89129 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.00 0.38 -0.23 16 2 C 0.07 0.75 7.22 -82.41 -0.59 0.15 16 3 C -0.27 -2.38 10.74 -40.01 -0.43 -2.81 16 4 C 0.05 0.40 11.45 -17.22 -0.20 0.20 16 5 N -0.37 -3.74 3.40 -62.54 -0.21 -3.96 16 6 C 0.12 0.80 5.54 -5.19 -0.03 0.77 16 7 C 0.50 5.05 7.70 -10.99 -0.08 4.97 16 8 O -0.50 -7.70 15.29 5.56 0.08 -7.62 16 9 N -0.61 -4.65 2.87 -181.58 -0.52 -5.17 16 10 C 0.07 0.23 10.24 59.85 0.61 0.85 16 11 C 0.11 0.93 5.52 -4.04 -0.02 0.91 16 12 C 0.11 1.34 6.00 -4.04 -0.02 1.32 16 13 N -0.74 -10.19 5.56 -60.29 -0.33 -10.52 16 14 C 0.53 10.33 7.85 -10.99 -0.09 10.24 16 15 O -0.52 -12.25 15.86 5.55 0.09 -12.16 16 16 C -0.15 -3.15 6.16 36.00 0.22 -2.92 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 22 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 N -0.26 -3.61 11.64 33.67 0.39 -3.21 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 32 H 0.12 0.56 7.40 -51.93 -0.38 0.18 16 33 H 0.12 0.27 8.04 -51.93 -0.42 -0.15 16 34 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 36 H 0.07 0.12 6.44 -51.93 -0.33 -0.22 16 37 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 38 H 0.09 0.92 7.42 -51.93 -0.39 0.54 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -42.41 394.42 -7.60 -50.01 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.48 Total: -0.58 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.06 Total: 0.29 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.06 Total: -48.62 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -42.41 -7.60 -50.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758913321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.012 kcal (2) G-P(sol) polarization free energy of solvation -42.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds