Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46990 * 125.02933 * 6 5 4 8 8 O 1.21280 * 119.99895 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00167 * 359.97438 * 9 7 6 11 11 C 1.46501 * 120.00093 * 179.97438 * 9 7 6 12 12 C 1.53001 * 109.47103 * 89.99651 * 11 9 7 13 13 N 1.46501 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.34781 * 119.99704 * 179.97438 * 13 12 11 15 15 O 1.21284 * 120.00105 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99705 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47263 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00287 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99740 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00109 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00033 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47089 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47241 * 120.00222 * 22 20 18 25 25 H 1.48509 * 109.47241 * 240.00197 * 22 20 18 26 26 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 28 28 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 29 29 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 30 30 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 31 31 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46936 * 245.02312 * 6 5 4 33 33 H 1.08995 * 109.47043 * 5.02520 * 6 5 4 34 34 H 1.09000 * 109.46752 * 90.00297 * 10 9 7 35 35 H 1.08997 * 109.47865 * 210.00476 * 10 9 7 36 36 H 1.09000 * 109.47090 * 330.01037 * 10 9 7 37 37 H 1.08999 * 109.47032 * 209.99518 * 11 9 7 38 38 H 1.08994 * 109.46895 * 329.99669 * 11 9 7 39 39 H 1.09002 * 109.47175 * 300.00363 * 12 11 9 40 40 H 1.09001 * 109.47254 * 59.99858 * 12 11 9 41 41 H 0.97000 * 119.99978 * 359.97438 * 13 12 11 42 42 H 1.09002 * 109.47426 * 300.00517 * 16 14 13 43 43 H 1.09001 * 109.47156 * 60.00105 * 16 14 13 44 44 H 0.96998 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 6 4.7116 -2.4548 1.1669 8 8 3.7629 -2.4143 1.9214 9 7 5.6964 -3.3522 1.3702 10 6 6.8427 -3.4007 0.4592 11 6 5.6206 -4.2791 2.5021 12 6 4.8962 -5.5552 2.0688 13 7 4.8210 -6.4823 3.2005 14 6 4.2209 -7.6800 3.0517 15 8 3.7436 -7.9903 1.9808 16 6 4.1440 -8.6340 4.2157 17 16 3.2869 -10.1434 3.7031 18 6 3.3380 -11.0518 5.2121 19 1 3.8085 -10.6233 6.0847 20 6 2.7735 -12.3180 5.2794 21 7 2.2004 -12.8405 4.2157 22 14 2.8282 -13.2813 6.8788 23 1 3.5234 -12.4783 7.9167 24 1 1.4435 -13.5760 7.3268 25 1 3.5609 -14.5552 6.6647 26 7 2.2741 -1.0600 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5140 29 1 -0.3634 -0.8902 -0.5136 30 1 1.9923 2.1597 -0.0004 31 1 4.4891 1.3484 0.0011 32 1 4.8267 -2.0663 -0.9283 33 1 5.6883 -0.8904 0.0931 34 1 7.6242 -2.7335 0.8229 35 1 7.2272 -4.4195 0.4129 36 1 6.5295 -3.0849 -0.5359 37 1 6.6279 -4.5286 2.8355 38 1 5.0730 -3.8102 3.3196 39 1 3.8889 -5.3057 1.7353 40 1 5.4438 -6.0240 1.2512 41 1 5.2030 -6.2343 4.0569 42 1 5.1516 -8.8837 4.5481 43 1 3.5973 -8.1654 5.0341 44 1 1.8062 -13.7255 4.2626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758913321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -16.085886 kcal Electronic energy + Delta-G solvation = -25759.975578 eV Core-core repulsion = 21839.695216 eV Total energy + Delta-G solvation = -3920.280362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19871 -41.03627 -40.48836 -37.27345 -35.71995 -34.87142 -34.60344 -32.19133 -31.29983 -30.50063 -29.54335 -27.73486 -27.67326 -26.73511 -24.08721 -22.12072 -21.93755 -21.05641 -20.24327 -19.82195 -18.43684 -18.14209 -17.84399 -17.66545 -16.90204 -16.80837 -16.69359 -16.42292 -15.94917 -15.60212 -15.23001 -15.04056 -14.84240 -14.57972 -14.50351 -14.31413 -14.07573 -13.83269 -13.63988 -13.55315 -13.25254 -13.24815 -13.18221 -12.92912 -12.91184 -12.89570 -12.60870 -12.44015 -11.73732 -11.46428 -11.21158 -11.17610 -11.05020 -10.30217 -10.25362 -10.14221 -9.86082 -9.47378 -8.69916 -8.36538 -6.15345 0.92214 1.21276 1.37072 1.40603 1.45460 1.48800 1.53384 1.57344 1.86790 1.91228 2.25250 2.38501 2.97690 3.27960 3.32564 3.64050 3.76230 3.90251 3.95888 3.99720 4.04169 4.08116 4.26468 4.29547 4.32383 4.42611 4.46970 4.65682 4.70035 4.77900 4.81313 4.84673 4.93060 4.96517 5.02192 5.22319 5.23173 5.40406 5.41308 5.75574 6.07023 6.18411 6.25623 6.41117 6.82567 7.00234 7.04606 7.16439 8.73122 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.001781 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.018699 B =15720.404900 C =16689.810325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.044 3.956 3 C -0.286 4.286 4 C 0.062 3.938 5 N -0.376 5.376 6 C 0.117 3.883 7 C 0.490 3.510 8 O -0.565 6.565 9 N -0.609 5.609 10 C 0.061 3.939 11 C 0.117 3.883 12 C 0.113 3.887 13 N -0.709 5.709 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.085 0.915 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.002 2.998 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.272 1.272 26 N -0.330 5.330 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.169 0.831 31 H 0.221 0.779 32 H 0.132 0.868 33 H 0.178 0.822 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.069 0.931 41 H 0.419 0.581 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.446 32.851 -7.934 36.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.123 4.123 3 C -0.315 4.315 4 C -0.082 4.082 5 N -0.159 5.159 6 C -0.007 4.007 7 C 0.277 3.723 8 O -0.442 6.442 9 N -0.343 5.343 10 C -0.079 4.079 11 C -0.007 4.007 12 C -0.012 4.012 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.823 3.177 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.198 1.198 26 N -0.153 5.153 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.187 0.813 31 H 0.238 0.762 32 H 0.149 0.851 33 H 0.195 0.805 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.257 0.743 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.279 30.903 -9.408 34.926 hybrid contribution 0.141 0.150 2.221 2.231 sum 13.421 31.053 -7.186 34.584 Atomic orbital electron populations 1.20240 0.85788 1.03850 1.03147 1.22968 0.98255 0.91493 0.99553 1.21765 0.91981 1.00207 1.17511 1.23286 1.01113 0.83876 0.99969 1.48283 1.04566 1.05448 1.57565 1.21899 0.86868 0.93758 0.98138 1.21332 0.81914 0.82186 0.86853 1.90810 1.33602 1.71547 1.48223 1.47826 1.22890 1.33725 1.29858 1.22318 0.87174 1.05100 0.93354 1.21507 1.02895 0.87183 0.89119 1.21597 0.99961 0.90175 0.89514 1.45529 1.59614 1.15560 1.15749 1.20153 0.76865 0.82367 0.88708 1.90698 1.47555 1.76677 1.29665 1.23358 1.06212 0.98498 0.99822 1.85634 1.74899 1.12276 1.20023 1.23241 1.43986 1.04539 0.97522 0.89736 1.26174 0.93746 0.97773 1.01651 1.70197 1.36272 1.17278 1.31110 0.84865 0.78286 0.77709 0.76820 1.17917 1.20059 1.19755 1.77429 0.88029 1.24377 1.25467 0.90679 0.87954 0.92062 0.81324 0.76207 0.85054 0.80471 0.88900 0.89764 0.88873 0.85490 0.90589 0.95324 0.91247 0.74301 0.86471 0.87323 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.45 71.23 0.74 -0.55 16 2 C 0.04 1.03 7.22 43.10 0.31 1.34 16 3 C -0.29 -4.81 10.74 21.99 0.24 -4.58 16 4 C 0.06 0.83 11.45 83.54 0.96 1.78 16 5 N -0.38 -7.25 3.40 -351.79 -1.20 -8.44 16 6 C 0.12 1.27 5.54 85.63 0.47 1.75 16 7 C 0.49 9.52 7.70 87.66 0.68 10.20 16 8 O -0.56 -18.19 15.29 -3.03 -0.05 -18.23 16 9 N -0.61 -7.95 2.87 -846.77 -2.43 -10.38 16 10 C 0.06 0.16 10.24 127.77 1.31 1.47 16 11 C 0.12 1.82 5.52 86.38 0.48 2.30 16 12 C 0.11 2.79 6.00 86.38 0.52 3.31 16 13 N -0.71 -18.89 5.56 -463.05 -2.57 -21.47 16 14 C 0.53 20.74 7.85 87.65 0.69 21.43 16 15 O -0.57 -28.01 15.86 -3.04 -0.05 -28.06 16 16 C -0.13 -5.20 6.16 71.23 0.44 -4.76 16 17 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 18 C -0.55 -31.63 9.50 67.95 0.65 -30.98 16 19 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 20 C 0.01 0.64 5.49 84.86 0.47 1.11 16 21 N -0.91 -56.96 13.22 21.65 0.29 -56.68 16 22 Si 1.00 44.19 29.55 68.60 2.03 46.21 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 N -0.33 -9.47 11.64 -47.39 -0.55 -10.02 16 27 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.22 0.48 8.06 -2.91 -0.02 0.45 16 32 H 0.13 0.96 7.40 -2.39 -0.02 0.94 16 33 H 0.18 -0.12 8.04 -2.39 -0.02 -0.14 16 34 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.08 0.25 8.07 -2.39 -0.02 0.23 16 36 H 0.09 -0.09 6.44 -2.39 -0.02 -0.10 16 37 H 0.13 1.00 8.07 -2.39 -0.02 0.98 16 38 H 0.08 1.48 7.42 -2.39 -0.02 1.46 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.42 7.70 8.47 -92.71 -0.79 6.91 16 42 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 43 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -101.39 394.42 2.47 -98.92 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.23 Total: 14.35 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 7.94 Total: 3.83 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -6.47 Total: -106.99 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -0.09 Total: -46.29 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -101.39 2.47 -98.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758913321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.830 kcal (2) G-P(sol) polarization free energy of solvation -101.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds