Wall clock time and date at job start Sat Apr 11 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38044 * 126.29506 * 2 1 4 4 C 1.47436 * 126.41165 * 0.02562 * 3 2 1 5 5 O 1.21608 * 119.99562 * 327.48524 * 4 3 2 6 6 N 1.34768 * 120.00301 * 147.48745 * 4 3 2 7 7 C 1.46499 * 119.99892 * 4.09420 * 6 4 3 8 8 C 1.46500 * 120.00452 * 184.09876 * 6 4 3 9 9 C 1.53001 * 109.47310 * 89.99749 * 8 6 4 10 10 N 1.46498 * 109.47074 * 180.02562 * 9 8 6 11 11 C 1.34772 * 119.99635 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00733 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99881 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47207 * 180.02562 * 13 11 10 15 15 C 1.76196 * 99.99742 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00352 * 359.97438 * 15 14 13 17 17 C 1.38804 * 119.99862 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99868 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00003 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46957 * 60.00440 * 19 17 15 21 21 H 1.48500 * 109.46886 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47178 * 300.00413 * 19 17 15 23 23 C 1.41282 * 107.17596 * 180.02562 * 3 2 1 24 24 N 1.30449 * 108.02402 * 0.02562 * 23 3 2 25 25 N 1.34262 * 126.29271 * 179.69529 * 2 1 3 26 26 C 1.46497 * 125.75267 * 359.97032 * 25 2 1 27 27 H 1.09007 * 109.47322 * 90.00166 * 1 2 3 28 28 H 1.08999 * 109.47434 * 329.99805 * 1 2 3 29 29 H 1.08997 * 109.47382 * 209.99665 * 1 2 3 30 30 H 1.09000 * 109.47140 * 95.61983 * 7 6 4 31 31 H 1.08993 * 109.47640 * 215.62012 * 7 6 4 32 32 H 1.09004 * 109.47360 * 335.62767 * 7 6 4 33 33 H 1.08995 * 109.47208 * 210.00299 * 8 6 4 34 34 H 1.09004 * 109.46589 * 329.99538 * 8 6 4 35 35 H 1.09004 * 109.46678 * 300.00522 * 9 8 6 36 36 H 1.09001 * 109.46804 * 60.00012 * 9 8 6 37 37 H 0.96998 * 120.00052 * 359.97438 * 10 9 8 38 38 H 1.09003 * 109.46904 * 299.99975 * 13 11 10 39 39 H 1.08997 * 109.46952 * 60.00208 * 13 11 10 40 40 H 0.97003 * 119.99833 * 180.02562 * 18 17 15 41 41 H 1.08005 * 125.99064 * 179.97438 * 23 3 2 42 42 H 1.09003 * 109.47168 * 90.00533 * 26 25 2 43 43 H 1.09008 * 109.47031 * 210.00618 * 26 25 2 44 44 H 1.09002 * 109.47670 * 330.00257 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.8569 2.8369 -0.5651 6 7 2.6254 3.4562 0.6278 7 6 3.9092 3.0914 1.2319 8 6 2.1455 4.8382 0.7057 9 6 1.3086 5.0168 1.9740 10 7 0.8283 6.3986 2.0515 11 6 0.0650 6.7893 3.0913 12 8 -0.2239 5.9971 3.9630 13 6 -0.4287 8.2109 3.1714 14 16 -1.4189 8.4221 4.6717 15 6 -1.8528 10.1226 4.5149 16 1 -1.5065 10.6923 3.6652 17 6 -2.6398 10.7302 5.4835 18 7 -3.0615 10.0361 6.5194 19 14 -3.0993 12.5332 5.3177 20 1 -3.8596 12.7365 4.0584 21 1 -3.9383 12.9385 6.4740 22 1 -1.8648 13.3580 5.2892 23 6 3.6589 0.6499 -0.0006 24 7 3.6340 -0.6544 -0.0015 25 7 2.3016 -1.0821 0.0058 26 6 1.8500 -2.4757 0.0138 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 0.8899 0.5138 29 1 -0.3634 -0.8900 0.5138 30 1 4.7155 3.3106 0.5319 31 1 4.0564 3.6653 2.1468 32 1 3.9111 2.0269 1.4664 33 1 2.9974 5.5175 0.7339 34 1 1.5329 5.0598 -0.1682 35 1 0.4567 4.3373 1.9457 36 1 1.9213 4.7951 2.8478 37 1 1.0596 7.0323 1.3545 38 1 0.4233 8.8903 3.2002 39 1 -1.0409 8.4327 2.2973 40 1 -3.6118 10.4606 7.1961 41 1 4.5449 1.2677 -0.0012 42 1 1.7377 -2.8272 -1.0119 43 1 2.5849 -3.0928 0.5309 44 1 0.8916 -2.5442 0.5284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758913445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:42 Heat of formation + Delta-G solvation = 15.045916 kcal Electronic energy + Delta-G solvation = -26051.132704 eV Core-core repulsion = 22132.202319 eV Total energy + Delta-G solvation = -3918.930386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95331 -39.78714 -38.96298 -36.21344 -34.63037 -33.88991 -32.42419 -32.40403 -30.61754 -28.79061 -27.78009 -27.20047 -26.66945 -25.45367 -23.56567 -22.06220 -20.98126 -20.32392 -19.19967 -17.84189 -17.65377 -16.61154 -16.55619 -16.26649 -16.14437 -15.69527 -15.31398 -15.03655 -14.80333 -14.77888 -14.14942 -13.92931 -13.72908 -13.70713 -13.47941 -13.20640 -13.12151 -13.05322 -12.99134 -12.57439 -12.53458 -12.30087 -12.17264 -12.02908 -11.36382 -11.31416 -11.02331 -11.01835 -10.75444 -10.11785 -9.82612 -9.80422 -9.41808 -9.07441 -9.04200 -8.88923 -8.86168 -8.21379 -6.47535 -6.19301 -3.89772 1.16289 1.80819 1.88427 2.53039 3.01905 3.13497 3.14661 3.25348 3.29721 3.36603 3.81205 3.98580 4.11964 4.22768 4.43179 4.50026 4.57692 4.69793 4.73536 4.80059 4.85174 4.91111 5.05264 5.09113 5.14169 5.15676 5.21354 5.28270 5.36303 5.46377 5.58112 5.65551 5.73782 5.88309 5.92943 5.97265 6.16864 6.21023 6.39117 6.63221 7.06204 7.13849 7.61494 7.72353 7.97392 8.37303 8.64377 9.25792 10.88064 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027302 B = 0.001742 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.328365 B =16073.174216 C =16494.457597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.156 3.844 3 C -0.297 4.297 4 C 0.597 3.403 5 O -0.536 6.536 6 N -0.609 5.609 7 C 0.065 3.935 8 C 0.108 3.892 9 C 0.108 3.892 10 N -0.736 5.736 11 C 0.533 3.467 12 O -0.517 6.517 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.078 3.922 24 N -0.299 5.299 25 N -0.363 5.363 26 C 0.095 3.905 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.195 0.805 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.350 -22.310 -16.298 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.023 3.977 3 C -0.311 4.311 4 C 0.386 3.614 5 O -0.413 6.413 6 N -0.343 5.343 7 C -0.078 4.078 8 C -0.016 4.016 9 C -0.018 4.018 10 N -0.392 5.392 11 C 0.319 3.681 12 O -0.391 6.391 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.109 4.109 24 N -0.119 5.119 25 N -0.143 5.143 26 C -0.046 4.046 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.212 0.788 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.892 -24.727 -14.960 32.511 hybrid contribution -0.090 3.038 -1.366 3.332 sum 14.802 -21.689 -16.326 30.920 Atomic orbital electron populations 1.20611 0.85956 1.04476 1.04425 1.21485 0.94910 0.86217 0.95049 1.19877 0.93105 0.93316 1.24830 1.17300 0.82820 0.83748 0.77557 1.90794 1.24686 1.81575 1.44258 1.47428 1.21487 1.08903 1.56447 1.22238 0.84259 1.02753 0.98526 1.21566 0.99108 0.82040 0.98854 1.21563 0.98520 0.84039 0.97637 1.45834 1.54915 1.11869 1.26562 1.20301 0.77170 0.89908 0.80733 1.90703 1.55697 1.54480 1.38246 1.23530 1.04510 0.94745 1.07565 1.85399 1.62242 1.13909 1.21841 1.22835 1.38042 0.95711 1.11819 0.90950 1.24994 0.95082 0.99031 0.94483 1.70013 1.33523 1.36537 1.10247 0.86221 0.78538 0.82882 0.77837 1.19937 1.20832 1.19953 1.24273 0.97242 0.91888 0.97499 1.77203 0.96104 1.13241 1.25305 1.48341 1.04018 1.06416 1.55496 1.21996 1.01471 0.77185 1.03952 0.89006 0.88516 0.90801 0.92133 0.90806 0.89673 0.89705 0.88863 0.91344 0.91606 0.76767 0.89164 0.89126 0.92151 0.78843 0.90158 0.88741 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.49 36.00 0.34 -0.35 16 2 C 0.16 1.41 7.00 -81.60 -0.57 0.84 16 3 C -0.30 -2.98 5.53 -105.07 -0.58 -3.56 16 4 C 0.60 6.85 7.43 -12.52 -0.09 6.76 16 5 O -0.54 -7.84 15.52 5.27 0.08 -7.76 16 6 N -0.61 -5.59 2.87 -182.85 -0.53 -6.11 16 7 C 0.07 0.38 9.10 59.85 0.54 0.93 16 8 C 0.11 0.99 5.58 -4.04 -0.02 0.97 16 9 C 0.11 1.35 6.00 -4.04 -0.02 1.32 16 10 N -0.74 -10.04 5.56 -60.29 -0.33 -10.38 16 11 C 0.53 10.18 7.85 -10.98 -0.09 10.09 16 12 O -0.52 -12.09 15.86 5.56 0.09 -12.00 16 13 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 19 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.08 0.65 9.57 -16.98 -0.16 0.49 16 24 N -0.30 -2.84 12.50 30.86 0.39 -2.45 16 25 N -0.36 -2.95 3.98 -63.34 -0.25 -3.20 16 26 C 0.09 0.36 11.24 59.85 0.67 1.03 16 27 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.10 0.88 7.47 -51.93 -0.39 0.49 16 29 H 0.07 0.33 7.04 -51.93 -0.37 -0.03 16 30 H 0.06 0.23 7.87 -51.93 -0.41 -0.18 16 31 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 32 H 0.08 0.49 4.73 -51.93 -0.25 0.25 16 33 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.09 0.95 7.37 -51.93 -0.38 0.57 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.40 4.08 8.47 -40.82 -0.35 3.74 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.20 1.00 6.15 -52.48 -0.32 0.68 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 0.29 8.14 -51.92 -0.42 -0.14 16 44 H 0.09 0.16 7.01 -51.93 -0.36 -0.20 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -39.73 386.29 -6.97 -46.69 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.17 Total: -0.18 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 0.44 Total: 2.56 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.01 Total: -47.75 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.17 Total: -19.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.73 -6.97 -46.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758913445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.740 kcal (2) G-P(sol) polarization free energy of solvation -39.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds