Wall clock time and date at job start Sat Apr 11 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38044 * 126.29506 * 2 1 4 4 C 1.47436 * 126.41165 * 0.02562 * 3 2 1 5 5 O 1.21608 * 119.99562 * 327.48524 * 4 3 2 6 6 N 1.34768 * 120.00301 * 147.48745 * 4 3 2 7 7 C 1.46499 * 119.99892 * 4.09420 * 6 4 3 8 8 C 1.46500 * 120.00452 * 184.09876 * 6 4 3 9 9 C 1.53001 * 109.47310 * 89.99749 * 8 6 4 10 10 N 1.46498 * 109.47074 * 180.02562 * 9 8 6 11 11 C 1.34772 * 119.99635 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00733 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99881 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47207 * 180.02562 * 13 11 10 15 15 C 1.76196 * 99.99742 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00352 * 359.97438 * 15 14 13 17 17 C 1.38804 * 119.99862 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99868 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00003 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46957 * 60.00440 * 19 17 15 21 21 H 1.48500 * 109.46886 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47178 * 300.00413 * 19 17 15 23 23 C 1.41282 * 107.17596 * 180.02562 * 3 2 1 24 24 N 1.30449 * 108.02402 * 0.02562 * 23 3 2 25 25 N 1.34262 * 126.29271 * 179.69529 * 2 1 3 26 26 C 1.46497 * 125.75267 * 359.97032 * 25 2 1 27 27 H 1.09007 * 109.47322 * 90.00166 * 1 2 3 28 28 H 1.08999 * 109.47434 * 329.99805 * 1 2 3 29 29 H 1.08997 * 109.47382 * 209.99665 * 1 2 3 30 30 H 1.09000 * 109.47140 * 95.61983 * 7 6 4 31 31 H 1.08993 * 109.47640 * 215.62012 * 7 6 4 32 32 H 1.09004 * 109.47360 * 335.62767 * 7 6 4 33 33 H 1.08995 * 109.47208 * 210.00299 * 8 6 4 34 34 H 1.09004 * 109.46589 * 329.99538 * 8 6 4 35 35 H 1.09004 * 109.46678 * 300.00522 * 9 8 6 36 36 H 1.09001 * 109.46804 * 60.00012 * 9 8 6 37 37 H 0.96998 * 120.00052 * 359.97438 * 10 9 8 38 38 H 1.09003 * 109.46904 * 299.99975 * 13 11 10 39 39 H 1.08997 * 109.46952 * 60.00208 * 13 11 10 40 40 H 0.97003 * 119.99833 * 180.02562 * 18 17 15 41 41 H 1.08005 * 125.99064 * 179.97438 * 23 3 2 42 42 H 1.09003 * 109.47168 * 90.00533 * 26 25 2 43 43 H 1.09008 * 109.47031 * 210.00618 * 26 25 2 44 44 H 1.09002 * 109.47670 * 330.00257 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.8569 2.8369 -0.5651 6 7 2.6254 3.4562 0.6278 7 6 3.9092 3.0914 1.2319 8 6 2.1455 4.8382 0.7057 9 6 1.3086 5.0168 1.9740 10 7 0.8283 6.3986 2.0515 11 6 0.0650 6.7893 3.0913 12 8 -0.2239 5.9971 3.9630 13 6 -0.4287 8.2109 3.1714 14 16 -1.4189 8.4221 4.6717 15 6 -1.8528 10.1226 4.5149 16 1 -1.5065 10.6923 3.6652 17 6 -2.6398 10.7302 5.4835 18 7 -3.0615 10.0361 6.5194 19 14 -3.0993 12.5332 5.3177 20 1 -3.8596 12.7365 4.0584 21 1 -3.9383 12.9385 6.4740 22 1 -1.8648 13.3580 5.2892 23 6 3.6589 0.6499 -0.0006 24 7 3.6340 -0.6544 -0.0015 25 7 2.3016 -1.0821 0.0058 26 6 1.8500 -2.4757 0.0138 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 0.8899 0.5138 29 1 -0.3634 -0.8900 0.5138 30 1 4.7155 3.3106 0.5319 31 1 4.0564 3.6653 2.1468 32 1 3.9111 2.0269 1.4664 33 1 2.9974 5.5175 0.7339 34 1 1.5329 5.0598 -0.1682 35 1 0.4567 4.3373 1.9457 36 1 1.9213 4.7951 2.8478 37 1 1.0596 7.0323 1.3545 38 1 0.4233 8.8903 3.2002 39 1 -1.0409 8.4327 2.2973 40 1 -3.6118 10.4606 7.1961 41 1 4.5449 1.2677 -0.0012 42 1 1.7377 -2.8272 -1.0119 43 1 2.5849 -3.0928 0.5309 44 1 0.8916 -2.5442 0.5284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758913445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:42 Heat of formation + Delta-G solvation = -15.218110 kcal Electronic energy + Delta-G solvation = -26052.445051 eV Core-core repulsion = 22132.202319 eV Total energy + Delta-G solvation = -3920.242732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58697 -40.80737 -40.24243 -37.14855 -35.70987 -34.58406 -34.55795 -33.06580 -31.85349 -29.93525 -28.43428 -27.80691 -27.61108 -27.33635 -24.49489 -22.75298 -21.95907 -21.43575 -19.99700 -19.75583 -18.35389 -17.89858 -17.55243 -17.13038 -16.87470 -16.86588 -16.71819 -16.57181 -16.00903 -15.62274 -15.41738 -15.13179 -14.74144 -14.65294 -14.32468 -14.27488 -14.04997 -13.73151 -13.59627 -13.55825 -13.50913 -13.15929 -13.11074 -13.06526 -12.85671 -12.76206 -12.61279 -12.33690 -11.99614 -11.74405 -11.11696 -11.09394 -10.91105 -10.40433 -10.27110 -10.17709 -9.83493 -9.56144 -8.66073 -8.33306 -6.11712 0.48994 1.13885 1.25311 1.37506 1.45239 1.46909 1.56177 1.59841 1.83525 2.25433 2.28745 2.49144 3.00709 3.33550 3.46256 3.54404 3.81197 3.84971 3.95523 4.02731 4.07481 4.25600 4.31528 4.32052 4.36354 4.41430 4.46819 4.52461 4.58335 4.65659 4.69355 4.75859 4.90461 4.92771 4.98028 4.98335 5.29906 5.37635 5.42956 5.54904 5.84762 6.20933 6.33401 6.48351 6.51014 7.07723 7.16011 7.23138 8.75697 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027302 B = 0.001742 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.328365 B =16073.174216 C =16494.457597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.147 3.853 3 C -0.322 4.322 4 C 0.591 3.409 5 O -0.579 6.579 6 N -0.607 5.607 7 C 0.059 3.941 8 C 0.116 3.884 9 C 0.113 3.887 10 N -0.708 5.708 11 C 0.534 3.466 12 O -0.568 6.568 13 C -0.128 4.128 14 S -0.154 6.154 15 C -0.547 4.547 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.261 1.261 23 C 0.086 3.914 24 N -0.324 5.324 25 N -0.362 5.362 26 C 0.083 3.917 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.420 0.580 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.222 0.778 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.141 -21.663 -17.981 32.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.013 3.987 3 C -0.337 4.337 4 C 0.382 3.618 5 O -0.459 6.459 6 N -0.339 5.339 7 C -0.082 4.082 8 C -0.007 4.007 9 C -0.012 4.012 10 N -0.363 5.363 11 C 0.320 3.680 12 O -0.446 6.446 13 C -0.279 4.279 14 S 0.073 5.927 15 C -0.694 4.694 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.185 1.185 23 C -0.101 4.101 24 N -0.143 5.143 25 N -0.141 5.141 26 C -0.056 4.056 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.257 0.743 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.238 0.762 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.757 -24.097 -16.688 33.763 hybrid contribution -0.575 2.698 -0.905 2.904 sum 16.182 -21.399 -17.593 32.082 Atomic orbital electron populations 1.20602 0.85114 1.04649 1.04717 1.21778 0.95671 0.86597 0.94665 1.19978 0.94272 0.92883 1.26576 1.17606 0.82385 0.84630 0.77216 1.90760 1.26545 1.82289 1.46351 1.47534 1.22210 1.08477 1.55676 1.22482 0.83271 1.02969 0.99506 1.21522 0.99846 0.82993 0.96342 1.21598 0.97756 0.82282 0.99591 1.45520 1.52700 1.12873 1.25229 1.20117 0.77566 0.89010 0.81333 1.90693 1.57937 1.55457 1.40518 1.23367 1.04289 0.96339 1.03945 1.85603 1.64658 1.14995 1.27438 1.23183 1.38237 0.95660 1.12363 0.89761 1.26148 0.94745 1.04462 0.93863 1.70185 1.34413 1.38904 1.11315 0.84990 0.78640 0.76107 0.78169 1.18717 1.20449 1.18535 1.24662 0.97444 0.91731 0.96257 1.77155 0.97110 1.13811 1.26236 1.48663 1.03455 1.07508 1.54482 1.22372 1.02668 0.75231 1.05315 0.88618 0.90932 0.87949 0.89206 0.89959 0.89709 0.85921 0.89669 0.94478 0.91669 0.74269 0.86653 0.87177 0.92015 0.76212 0.88807 0.88001 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.49 71.23 0.68 -0.67 16 2 C 0.15 2.62 7.00 42.14 0.29 2.92 16 3 C -0.32 -6.37 5.53 -20.15 -0.11 -6.48 16 4 C 0.59 13.58 7.43 86.67 0.64 14.23 16 5 O -0.58 -17.50 15.52 -4.06 -0.06 -17.57 16 6 N -0.61 -10.32 2.87 -850.67 -2.44 -12.77 16 7 C 0.06 0.55 9.10 127.77 1.16 1.71 16 8 C 0.12 1.92 5.58 86.38 0.48 2.41 16 9 C 0.11 2.74 6.00 86.38 0.52 3.26 16 10 N -0.71 -18.20 5.56 -463.05 -2.57 -20.78 16 11 C 0.53 20.17 7.85 87.66 0.69 20.86 16 12 O -0.57 -27.24 15.86 -3.04 -0.05 -27.29 16 13 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 14 S -0.15 -8.65 20.57 -56.49 -1.16 -9.82 16 15 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 16 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 17 C 0.01 0.72 5.49 84.86 0.47 1.18 16 18 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 19 Si 1.00 43.71 29.55 68.60 2.03 45.73 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 23 C 0.09 1.33 9.57 85.65 0.82 2.15 16 24 N -0.32 -5.79 12.50 -56.28 -0.70 -6.49 16 25 N -0.36 -5.51 3.98 -354.31 -1.41 -6.92 16 26 C 0.08 0.49 11.24 127.77 1.44 1.93 16 27 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 1.42 7.47 -2.39 -0.02 1.41 16 29 H 0.10 0.81 7.04 -2.39 -0.02 0.79 16 30 H 0.09 0.35 7.87 -2.39 -0.02 0.33 16 31 H 0.08 0.66 8.11 -2.39 -0.02 0.64 16 32 H 0.08 0.82 4.73 -2.38 -0.01 0.81 16 33 H 0.12 1.15 8.07 -2.39 -0.02 1.13 16 34 H 0.08 1.61 7.37 -2.38 -0.02 1.60 16 35 H 0.04 1.15 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.42 7.36 8.47 -92.71 -0.79 6.58 16 38 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.22 1.79 6.15 -2.91 -0.02 1.77 16 42 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.11 0.17 7.01 -2.39 -0.02 0.15 16 Total: -1.00 -90.58 386.29 2.32 -88.26 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.25 Total: 15.66 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 8.16 Total: 8.11 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -6.84 Total: -103.09 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.11 Total: -44.85 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -90.58 2.32 -88.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758913445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.041 kcal (2) G-P(sol) polarization free energy of solvation -90.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds