Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47250 * 54.38761 * 3 2 1 5 5 N 1.46891 * 109.47533 * 294.38466 * 3 2 1 6 6 C 1.46906 * 111.00317 * 154.14993 * 5 3 2 7 7 C 1.52994 * 109.47454 * 174.81182 * 6 5 3 8 8 N 1.46499 * 109.47393 * 180.02562 * 7 6 5 9 9 C 1.34783 * 120.00081 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99519 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99919 * 179.97438 * 9 8 7 12 12 S 1.80996 * 109.47147 * 179.97438 * 11 9 8 13 13 C 1.76196 * 100.00233 * 180.02562 * 12 11 9 14 14 H 1.08014 * 119.99716 * 0.02562 * 13 12 11 15 15 C 1.38795 * 120.00259 * 180.02562 * 13 12 11 16 16 N 1.31632 * 119.99978 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47346 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47238 * 120.00002 * 17 15 13 20 20 H 1.48498 * 109.46948 * 239.99928 * 17 15 13 21 21 C 1.50705 * 109.46823 * 174.38284 * 3 2 1 22 22 C 1.38242 * 119.97637 * 259.99893 * 21 3 2 23 23 C 1.38202 * 120.02595 * 180.02562 * 22 21 3 24 24 C 1.38456 * 119.97409 * 0.23694 * 23 22 21 25 25 F 1.35102 * 120.02914 * 179.72561 * 24 23 22 26 26 C 1.38470 * 119.94681 * 359.49082 * 24 23 22 27 27 C 1.38200 * 119.97173 * 0.52976 * 26 24 23 28 28 H 1.09005 * 109.47161 * 306.22963 * 1 2 3 29 29 H 1.09002 * 109.47520 * 66.23329 * 1 2 3 30 30 H 1.08997 * 109.47439 * 186.23841 * 1 2 3 31 31 H 1.08994 * 109.46996 * 240.00655 * 2 1 3 32 32 H 1.08992 * 109.47377 * 120.00390 * 2 1 3 33 33 H 1.00907 * 111.00055 * 30.19722 * 5 3 2 34 34 H 1.08996 * 109.47044 * 294.81605 * 6 5 3 35 35 H 1.08997 * 109.47034 * 54.81033 * 6 5 3 36 36 H 1.09010 * 109.47378 * 300.00509 * 7 6 5 37 37 H 1.08997 * 109.47122 * 59.99905 * 7 6 5 38 38 H 0.97000 * 119.99849 * 0.02562 * 8 7 6 39 39 H 1.09005 * 109.46869 * 300.00329 * 11 9 8 40 40 H 1.09005 * 109.46910 * 59.99637 * 11 9 8 41 41 H 0.96998 * 119.99825 * 180.02562 * 16 15 13 42 42 H 1.08001 * 119.98807 * 0.02793 * 22 21 3 43 43 H 1.07996 * 120.01310 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.01155 * 180.25129 * 26 24 23 45 45 H 1.08001 * 119.98221 * 179.74851 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 0.8355 5 7 1.6641 2.0948 -1.2613 6 6 1.5638 3.5506 -1.0918 7 6 1.2990 4.2051 -2.4491 8 7 1.1997 5.6570 -2.2801 9 6 0.9671 6.4454 -3.3482 10 8 0.8406 5.9529 -4.4493 11 6 0.8644 7.9388 -3.1742 12 16 0.5512 8.7131 -4.7799 13 6 0.4796 10.4055 -4.2949 14 1 0.6158 10.6763 -3.2581 15 6 0.2484 11.3906 -5.2448 16 7 0.0830 11.0606 -6.5083 17 14 0.1732 13.1848 -4.7305 18 1 0.3896 13.2893 -3.2651 19 1 1.2289 13.9486 -5.4429 20 1 -1.1591 13.7430 -5.0747 21 6 3.5405 1.4448 0.1391 22 6 4.1198 1.6922 1.3697 23 6 5.4958 1.6950 1.4983 24 6 6.2944 1.4549 0.3930 25 9 7.6397 1.4629 0.5163 26 6 5.7129 1.2016 -0.8380 27 6 4.3367 1.1997 -0.9642 28 1 -0.3634 0.6074 0.8290 29 1 -0.3634 0.4142 -0.9405 30 1 -0.3634 -1.0215 0.1117 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.8032 1.7128 -1.6235 34 1 0.7446 3.7815 -0.4110 35 1 2.4975 3.9335 -0.6798 36 1 2.1183 3.9742 -3.1300 37 1 0.3654 3.8222 -2.8611 38 1 1.3012 6.0508 -1.3995 39 1 0.0453 8.1697 -2.4931 40 1 1.7982 8.3217 -2.7625 41 1 -0.0783 11.7491 -7.1723 42 1 3.4968 1.8832 2.2309 43 1 5.9481 1.8887 2.4596 44 1 6.3348 1.0101 -1.6999 45 1 3.8831 1.0062 -1.9250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = -68.743257 kcal Electronic energy + Delta-G solvation = -25579.464749 eV Core-core repulsion = 21636.981031 eV Total energy + Delta-G solvation = -3942.483719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.16961 -39.97808 -39.13784 -37.38988 -35.00140 -32.74327 -32.42633 -31.46248 -31.09568 -29.76092 -27.52368 -25.60987 -25.34518 -23.44932 -22.70108 -22.23594 -20.82661 -20.30183 -17.98236 -17.85596 -17.00910 -16.59861 -16.29073 -16.09521 -15.85876 -15.68079 -15.37579 -15.11811 -14.80414 -14.53636 -14.25791 -13.97612 -13.87716 -13.72184 -13.32670 -13.23606 -13.11431 -13.00548 -12.57167 -12.54101 -12.31266 -12.04109 -11.59962 -11.44544 -11.41343 -11.35583 -11.18156 -11.06969 -11.01813 -10.75642 -9.80644 -9.42746 -9.42106 -9.07794 -8.95991 -8.88599 -8.87244 -8.22911 -6.49782 -6.21710 -3.92118 0.78643 0.92226 2.95517 3.10721 3.21589 3.21932 3.27351 3.31485 3.55657 3.95263 3.98484 4.20355 4.25307 4.41808 4.46424 4.56878 4.62414 4.70567 4.83589 4.84997 4.96641 5.04840 5.13525 5.14621 5.20375 5.23025 5.24903 5.48717 5.55171 5.58038 5.62051 5.68674 5.75797 5.78270 5.80446 5.88986 5.91277 5.95068 6.13729 6.14762 6.53546 6.56149 6.64423 6.93315 7.59904 7.69559 8.35493 8.61627 9.23746 10.85787 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.001853 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.349929 B =15109.093297 C =16301.853608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C 0.130 3.870 4 H 0.057 0.943 5 N -0.680 5.680 6 C 0.050 3.950 7 C 0.125 3.875 8 N -0.739 5.739 9 C 0.532 3.468 10 O -0.516 6.516 11 C -0.153 4.153 12 S -0.061 6.061 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.089 4.089 22 C -0.089 4.089 23 C -0.158 4.158 24 C 0.094 3.906 25 F -0.143 7.143 26 C -0.158 4.158 27 C -0.056 4.056 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.349 0.651 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -24.421 19.381 31.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.161 4.161 3 C 0.020 3.980 4 H 0.075 0.925 5 N -0.314 5.314 6 C -0.079 4.079 7 C 0.000 4.000 8 N -0.394 5.394 9 C 0.318 3.682 10 O -0.390 6.390 11 C -0.304 4.304 12 S 0.166 5.834 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.090 4.090 22 C -0.108 4.108 23 C -0.176 4.176 24 C 0.075 3.925 25 F -0.121 7.121 26 C -0.177 4.177 27 C -0.074 4.074 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.230 0.770 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.190 -25.173 17.104 31.057 hybrid contribution -0.320 2.062 2.592 3.327 sum 5.870 -23.112 19.695 30.927 Atomic orbital electron populations 1.21860 0.95398 1.02386 1.01960 1.21721 0.95887 0.95074 1.03418 1.20413 0.91042 0.95089 0.91442 0.92511 1.60255 1.40041 1.03484 1.27604 1.22122 1.01276 0.87987 0.96541 1.21109 1.02381 0.79990 0.96531 1.45901 1.75992 1.06632 1.10925 1.20288 0.75350 0.88606 0.83924 1.90707 1.47753 1.75725 1.24816 1.23528 1.04956 0.93727 1.08164 1.85407 1.93513 1.02481 1.02000 1.22907 1.56865 0.91614 0.96898 0.90887 1.25000 0.94589 0.99568 0.94499 1.70029 1.45550 1.33887 1.00805 0.86112 0.77913 0.82752 0.78681 1.19634 1.20554 1.20576 1.19881 0.95367 1.00509 0.93205 1.20870 0.93778 0.98775 0.97367 1.21068 0.94069 1.04253 0.98245 1.17792 0.76936 1.02693 0.95054 1.91500 1.29812 1.94074 1.96742 1.21261 0.96264 1.03712 0.96436 1.20938 0.91521 0.95531 0.99407 0.92661 0.92336 0.92030 0.90541 0.90955 0.83028 0.94415 0.90318 0.90736 0.91826 0.76960 0.89257 0.89215 0.92236 0.85373 0.84951 0.84797 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.64 37.16 0.36 -0.32 16 2 C -0.12 -0.58 5.49 -26.73 -0.15 -0.73 16 3 C 0.13 0.75 2.24 -68.87 -0.15 0.59 16 4 H 0.06 0.31 7.70 -51.93 -0.40 -0.09 16 5 N -0.68 -4.53 5.52 -107.96 -0.60 -5.12 16 6 C 0.05 0.39 5.57 -3.82 -0.02 0.37 16 7 C 0.12 1.39 5.98 -4.05 -0.02 1.36 16 8 N -0.74 -9.62 5.56 -60.29 -0.33 -9.95 16 9 C 0.53 9.90 7.85 -10.98 -0.09 9.82 16 10 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16 11 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 12 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 13 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 14 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 17 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.09 -0.62 4.70 -104.62 -0.49 -1.11 16 22 C -0.09 -0.60 9.67 -39.59 -0.38 -0.98 16 23 C -0.16 -1.20 10.03 -39.51 -0.40 -1.60 16 24 C 0.09 0.86 7.30 -39.42 -0.29 0.57 16 25 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 26 C -0.16 -1.33 10.03 -39.51 -0.40 -1.73 16 27 C -0.06 -0.44 9.32 -39.59 -0.37 -0.80 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.25 6.67 -51.93 -0.35 -0.10 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 2.08 6.65 -39.29 -0.26 1.82 16 34 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 36 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 40 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.13 0.60 8.04 -52.49 -0.42 0.18 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.14 1.06 7.72 -52.49 -0.40 0.65 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -34.54 396.52 -10.10 -44.63 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.79 Total: 0.89 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.98 Total: -10.38 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.20 Total: -40.55 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.54 -10.10 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.112 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds