Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47222 * 2 1 4 4 H 1.08996 * 109.46570 * 305.60913 * 3 2 1 5 5 N 1.46889 * 109.47555 * 65.61451 * 3 2 1 6 6 C 1.46905 * 111.00364 * 205.85932 * 5 3 2 7 7 C 1.52990 * 109.47289 * 185.18577 * 6 5 3 8 8 N 1.46499 * 109.46989 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00321 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00424 * 180.02562 * 9 8 7 12 12 S 1.80996 * 109.47425 * 179.97438 * 11 9 8 13 13 C 1.76198 * 100.00346 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99623 * 0.02562 * 13 12 11 15 15 C 1.38800 * 120.00233 * 179.97438 * 13 12 11 16 16 N 1.31630 * 119.99835 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99943 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46885 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47010 * 119.99975 * 17 15 13 20 20 H 1.48502 * 109.46784 * 239.99868 * 17 15 13 21 21 C 1.50701 * 109.46883 * 185.61572 * 3 2 1 22 22 C 1.38243 * 119.97178 * 279.72347 * 21 3 2 23 23 C 1.38209 * 120.02619 * 179.73014 * 22 21 3 24 24 C 1.38459 * 119.96927 * 0.52019 * 23 22 21 25 25 F 1.35101 * 120.02349 * 179.72875 * 24 23 22 26 26 C 1.38456 * 119.95148 * 359.75125 * 24 23 22 27 27 C 1.38200 * 119.97686 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.47527 * 293.77557 * 1 2 3 29 29 H 1.09008 * 109.47091 * 53.76990 * 1 2 3 30 30 H 1.08997 * 109.47436 * 173.76538 * 1 2 3 31 31 H 1.09000 * 109.47454 * 239.98963 * 2 1 3 32 32 H 1.09003 * 109.46672 * 119.99377 * 2 1 3 33 33 H 1.00905 * 110.99993 * 329.80879 * 5 3 2 34 34 H 1.09000 * 109.46231 * 305.18475 * 6 5 3 35 35 H 1.08994 * 109.47051 * 65.18008 * 6 5 3 36 36 H 1.08997 * 109.47371 * 299.99706 * 7 6 5 37 37 H 1.09003 * 109.47288 * 59.99611 * 7 6 5 38 38 H 0.97005 * 120.00268 * 359.97438 * 8 7 6 39 39 H 1.09006 * 109.46993 * 299.99728 * 11 9 8 40 40 H 1.08994 * 109.47155 * 59.99231 * 11 9 8 41 41 H 0.97001 * 119.99708 * 180.02562 * 16 15 13 42 42 H 1.07997 * 119.99308 * 359.97438 * 22 21 3 43 43 H 1.07999 * 120.01364 * 180.29469 * 23 22 21 44 44 H 1.08004 * 120.01945 * 179.97438 * 26 24 23 45 45 H 1.07995 * 119.99464 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9844 -0.8355 5 7 1.6642 2.0948 1.2613 6 6 1.5638 3.5506 1.0917 7 6 1.2990 4.2051 2.4489 8 7 1.1995 5.6569 2.2798 9 6 0.9680 6.4455 3.3480 10 8 0.8415 5.9532 4.4492 11 6 0.8651 7.9389 3.1740 12 16 0.5519 8.7133 4.7796 13 6 0.4803 10.4056 4.2944 14 1 0.6155 10.6763 3.2576 15 6 0.2489 11.3908 5.2444 16 7 0.0826 11.0608 6.5077 17 14 0.1722 13.1849 4.7298 18 1 0.3888 13.2892 3.2644 19 1 -1.1603 13.7423 5.0747 20 1 1.2279 13.9495 5.4414 21 6 3.5406 1.4447 -0.1390 22 6 4.3368 1.2050 0.9653 23 6 5.7130 1.2012 0.8380 24 6 6.2943 1.4483 -0.3942 25 9 7.6395 1.4503 -0.5188 26 6 5.4959 1.6937 -1.4984 27 6 4.1199 1.6914 -1.3698 28 1 -0.3634 0.4143 0.9404 29 1 -0.3634 0.6074 -0.8290 30 1 -0.3634 -1.0215 -0.1116 31 1 1.8933 -0.5140 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 0.8033 1.7128 1.6235 34 1 2.4975 3.9334 0.6797 35 1 0.7446 3.7814 0.4109 36 1 0.3654 3.8222 2.8610 37 1 2.1183 3.9742 3.1298 38 1 1.3011 6.0507 1.3992 39 1 1.7986 8.3218 2.7615 40 1 0.0456 8.1698 2.4935 41 1 -0.0795 11.7493 7.1716 42 1 3.8833 1.0168 1.9272 43 1 6.3348 1.0093 1.6999 44 1 5.9481 1.8870 -2.4600 45 1 3.4968 1.8824 -2.2310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = -68.724636 kcal Electronic energy + Delta-G solvation = -25579.311963 eV Core-core repulsion = 21636.829052 eV Total energy + Delta-G solvation = -3942.482911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.16989 -39.97804 -39.13758 -37.39018 -35.00141 -32.74360 -32.42644 -31.46192 -31.09607 -29.76108 -27.52417 -25.61026 -25.34550 -23.44812 -22.70158 -22.23596 -20.82621 -20.30175 -17.98232 -17.85601 -17.00984 -16.59831 -16.29078 -16.09429 -15.85879 -15.68205 -15.37623 -15.11778 -14.80413 -14.53573 -14.25829 -13.97617 -13.87672 -13.72152 -13.32668 -13.23791 -13.11429 -13.00601 -12.56974 -12.54107 -12.31246 -12.04109 -11.59933 -11.44394 -11.41307 -11.35657 -11.18252 -11.06975 -11.01820 -10.75651 -9.80648 -9.42703 -9.42092 -9.07797 -8.96083 -8.88619 -8.87226 -8.22897 -6.49785 -6.21723 -3.92111 0.78639 0.92245 2.95499 3.10709 3.21577 3.21946 3.27330 3.31481 3.55642 3.95289 3.98471 4.20356 4.25339 4.41837 4.46397 4.56887 4.62403 4.70547 4.83581 4.84989 4.96705 5.04861 5.13520 5.14639 5.20371 5.23004 5.24876 5.48711 5.55173 5.58055 5.62059 5.68702 5.75785 5.78268 5.80455 5.89001 5.91267 5.95115 6.13748 6.14776 6.53548 6.56165 6.64406 6.93289 7.59930 7.69522 8.35507 8.61620 9.23734 10.85767 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.001852 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.785053 B =15114.368286 C =16305.406473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C 0.130 3.870 4 H 0.057 0.943 5 N -0.680 5.680 6 C 0.050 3.950 7 C 0.125 3.875 8 N -0.739 5.739 9 C 0.532 3.468 10 O -0.516 6.516 11 C -0.153 4.153 12 S -0.061 6.061 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.089 4.089 22 C -0.056 4.056 23 C -0.158 4.158 24 C 0.094 3.906 25 F -0.143 7.143 26 C -0.158 4.158 27 C -0.089 4.089 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.349 0.651 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -24.414 -19.378 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.161 4.161 3 C 0.020 3.980 4 H 0.075 0.925 5 N -0.314 5.314 6 C -0.079 4.079 7 C 0.000 4.000 8 N -0.394 5.394 9 C 0.318 3.682 10 O -0.390 6.390 11 C -0.304 4.304 12 S 0.166 5.834 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.090 4.090 22 C -0.074 4.074 23 C -0.177 4.177 24 C 0.075 3.925 25 F -0.121 7.121 26 C -0.176 4.176 27 C -0.108 4.108 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.186 -25.168 -17.101 31.050 hybrid contribution -0.319 2.060 -2.592 3.327 sum 5.867 -23.108 -19.693 30.923 Atomic orbital electron populations 1.21859 0.95399 1.02386 1.01961 1.21722 0.95885 0.95075 1.03418 1.20411 0.91044 0.95089 0.91441 0.92511 1.60255 1.40044 1.03483 1.27602 1.22122 1.01277 0.87988 0.96542 1.21108 1.02382 0.79989 0.96530 1.45901 1.76004 1.06628 1.10914 1.20288 0.75351 0.88606 0.83926 1.90708 1.47749 1.75737 1.24811 1.23526 1.04953 0.93728 1.08167 1.85407 1.93504 1.02483 1.02009 1.22907 1.56882 0.91613 0.96885 0.90887 1.25001 0.94588 0.99567 0.94500 1.70030 1.45528 1.33885 1.00825 0.86112 0.77914 0.82752 0.78683 1.19633 1.20569 1.20558 1.19883 0.95366 1.00528 0.93194 1.20941 0.91518 0.95517 0.99421 1.21262 0.96268 1.03741 0.96407 1.17789 0.76939 1.02694 0.95052 1.91500 1.29823 1.94075 1.96733 1.21068 0.94071 1.04229 0.98268 1.20870 0.93777 0.98770 0.97371 0.92337 0.92662 0.92029 0.90955 0.90542 0.83028 0.90318 0.94413 0.91824 0.90735 0.76958 0.89215 0.89258 0.92236 0.84054 0.84796 0.84950 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.64 37.16 0.36 -0.32 16 2 C -0.12 -0.58 5.49 -26.73 -0.15 -0.73 16 3 C 0.13 0.75 2.24 -68.87 -0.15 0.59 16 4 H 0.06 0.31 7.70 -51.93 -0.40 -0.09 16 5 N -0.68 -4.52 5.51 -107.96 -0.60 -5.12 16 6 C 0.05 0.39 5.57 -3.83 -0.02 0.37 16 7 C 0.12 1.39 5.98 -4.05 -0.02 1.36 16 8 N -0.74 -9.61 5.56 -60.30 -0.33 -9.95 16 9 C 0.53 9.90 7.85 -10.99 -0.09 9.82 16 10 O -0.52 -11.77 15.86 5.55 0.09 -11.68 16 11 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 12 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 13 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 14 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 17 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.09 -0.62 4.70 -104.62 -0.49 -1.11 16 22 C -0.06 -0.44 9.32 -39.59 -0.37 -0.81 16 23 C -0.16 -1.33 10.03 -39.51 -0.40 -1.73 16 24 C 0.09 0.86 7.30 -39.42 -0.29 0.57 16 25 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 26 C -0.16 -1.20 10.03 -39.52 -0.40 -1.60 16 27 C -0.09 -0.60 9.67 -39.59 -0.38 -0.98 16 28 H 0.06 0.25 6.67 -51.93 -0.35 -0.10 16 29 H 0.05 0.24 8.14 -51.92 -0.42 -0.19 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.35 2.08 6.65 -39.29 -0.26 1.82 16 34 H 0.08 0.65 7.95 -51.93 -0.41 0.23 16 35 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.14 1.06 7.71 -52.49 -0.40 0.66 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.13 0.60 8.04 -52.49 -0.42 0.18 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -34.53 396.51 -10.09 -44.63 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.79 Total: 0.89 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.98 Total: -10.39 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.20 Total: -40.54 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.53 -10.09 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.096 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds