Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46932 * 2 1 4 4 N 1.30446 * 125.99270 * 269.95682 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.78107 * 4 3 2 6 6 H 0.96998 * 125.75489 * 180.29779 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47422 * 126.41169 * 180.28593 * 8 7 5 10 10 O 1.21602 * 119.99928 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00533 * 359.97438 * 9 8 7 12 12 C 1.46492 * 120.00305 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47330 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47281 * 64.99921 * 13 12 11 15 15 C 1.53006 * 109.47485 * 185.00187 * 13 12 11 16 16 N 1.46505 * 109.47000 * 305.00109 * 13 12 11 17 17 C 1.34780 * 119.99666 * 154.99685 * 16 13 12 18 18 O 1.21282 * 120.00133 * 0.02562 * 17 16 13 19 19 C 1.50704 * 119.99519 * 179.97438 * 17 16 13 20 20 S 1.81006 * 109.46790 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99788 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00202 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00129 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99767 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00296 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46977 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47286 * 119.99884 * 25 23 21 28 28 H 1.48507 * 109.46981 * 240.00160 * 25 23 21 29 29 H 1.08990 * 109.47294 * 59.99630 * 1 2 3 30 30 H 1.08996 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46599 * 299.99395 * 1 2 3 32 32 H 1.09003 * 109.47328 * 240.00667 * 2 1 3 33 33 H 1.08996 * 109.47856 * 120.00002 * 2 1 3 34 34 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 35 35 H 0.97000 * 119.99512 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47372 * 300.00110 * 12 11 9 37 37 H 1.09007 * 109.47409 * 59.99845 * 12 11 9 38 38 H 1.08998 * 109.47077 * 59.99610 * 15 13 12 39 39 H 1.08996 * 109.46899 * 180.02562 * 15 13 12 40 40 H 1.08994 * 109.46614 * 300.00122 * 15 13 12 41 41 H 0.96994 * 119.99829 * 334.99689 * 16 13 12 42 42 H 1.09004 * 109.47299 * 299.99931 * 19 17 16 43 43 H 1.08995 * 109.46957 * 60.00102 * 19 17 16 44 44 H 0.97004 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2885 2.1434 -1.0554 5 7 2.7293 3.4062 -0.6441 6 1 2.9825 4.1367 -1.2300 7 6 2.7454 3.4353 0.6980 8 6 2.3091 2.2035 1.1433 9 6 2.1595 1.7837 2.5485 10 8 1.7625 0.6644 2.8097 11 7 2.4626 2.6405 3.5438 12 6 2.3134 2.2235 4.9402 13 6 2.7216 3.3739 5.8625 14 1 2.0288 4.2056 5.7343 15 6 2.6854 2.8994 7.3167 16 7 4.0783 3.8122 5.5255 17 6 4.4704 5.0699 5.8102 18 8 3.7003 5.8386 6.3459 19 6 5.8662 5.5205 5.4641 20 16 6.0861 7.2448 5.9688 21 6 7.7531 7.5024 5.4596 22 1 8.3048 6.7006 4.9914 23 6 8.3576 8.7354 5.6611 24 7 7.6857 9.7122 6.2330 25 14 10.1247 9.0088 5.1207 26 1 10.6537 7.7631 4.5094 27 1 10.1731 10.1089 4.1243 28 1 10.9523 9.3715 6.2992 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.0408 4.2704 1.3159 35 1 2.7796 3.5332 3.3355 36 1 1.2741 1.9560 5.1305 37 1 2.9515 1.3607 5.1320 38 1 3.3781 2.0677 7.4448 39 1 2.9757 3.7192 7.9736 40 1 1.6760 2.5734 7.5673 41 1 4.6943 3.1972 5.0974 42 1 6.5901 4.8944 5.9859 43 1 6.0196 5.4339 4.3884 44 1 8.1080 10.5741 6.3736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285628246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -17.493433 kcal Electronic energy + Delta-G solvation = -26416.164940 eV Core-core repulsion = 22495.823542 eV Total energy + Delta-G solvation = -3920.341398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.76862 -39.85424 -39.01325 -36.37351 -34.58375 -33.74863 -32.49742 -31.70002 -30.60743 -30.57103 -28.65236 -26.55797 -25.55175 -24.30304 -23.29037 -21.88038 -20.61741 -20.42436 -19.80962 -18.83171 -17.91021 -16.79766 -16.64690 -16.37891 -15.74511 -15.51422 -15.04318 -14.97204 -14.86911 -14.70817 -14.30313 -14.14616 -14.10714 -13.37410 -13.35033 -13.08327 -12.96865 -12.71534 -12.61810 -12.59255 -12.09219 -11.90752 -11.75259 -11.45236 -11.18558 -11.12660 -11.08820 -11.06579 -10.81435 -10.05098 -9.88387 -9.87470 -9.53375 -9.38538 -9.15159 -9.07994 -9.05419 -8.31316 -6.57877 -6.28732 -3.99693 1.15571 1.85025 2.33912 2.87035 2.94623 3.05135 3.16224 3.21445 3.23779 3.27634 3.62368 4.11915 4.13680 4.29042 4.40530 4.77390 4.88323 4.92229 5.03360 5.04284 5.06822 5.12726 5.17310 5.23379 5.34849 5.37755 5.48343 5.53531 5.60858 5.73424 5.78631 5.89290 5.89809 5.98986 6.04355 6.06516 6.16709 6.22580 6.52109 6.72397 7.14419 7.33484 7.53112 7.58192 8.06308 8.28482 8.49243 9.17062 10.78626 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.002438 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.187889 B =11483.904245 C =13243.964531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.139 3.861 4 N -0.299 5.299 5 N -0.459 5.459 6 H 0.446 0.554 7 C 0.110 3.890 8 C -0.291 4.291 9 C 0.596 3.404 10 O -0.540 6.540 11 N -0.729 5.729 12 C 0.116 3.884 13 C 0.131 3.869 14 H 0.095 0.905 15 C -0.161 4.161 16 N -0.737 5.737 17 C 0.533 3.467 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.187 0.813 35 H 0.401 0.599 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 -17.309 -10.088 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.030 4.030 4 N -0.121 5.121 5 N -0.162 5.162 6 H 0.291 0.709 7 C -0.043 4.043 8 C -0.306 4.306 9 C 0.383 3.617 10 O -0.418 6.418 11 N -0.381 5.381 12 C -0.008 4.008 13 C 0.026 3.974 14 H 0.113 0.887 15 C -0.220 4.220 16 N -0.393 5.393 17 C 0.319 3.681 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.204 0.796 35 H 0.235 0.765 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.392 -16.608 -10.202 23.649 hybrid contribution 2.789 0.129 -0.624 2.860 sum -10.603 -16.480 -10.826 22.388 Atomic orbital electron populations 1.21614 0.93943 1.02107 1.01995 1.20129 0.96538 0.87999 1.04159 1.22486 0.94857 0.96990 0.88625 1.77189 1.21905 0.90538 1.22466 1.46150 1.51345 1.13205 1.05537 0.70916 1.23261 0.96428 0.98801 0.85848 1.20256 1.20128 0.95688 0.94523 1.17205 0.76603 0.84388 0.83464 1.90746 1.46793 1.20035 1.84257 1.45827 1.69016 1.17373 1.05905 1.21683 1.02647 0.96913 0.79587 1.21156 0.85084 0.96743 0.94412 0.88708 1.22113 1.02319 1.02184 0.95408 1.46170 1.14488 1.13900 1.64717 1.20338 0.89262 0.80892 0.77639 1.90715 1.54455 1.53026 1.40569 1.23543 0.95245 1.07002 1.04709 1.85409 1.17119 1.01134 1.79635 1.22896 0.98244 1.00955 1.46296 0.90900 1.24994 0.98869 0.94973 0.94751 1.70020 1.36878 1.03188 1.40131 0.86124 0.82637 0.78332 0.78451 1.19627 1.20560 1.20523 0.92964 0.91858 0.92190 0.90600 0.88057 0.79579 0.76460 0.89905 0.90702 0.92167 0.91091 0.91482 0.76700 0.89199 0.89341 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.46 5.97 -27.88 -0.17 -0.63 16 3 C 0.14 1.48 6.52 -82.02 -0.53 0.95 16 4 N -0.30 -3.15 12.63 33.90 0.43 -2.73 16 5 N -0.46 -3.46 7.29 30.85 0.22 -3.23 16 6 H 0.45 1.94 8.96 -182.72 -1.64 0.31 16 7 C 0.11 0.81 11.52 -16.56 -0.19 0.62 16 8 C -0.29 -2.89 6.13 -105.07 -0.64 -3.53 16 9 C 0.60 6.37 7.81 -12.52 -0.10 6.27 16 10 O -0.54 -7.16 14.92 5.28 0.08 -7.09 16 11 N -0.73 -6.25 5.38 -61.39 -0.33 -6.58 16 12 C 0.12 0.96 5.23 -4.05 -0.02 0.94 16 13 C 0.13 1.26 2.73 -67.93 -0.19 1.08 16 14 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 15 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 16 N -0.74 -8.07 4.52 -53.80 -0.24 -8.31 16 17 C 0.53 8.63 7.81 -10.98 -0.09 8.55 16 18 O -0.51 -10.42 15.53 5.56 0.09 -10.33 16 19 C -0.15 -2.82 6.16 36.01 0.22 -2.60 16 20 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 21 C -0.54 -14.65 9.50 30.94 0.29 -14.36 16 22 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 23 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 24 N -0.87 -25.40 13.22 55.49 0.73 -24.67 16 25 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.04 6.55 -51.93 -0.34 0.70 16 34 H 0.19 0.78 7.46 -52.49 -0.39 0.39 16 35 H 0.40 3.00 7.06 -40.82 -0.29 2.71 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 42 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 43 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -36.26 391.07 -8.75 -45.01 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.60 Total: 2.75 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.79 Total: -2.76 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.81 Total: -45.51 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.16 Total: -17.42 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.26 -8.75 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285628246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.514 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds