Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46932 * 2 1 4 4 N 1.30446 * 125.99270 * 269.95682 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.78107 * 4 3 2 6 6 H 0.96998 * 125.75489 * 180.29779 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47422 * 126.41169 * 180.28593 * 8 7 5 10 10 O 1.21602 * 119.99928 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00533 * 359.97438 * 9 8 7 12 12 C 1.46492 * 120.00305 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47330 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47281 * 64.99921 * 13 12 11 15 15 C 1.53006 * 109.47485 * 185.00187 * 13 12 11 16 16 N 1.46505 * 109.47000 * 305.00109 * 13 12 11 17 17 C 1.34780 * 119.99666 * 154.99685 * 16 13 12 18 18 O 1.21282 * 120.00133 * 0.02562 * 17 16 13 19 19 C 1.50704 * 119.99519 * 179.97438 * 17 16 13 20 20 S 1.81006 * 109.46790 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99788 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00202 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00129 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99767 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00296 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46977 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47286 * 119.99884 * 25 23 21 28 28 H 1.48507 * 109.46981 * 240.00160 * 25 23 21 29 29 H 1.08990 * 109.47294 * 59.99630 * 1 2 3 30 30 H 1.08996 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46599 * 299.99395 * 1 2 3 32 32 H 1.09003 * 109.47328 * 240.00667 * 2 1 3 33 33 H 1.08996 * 109.47856 * 120.00002 * 2 1 3 34 34 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 35 35 H 0.97000 * 119.99512 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47372 * 300.00110 * 12 11 9 37 37 H 1.09007 * 109.47409 * 59.99845 * 12 11 9 38 38 H 1.08998 * 109.47077 * 59.99610 * 15 13 12 39 39 H 1.08996 * 109.46899 * 180.02562 * 15 13 12 40 40 H 1.08994 * 109.46614 * 300.00122 * 15 13 12 41 41 H 0.96994 * 119.99829 * 334.99689 * 16 13 12 42 42 H 1.09004 * 109.47299 * 299.99931 * 19 17 16 43 43 H 1.08995 * 109.46957 * 60.00102 * 19 17 16 44 44 H 0.97004 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2885 2.1434 -1.0554 5 7 2.7293 3.4062 -0.6441 6 1 2.9825 4.1367 -1.2300 7 6 2.7454 3.4353 0.6980 8 6 2.3091 2.2035 1.1433 9 6 2.1595 1.7837 2.5485 10 8 1.7625 0.6644 2.8097 11 7 2.4626 2.6405 3.5438 12 6 2.3134 2.2235 4.9402 13 6 2.7216 3.3739 5.8625 14 1 2.0288 4.2056 5.7343 15 6 2.6854 2.8994 7.3167 16 7 4.0783 3.8122 5.5255 17 6 4.4704 5.0699 5.8102 18 8 3.7003 5.8386 6.3459 19 6 5.8662 5.5205 5.4641 20 16 6.0861 7.2448 5.9688 21 6 7.7531 7.5024 5.4596 22 1 8.3048 6.7006 4.9914 23 6 8.3576 8.7354 5.6611 24 7 7.6857 9.7122 6.2330 25 14 10.1247 9.0088 5.1207 26 1 10.6537 7.7631 4.5094 27 1 10.1731 10.1089 4.1243 28 1 10.9523 9.3715 6.2992 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.0408 4.2704 1.3159 35 1 2.7796 3.5332 3.3355 36 1 1.2741 1.9560 5.1305 37 1 2.9515 1.3607 5.1320 38 1 3.3781 2.0677 7.4448 39 1 2.9757 3.7192 7.9736 40 1 1.6760 2.5734 7.5673 41 1 4.6943 3.1972 5.0974 42 1 6.5901 4.8944 5.9859 43 1 6.0196 5.4339 4.3884 44 1 8.1080 10.5741 6.3736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285628246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -45.111309 kcal Electronic energy + Delta-G solvation = -26417.362541 eV Core-core repulsion = 22495.823542 eV Total energy + Delta-G solvation = -3921.538999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44979 -40.91380 -39.98581 -37.37175 -35.31719 -34.64146 -34.56003 -32.75674 -31.34419 -31.28831 -29.94812 -27.63811 -27.30040 -24.99762 -24.00722 -22.83307 -21.56516 -21.33753 -20.55017 -19.88007 -19.41668 -17.92057 -17.63181 -17.26590 -16.86652 -16.60128 -16.39003 -16.28487 -15.94983 -15.67863 -15.35327 -15.00827 -14.94125 -14.69621 -14.55451 -14.05525 -13.96521 -13.79287 -13.52081 -13.27943 -13.22302 -13.13270 -12.92919 -12.90607 -12.56182 -12.43933 -12.15776 -12.00107 -11.79679 -11.68491 -11.14761 -10.89729 -10.87133 -10.57935 -10.22990 -10.18578 -10.13558 -9.75393 -8.62865 -8.33663 -6.10001 0.52215 1.09118 1.29271 1.41346 1.48795 1.58961 1.66127 1.77585 2.18331 2.28320 2.37065 2.46406 3.00904 3.34612 3.45123 3.62572 3.72694 4.02101 4.10703 4.15806 4.21125 4.30165 4.37778 4.39118 4.47862 4.55150 4.56995 4.65061 4.70061 4.78312 4.83617 5.05308 5.06491 5.18285 5.28155 5.29247 5.43889 5.44167 5.48085 5.53524 6.21508 6.22452 6.44647 6.52759 6.63342 7.08712 7.28489 7.30296 8.75350 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.002438 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.187889 B =11483.904245 C =13243.964531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C 0.124 3.876 4 N -0.325 5.325 5 N -0.449 5.449 6 H 0.459 0.541 7 C 0.130 3.870 8 C -0.318 4.318 9 C 0.596 3.404 10 O -0.571 6.571 11 N -0.720 5.720 12 C 0.125 3.875 13 C 0.138 3.862 14 H 0.082 0.918 15 C -0.159 4.159 16 N -0.710 5.710 17 C 0.540 3.460 18 O -0.559 6.559 19 C -0.131 4.131 20 S -0.148 6.148 21 C -0.543 4.543 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.995 3.005 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.277 1.277 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.221 0.779 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.414 0.586 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 -18.537 -11.163 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.043 4.043 4 N -0.148 5.148 5 N -0.155 5.155 6 H 0.307 0.693 7 C -0.025 4.025 8 C -0.333 4.333 9 C 0.385 3.615 10 O -0.452 6.452 11 N -0.372 5.372 12 C 0.001 3.999 13 C 0.033 3.967 14 H 0.100 0.900 15 C -0.218 4.218 16 N -0.365 5.365 17 C 0.326 3.674 18 O -0.437 6.437 19 C -0.283 4.283 20 S 0.079 5.921 21 C -0.691 4.691 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.181 1.181 27 H -0.200 1.200 28 H -0.202 1.202 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.237 0.763 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.251 0.749 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.398 -17.869 -11.309 24.513 hybrid contribution 2.408 0.431 -0.305 2.466 sum -9.989 -17.438 -11.614 23.211 Atomic orbital electron populations 1.21556 0.93455 1.02809 1.01165 1.20121 0.96937 0.87819 1.03922 1.22704 0.95041 0.97512 0.89087 1.77126 1.22924 0.91772 1.22946 1.46198 1.50426 1.12798 1.06031 0.69276 1.23713 0.94251 0.98660 0.85844 1.20323 1.22017 0.96851 0.94071 1.17309 0.76127 0.84076 0.83984 1.90729 1.48373 1.21357 1.84707 1.45731 1.68429 1.17378 1.05668 1.21614 1.03125 0.96187 0.78969 1.21190 0.83588 0.96747 0.95173 0.89991 1.22081 1.03948 1.01494 0.94227 1.45878 1.15362 1.12155 1.63090 1.19962 0.88069 0.82020 0.77387 1.90715 1.55321 1.54704 1.42928 1.23394 0.97137 1.01530 1.06214 1.85571 1.17562 1.08165 1.80765 1.23227 0.98544 1.01403 1.45921 0.89995 1.26068 1.03681 0.94679 0.94678 1.70178 1.39052 1.03800 1.41695 0.84963 0.76605 0.78721 0.78027 1.18081 1.19990 1.20239 0.92938 0.90427 0.93691 0.89795 0.89199 0.76259 0.75663 0.89353 0.89932 0.90793 0.93963 0.89512 0.74858 0.87709 0.86794 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.05 -0.91 5.97 29.85 0.18 -0.73 16 3 C 0.12 2.57 6.52 43.52 0.28 2.85 16 4 N -0.33 -6.53 12.63 -46.67 -0.59 -7.12 16 5 N -0.45 -5.90 7.29 -56.31 -0.41 -6.31 16 6 H 0.46 3.01 8.96 -213.43 -1.91 1.10 16 7 C 0.13 1.59 11.52 84.28 0.97 2.57 16 8 C -0.32 -5.87 6.13 -20.15 -0.12 -5.99 16 9 C 0.60 11.89 7.81 86.66 0.68 12.57 16 10 O -0.57 -14.71 14.92 -4.04 -0.06 -14.77 16 11 N -0.72 -10.68 5.38 -466.40 -2.51 -13.18 16 12 C 0.13 1.77 5.23 86.38 0.45 2.22 16 13 C 0.14 2.37 2.73 44.99 0.12 2.49 16 14 H 0.08 1.72 7.58 -2.39 -0.02 1.70 16 15 C -0.16 -2.69 9.48 71.98 0.68 -2.01 16 16 N -0.71 -13.80 4.52 -442.51 -2.00 -15.80 16 17 C 0.54 16.75 7.81 87.66 0.68 17.44 16 18 O -0.56 -22.71 15.53 -3.04 -0.05 -22.75 16 19 C -0.13 -4.58 6.16 71.24 0.44 -4.15 16 20 S -0.15 -7.67 20.57 -56.49 -1.16 -8.83 16 21 C -0.54 -29.51 9.50 67.95 0.65 -28.86 16 22 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -54.20 13.22 21.65 0.29 -53.91 16 25 Si 0.99 42.13 29.55 68.60 2.03 44.15 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.87 6.55 -2.39 -0.02 1.86 16 34 H 0.22 1.03 7.46 -2.91 -0.02 1.01 16 35 H 0.41 4.94 7.06 -92.71 -0.65 4.29 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.41 5.84 8.60 -92.71 -0.80 5.04 16 42 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.11 3.40 8.14 -2.40 -0.02 3.38 16 44 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -81.11 391.07 -0.58 -81.69 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -2.31 Total: 18.70 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 6.19 Total: -1.88 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -5.22 Total: -96.32 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.11 Total: -37.52 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.16 Total: -8.83 kcal Total: -81.11 -0.58 -81.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285628246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.577 kcal (2) G-P(sol) polarization free energy of solvation -81.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds