Wall clock time and date at job start Sat Apr 11 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47489 * 2 1 4 4 N 1.30450 * 125.98905 * 269.99883 * 3 2 1 5 5 N 1.39924 * 108.89917 * 179.97438 * 4 3 2 6 6 H 0.97004 * 125.75483 * 180.02562 * 5 4 3 7 7 C 1.34259 * 108.49566 * 359.75112 * 5 4 3 8 8 C 1.38043 * 107.41253 * 0.39589 * 7 5 4 9 9 C 1.47428 * 126.41666 * 179.87323 * 8 7 5 10 10 O 1.21603 * 120.00320 * 179.68558 * 9 8 7 11 11 N 1.34781 * 119.99797 * 359.68301 * 9 8 7 12 12 C 1.46500 * 119.99732 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47381 * 35.00069 * 12 11 9 14 14 C 1.53006 * 109.47249 * 274.99921 * 12 11 9 15 15 C 1.52999 * 109.46944 * 155.00564 * 12 11 9 16 16 N 1.46504 * 109.46822 * 304.99407 * 15 12 11 17 17 C 1.34773 * 119.99935 * 179.97438 * 16 15 12 18 18 O 1.21281 * 120.00498 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00130 * 179.97438 * 17 16 15 20 20 S 1.80994 * 109.47404 * 180.02562 * 19 17 16 21 21 C 1.76193 * 100.00144 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00034 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00128 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99691 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00158 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47151 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47301 * 119.99871 * 25 23 21 28 28 H 1.48497 * 109.47349 * 240.00074 * 25 23 21 29 29 H 1.09002 * 109.46852 * 300.00219 * 1 2 3 30 30 H 1.08998 * 109.46638 * 59.99962 * 1 2 3 31 31 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46919 * 239.99232 * 2 1 3 33 33 H 1.08999 * 109.47140 * 120.00181 * 2 1 3 34 34 H 1.07998 * 126.29759 * 180.24596 * 7 5 4 35 35 H 0.96998 * 119.99903 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 37 37 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 39 39 H 1.08994 * 109.47465 * 64.99757 * 15 12 11 40 40 H 1.08998 * 109.47565 * 185.00189 * 15 12 11 41 41 H 0.96995 * 120.00028 * 0.02562 * 16 15 12 42 42 H 1.08994 * 109.47356 * 300.00782 * 19 17 16 43 43 H 1.09009 * 109.46639 * 60.00595 * 19 17 16 44 44 H 0.97007 * 119.99478 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2880 2.1434 -1.0555 5 7 2.7334 3.4046 -0.6443 6 1 2.9907 4.1336 -1.2302 7 6 2.7388 3.4376 0.6979 8 6 2.3087 2.2038 1.1432 9 6 2.1595 1.7838 2.5485 10 8 1.7634 0.6641 2.8097 11 7 2.4620 2.6409 3.5437 12 6 2.3142 2.2233 4.9401 13 1 2.5662 1.1668 5.0321 14 6 0.8679 2.4436 5.3880 15 6 3.2525 3.0501 5.8216 16 7 4.6237 2.9334 5.3190 17 6 5.6273 3.5819 5.9423 18 8 5.3955 4.2618 6.9196 19 6 7.0379 3.4614 5.4257 20 16 8.1480 4.4395 6.4684 21 6 9.6819 4.1268 5.6598 22 1 9.7132 3.4881 4.7895 23 6 10.8502 4.7004 6.1421 24 7 10.8123 5.4777 7.2038 25 14 12.4766 4.3683 5.2854 26 1 12.2504 3.4689 4.1255 27 1 13.0571 5.6502 4.8112 28 1 13.4149 3.7222 6.2378 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.0287 4.2746 1.3156 35 1 2.7776 3.5341 3.3353 36 1 0.1994 1.8547 4.7600 37 1 0.7581 2.1334 6.4271 38 1 0.6160 3.5001 5.2960 39 1 2.9450 4.0955 5.7991 40 1 3.2085 2.6803 6.8460 41 1 4.8091 2.3899 4.5373 42 1 7.3454 2.4160 5.4490 43 1 7.0823 3.8305 4.4010 44 1 11.6289 5.8783 7.5410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285668158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:46 Heat of formation + Delta-G solvation = -16.715459 kcal Electronic energy + Delta-G solvation = -26406.012092 eV Core-core repulsion = 22485.704430 eV Total energy + Delta-G solvation = -3920.307662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83323 -39.88124 -38.97444 -36.46247 -34.55493 -33.66559 -32.46139 -32.00534 -30.65632 -30.06538 -29.34478 -26.04330 -25.41559 -24.37844 -23.85075 -21.77307 -20.59051 -20.38867 -19.88403 -18.87222 -17.87096 -16.94666 -16.60161 -16.28919 -15.74906 -15.62673 -15.14398 -14.99988 -14.83558 -14.60457 -14.33182 -14.20854 -14.04938 -13.49194 -13.32422 -13.10402 -12.92351 -12.83829 -12.63253 -12.57281 -12.21973 -11.84351 -11.78560 -11.48640 -11.28684 -11.09956 -11.09228 -11.05339 -10.78555 -10.07186 -9.93333 -9.84315 -9.53182 -9.42566 -9.15037 -9.11348 -8.98386 -8.27378 -6.53909 -6.25293 -3.95911 1.09248 1.80457 2.27631 2.85076 2.99816 3.05185 3.16715 3.18974 3.26047 3.30560 3.67274 4.06207 4.17069 4.21342 4.38370 4.71820 4.84309 4.85741 4.97430 5.00097 5.10130 5.10996 5.14121 5.19438 5.33901 5.34325 5.42532 5.50557 5.67715 5.71369 5.75655 5.83926 5.86578 5.92399 5.95001 6.09555 6.13039 6.21057 6.51581 6.66041 7.09321 7.28625 7.56589 7.62015 8.02262 8.32064 8.53737 9.20394 10.82128 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002353 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.564258 B =11897.962711 C =13439.382829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.140 3.860 4 N -0.298 5.298 5 N -0.459 5.459 6 H 0.445 0.555 7 C 0.108 3.892 8 C -0.289 4.289 9 C 0.597 3.403 10 O -0.536 6.536 11 N -0.727 5.727 12 C 0.134 3.866 13 H 0.097 0.903 14 C -0.160 4.160 15 C 0.113 3.887 16 N -0.740 5.740 17 C 0.532 3.468 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.186 0.814 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.807 -6.043 -14.223 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.029 4.029 4 N -0.120 5.120 5 N -0.163 5.163 6 H 0.290 0.710 7 C -0.045 4.045 8 C -0.305 4.305 9 C 0.385 3.615 10 O -0.414 6.414 11 N -0.379 5.379 12 C 0.029 3.971 13 H 0.115 0.885 14 C -0.219 4.219 15 C -0.012 4.012 16 N -0.395 5.395 17 C 0.318 3.682 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.203 0.797 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.366 -5.575 -13.526 26.726 hybrid contribution 1.826 -0.122 -1.563 2.407 sum -20.540 -5.697 -15.089 26.115 Atomic orbital electron populations 1.21613 0.93945 1.02144 1.01907 1.20141 0.96516 0.87990 1.04283 1.22497 0.94772 0.96977 0.88615 1.77203 1.21718 0.90641 1.22465 1.46145 1.51277 1.13364 1.05515 0.70995 1.23212 0.96678 0.98807 0.85836 1.20271 1.20143 0.95486 0.94554 1.17217 0.76495 0.84407 0.83426 1.90756 1.46466 1.20003 1.84156 1.45962 1.69067 1.17128 1.05770 1.21228 0.95475 1.00506 0.79850 0.88460 1.22105 0.95252 1.02426 1.02114 1.21624 0.81028 1.00494 0.98050 1.46006 1.06922 1.52855 1.33709 1.20318 0.86307 0.78501 0.83080 1.90712 1.84072 1.38730 1.25509 1.23530 0.95328 1.06223 1.05338 1.85392 0.99144 1.60977 1.37817 1.22902 0.93036 1.35522 1.16867 0.90900 1.24999 0.99042 0.94533 0.95049 1.70030 1.28691 1.29711 1.21819 0.86114 0.81913 0.78206 0.79256 1.19626 1.20579 1.20527 0.92231 0.93007 0.91829 0.90555 0.87972 0.79664 0.76704 0.91493 0.91107 0.92131 0.90972 0.89937 0.76668 0.89210 0.89340 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.90 37.16 0.37 -0.75 16 2 C -0.05 -0.45 5.97 -27.88 -0.17 -0.62 16 3 C 0.14 1.40 6.52 -82.02 -0.53 0.87 16 4 N -0.30 -2.95 12.63 33.89 0.43 -2.52 16 5 N -0.46 -2.99 7.29 30.85 0.22 -2.77 16 6 H 0.45 1.45 8.96 -182.73 -1.64 -0.19 16 7 C 0.11 0.65 11.52 -16.56 -0.19 0.46 16 8 C -0.29 -2.60 6.13 -105.07 -0.64 -3.24 16 9 C 0.60 5.80 7.78 -12.52 -0.10 5.71 16 10 O -0.54 -6.72 14.58 5.27 0.08 -6.65 16 11 N -0.73 -5.42 4.51 -54.88 -0.25 -5.67 16 12 C 0.13 1.09 2.73 -67.93 -0.19 0.90 16 13 H 0.10 0.92 7.58 -51.93 -0.39 0.53 16 14 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 15 C 0.11 1.11 5.23 -4.04 -0.02 1.09 16 16 N -0.74 -8.82 5.39 -60.29 -0.32 -9.15 16 17 C 0.53 9.26 7.85 -10.98 -0.09 9.17 16 18 O -0.52 -11.08 15.86 5.56 0.09 -10.99 16 19 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 22 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 25 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.03 6.55 -51.93 -0.34 0.69 16 34 H 0.19 0.42 7.46 -52.49 -0.39 0.03 16 35 H 0.40 2.24 7.52 -40.82 -0.31 1.94 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.40 4.02 8.14 -40.82 -0.33 3.69 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -37.29 391.07 -8.75 -46.04 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.60 Total: 1.25 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.79 Total: -2.69 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.81 Total: -45.19 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.29 -8.75 -46.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285668158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.323 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds