Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38033 * 126.29276 * 270.00087 * 3 2 1 5 5 C 1.47436 * 126.41612 * 0.02562 * 4 3 2 6 6 O 1.21597 * 119.99817 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99738 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99312 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46873 * 179.97438 * 8 7 5 10 10 N 1.46501 * 109.47147 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99587 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00456 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99557 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47123 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00145 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00486 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99607 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00398 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47099 * 119.99660 * 19 17 15 22 22 H 1.48498 * 109.47148 * 239.99472 * 19 17 15 23 23 C 1.41292 * 107.17088 * 180.02562 * 4 3 2 24 24 N 1.30440 * 108.02180 * 359.97438 * 23 4 3 25 25 N 1.34258 * 126.28792 * 89.69149 * 3 2 1 26 26 C 1.46496 * 125.75668 * 359.97417 * 25 3 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 0.96995 * 120.00557 * 0.02562 * 7 5 4 33 33 H 1.08991 * 109.47514 * 299.99919 * 8 7 5 34 34 H 1.09004 * 109.47166 * 60.00510 * 8 7 5 35 35 H 1.09005 * 109.47076 * 300.00311 * 9 8 7 36 36 H 1.09000 * 109.47089 * 59.99688 * 9 8 7 37 37 H 0.96995 * 119.99856 * 359.97438 * 10 9 8 38 38 H 1.08991 * 109.47477 * 300.00068 * 13 11 10 39 39 H 1.09000 * 109.46809 * 60.00019 * 13 11 10 40 40 H 0.96997 * 120.00162 * 180.02562 * 18 17 15 41 41 H 1.08002 * 125.98869 * 179.97438 * 23 4 3 42 42 H 1.09000 * 109.47013 * 90.00124 * 26 25 3 43 43 H 1.09001 * 109.47343 * 209.99951 * 26 25 3 44 44 H 1.09003 * 109.47556 * 330.00045 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1911 -1.1126 5 6 2.1581 1.7782 -2.5203 6 8 1.7626 0.6598 -2.7878 7 7 2.4634 2.6399 -3.5106 8 6 2.3182 2.2292 -4.9094 9 6 2.7268 3.3848 -5.8251 10 7 2.5811 2.9744 -7.2239 11 6 2.8863 3.8362 -8.2142 12 8 3.2811 4.9515 -7.9475 13 6 2.7369 3.4138 -9.6532 14 16 3.2202 4.7809 -10.7365 15 6 2.9550 4.0332 -12.3097 16 1 2.5956 3.0165 -12.3707 17 6 3.2088 4.7502 -13.4707 18 7 3.6472 5.9891 -13.3964 19 14 2.9283 3.9572 -15.1385 20 1 2.4374 2.5684 -14.9501 21 1 1.9193 4.7407 -15.8958 22 1 4.2054 3.9319 -15.8957 23 6 2.7503 3.4495 -0.6497 24 7 2.7417 3.4260 0.6545 25 7 2.2917 2.1719 1.0822 26 6 2.1336 1.7488 2.4758 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7799 3.5316 -3.2972 33 1 2.9573 1.3679 -5.1035 34 1 1.2794 1.9621 -5.1037 35 1 2.0873 4.2459 -5.6309 36 1 3.7654 3.6525 -5.6309 37 1 2.2657 2.0823 -7.4373 38 1 3.3760 2.5526 -9.8473 39 1 1.6982 3.1465 -9.8474 40 1 3.8242 6.4904 -14.2077 41 1 3.0461 4.2846 -1.2675 42 1 3.0631 1.3010 2.8272 43 1 1.8911 2.6139 3.0929 44 1 1.3289 1.0167 2.5442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292519965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -7.628319 kcal Electronic energy + Delta-G solvation = -25401.648551 eV Core-core repulsion = 21481.734937 eV Total energy + Delta-G solvation = -3919.913614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95806 -39.61209 -39.04082 -35.95275 -34.85943 -33.82890 -33.43214 -32.42806 -30.52497 -29.67551 -28.32241 -27.13788 -25.48235 -24.41855 -23.22274 -22.47865 -21.03025 -20.31359 -19.98840 -18.11831 -17.77797 -16.56333 -16.43968 -16.23412 -15.95630 -15.83799 -15.45313 -15.01862 -14.96408 -14.80206 -14.71198 -14.07312 -13.98937 -13.80171 -13.74777 -13.27980 -13.19449 -13.15637 -12.74419 -12.56567 -12.34975 -12.15789 -11.96814 -11.69484 -11.63359 -11.13968 -11.06652 -11.01901 -10.75831 -10.16455 -9.90325 -9.80870 -9.47182 -9.44303 -9.08170 -9.00604 -8.96149 -8.23796 -6.50256 -6.21806 -3.92370 1.07910 1.75968 1.83307 2.67762 3.05558 3.15562 3.16866 3.22105 3.30119 3.37983 3.78586 3.95248 3.98767 4.20398 4.35711 4.44776 4.53504 4.58222 4.72328 4.80059 4.83459 4.87335 4.93368 5.11067 5.13681 5.14114 5.19030 5.26515 5.43158 5.59058 5.67649 5.68269 5.76226 5.80384 5.89020 5.94540 6.11310 6.14136 6.34427 6.51973 7.06529 7.24617 7.60083 7.63532 8.00085 8.35649 8.55666 9.23861 10.85722 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.001494 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.602329 B =18737.425234 C =19411.976706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C 0.163 3.837 4 C -0.298 4.298 5 C 0.599 3.401 6 O -0.545 6.545 7 N -0.724 5.724 8 C 0.113 3.887 9 C 0.110 3.890 10 N -0.736 5.736 11 C 0.534 3.466 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.084 3.916 24 N -0.297 5.297 25 N -0.362 5.362 26 C 0.094 3.906 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.402 0.598 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.401 0.599 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 41 H 0.191 0.809 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -12.516 32.435 35.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C 0.030 3.970 4 C -0.313 4.313 5 C 0.387 3.613 6 O -0.424 6.424 7 N -0.376 5.376 8 C -0.012 4.012 9 C -0.015 4.015 10 N -0.392 5.392 11 C 0.320 3.680 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.104 4.104 24 N -0.116 5.116 25 N -0.141 5.141 26 C -0.047 4.047 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.236 0.764 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.208 0.792 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.280 -10.636 33.826 35.716 hybrid contribution -0.683 -2.035 -2.020 2.948 sum -4.963 -12.671 31.806 34.595 Atomic orbital electron populations 1.21647 0.93278 1.02675 1.02274 1.20480 0.97176 0.88286 1.04985 1.21564 0.94382 0.94767 0.86240 1.19921 1.21582 0.96467 0.93360 1.17118 0.76446 0.84171 0.83554 1.90743 1.47172 1.20238 1.84226 1.45521 1.69100 1.17427 1.05567 1.21422 1.02559 0.97321 0.79853 1.21330 1.02348 0.96661 0.81139 1.45800 1.70689 1.17746 1.04965 1.20319 0.76207 0.84644 0.86810 1.90708 1.43976 1.20180 1.84133 1.23529 1.05334 1.06942 0.94588 1.85395 1.86386 1.14072 0.97552 1.22913 1.51759 1.02223 0.91453 0.90822 1.24991 0.94552 0.94816 0.99220 1.70026 1.42202 1.08973 1.29097 0.86111 0.78056 0.79200 0.82095 1.19600 1.20570 1.20576 1.24065 0.97032 0.97196 0.92059 1.77219 1.21717 0.99327 1.13313 1.48375 1.49513 1.09789 1.06433 1.21998 1.03362 1.02040 0.77275 0.93224 0.91556 0.91313 0.86900 0.90694 0.76355 0.90622 0.90627 0.90922 0.90919 0.76483 0.89066 0.89067 0.92233 0.79197 0.90150 0.88673 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.07 -0.45 5.39 -27.88 -0.15 -0.60 16 3 C 0.16 1.34 6.26 -81.61 -0.51 0.83 16 4 C -0.30 -2.73 6.13 -105.07 -0.64 -3.38 16 5 C 0.60 6.09 7.81 -12.52 -0.10 5.99 16 6 O -0.55 -6.92 14.84 5.28 0.08 -6.84 16 7 N -0.72 -5.92 5.55 -61.38 -0.34 -6.26 16 8 C 0.11 0.97 5.79 -4.04 -0.02 0.95 16 9 C 0.11 1.14 5.79 -4.04 -0.02 1.11 16 10 N -0.74 -9.19 5.56 -60.29 -0.33 -9.53 16 11 C 0.53 9.63 7.85 -10.98 -0.09 9.54 16 12 O -0.52 -11.39 15.86 5.56 0.09 -11.30 16 13 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 14 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 15 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 19 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.08 0.68 11.50 -16.98 -0.20 0.49 16 24 N -0.30 -2.77 12.50 30.86 0.39 -2.38 16 25 N -0.36 -2.74 3.98 -63.34 -0.25 -2.99 16 26 C 0.09 0.31 11.06 59.84 0.66 0.97 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.11 0.92 6.50 -51.93 -0.34 0.58 16 31 H 0.07 0.29 7.71 -51.93 -0.40 -0.11 16 32 H 0.40 2.39 7.43 -40.82 -0.30 2.09 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.19 0.92 7.50 -52.49 -0.39 0.52 16 42 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.12 7.63 -51.93 -0.40 -0.28 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -38.48 392.49 -7.62 -46.09 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.37 Total: 0.38 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.28 Total: -0.22 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.19 Total: -46.51 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.48 -7.62 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292519965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.463 kcal (2) G-P(sol) polarization free energy of solvation -38.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds