Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38033 * 126.29276 * 270.00087 * 3 2 1 5 5 C 1.47436 * 126.41612 * 0.02562 * 4 3 2 6 6 O 1.21597 * 119.99817 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99738 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99312 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46873 * 179.97438 * 8 7 5 10 10 N 1.46501 * 109.47147 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99587 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00456 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99557 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47123 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00145 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00486 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99607 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00398 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47099 * 119.99660 * 19 17 15 22 22 H 1.48498 * 109.47148 * 239.99472 * 19 17 15 23 23 C 1.41292 * 107.17088 * 180.02562 * 4 3 2 24 24 N 1.30440 * 108.02180 * 359.97438 * 23 4 3 25 25 N 1.34258 * 126.28792 * 89.69149 * 3 2 1 26 26 C 1.46496 * 125.75668 * 359.97417 * 25 3 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 0.96995 * 120.00557 * 0.02562 * 7 5 4 33 33 H 1.08991 * 109.47514 * 299.99919 * 8 7 5 34 34 H 1.09004 * 109.47166 * 60.00510 * 8 7 5 35 35 H 1.09005 * 109.47076 * 300.00311 * 9 8 7 36 36 H 1.09000 * 109.47089 * 59.99688 * 9 8 7 37 37 H 0.96995 * 119.99856 * 359.97438 * 10 9 8 38 38 H 1.08991 * 109.47477 * 300.00068 * 13 11 10 39 39 H 1.09000 * 109.46809 * 60.00019 * 13 11 10 40 40 H 0.96997 * 120.00162 * 180.02562 * 18 17 15 41 41 H 1.08002 * 125.98869 * 179.97438 * 23 4 3 42 42 H 1.09000 * 109.47013 * 90.00124 * 26 25 3 43 43 H 1.09001 * 109.47343 * 209.99951 * 26 25 3 44 44 H 1.09003 * 109.47556 * 330.00045 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1911 -1.1126 5 6 2.1581 1.7782 -2.5203 6 8 1.7626 0.6598 -2.7878 7 7 2.4634 2.6399 -3.5106 8 6 2.3182 2.2292 -4.9094 9 6 2.7268 3.3848 -5.8251 10 7 2.5811 2.9744 -7.2239 11 6 2.8863 3.8362 -8.2142 12 8 3.2811 4.9515 -7.9475 13 6 2.7369 3.4138 -9.6532 14 16 3.2202 4.7809 -10.7365 15 6 2.9550 4.0332 -12.3097 16 1 2.5956 3.0165 -12.3707 17 6 3.2088 4.7502 -13.4707 18 7 3.6472 5.9891 -13.3964 19 14 2.9283 3.9572 -15.1385 20 1 2.4374 2.5684 -14.9501 21 1 1.9193 4.7407 -15.8958 22 1 4.2054 3.9319 -15.8957 23 6 2.7503 3.4495 -0.6497 24 7 2.7417 3.4260 0.6545 25 7 2.2917 2.1719 1.0822 26 6 2.1336 1.7488 2.4758 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7799 3.5316 -3.2972 33 1 2.9573 1.3679 -5.1035 34 1 1.2794 1.9621 -5.1037 35 1 2.0873 4.2459 -5.6309 36 1 3.7654 3.6525 -5.6309 37 1 2.2657 2.0823 -7.4373 38 1 3.3760 2.5526 -9.8473 39 1 1.6982 3.1465 -9.8474 40 1 3.8242 6.4904 -14.2077 41 1 3.0461 4.2846 -1.2675 42 1 3.0631 1.3010 2.8272 43 1 1.8911 2.6139 3.0929 44 1 1.3289 1.0167 2.5442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292519965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -37.282209 kcal Electronic energy + Delta-G solvation = -25402.934440 eV Core-core repulsion = 21481.734937 eV Total energy + Delta-G solvation = -3921.199503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.53843 -40.70709 -40.10224 -36.92026 -35.48761 -34.78577 -34.56751 -33.93097 -31.70007 -30.46328 -29.24571 -27.81661 -27.55089 -24.98373 -23.98087 -23.18824 -21.97766 -21.32220 -20.62606 -19.83840 -18.68437 -17.88541 -17.21034 -17.07233 -16.86759 -16.76803 -16.69224 -16.50815 -16.06308 -15.68380 -15.54393 -15.20581 -14.99855 -14.72356 -14.56904 -14.37025 -14.25345 -13.74703 -13.58547 -13.48326 -13.22802 -13.14310 -12.91751 -12.84329 -12.78003 -12.64141 -12.56430 -12.18975 -11.70203 -11.68717 -11.14504 -11.07838 -10.87179 -10.43921 -10.25539 -10.23358 -10.11773 -9.61180 -8.64658 -8.33576 -6.11111 0.47136 1.13001 1.25916 1.37571 1.42569 1.48026 1.58712 1.61410 1.98103 2.28562 2.43946 2.64693 3.00908 3.34071 3.47278 3.49849 3.66967 3.90759 4.02905 4.03289 4.06296 4.26763 4.30244 4.33803 4.38803 4.42188 4.46788 4.54948 4.63645 4.65958 4.69603 4.87017 4.91909 4.99084 5.17745 5.28127 5.33262 5.38872 5.44056 5.46753 5.86286 6.21629 6.44544 6.48492 6.60681 7.08266 7.22445 7.27512 8.75881 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.001494 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.602329 B =18737.425234 C =19411.976706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C 0.160 3.840 4 C -0.323 4.323 5 C 0.598 3.402 6 O -0.576 6.576 7 N -0.716 5.716 8 C 0.125 3.875 9 C 0.115 3.885 10 N -0.711 5.711 11 C 0.537 3.463 12 O -0.563 6.563 13 C -0.131 4.131 14 S -0.151 6.151 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.085 3.915 24 N -0.326 5.326 25 N -0.361 5.361 26 C 0.082 3.918 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.413 0.587 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.419 0.581 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.215 0.785 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 -14.644 33.471 36.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C 0.026 3.974 4 C -0.337 4.337 5 C 0.387 3.613 6 O -0.456 6.456 7 N -0.369 5.369 8 C 0.000 4.000 9 C -0.010 4.010 10 N -0.366 5.366 11 C 0.323 3.677 12 O -0.441 6.441 13 C -0.282 4.282 14 S 0.076 5.924 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.102 4.102 24 N -0.145 5.145 25 N -0.139 5.139 26 C -0.057 4.057 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.250 0.750 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.256 0.744 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.231 0.769 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.031 -12.791 34.915 37.523 hybrid contribution -0.473 -1.435 -2.158 2.634 sum -5.504 -14.226 32.757 36.134 Atomic orbital electron populations 1.21607 0.92848 1.03323 1.01612 1.20494 0.97414 0.87301 1.05372 1.21886 0.93755 0.95434 0.86363 1.20011 1.23191 0.97395 0.93141 1.17295 0.75969 0.83860 0.84188 1.90724 1.48744 1.21483 1.84698 1.45424 1.68562 1.17799 1.05074 1.21254 1.02616 0.96408 0.79702 1.21387 1.02472 0.97326 0.79778 1.45501 1.68539 1.17600 1.04959 1.20005 0.76212 0.84524 0.86982 1.90699 1.46540 1.22236 1.84589 1.23378 1.06640 1.04068 0.94108 1.85555 1.87342 1.19438 1.00051 1.23252 1.51683 1.02611 0.91853 0.89870 1.26107 0.93950 0.95292 1.03739 1.70185 1.43444 1.10763 1.30391 0.84911 0.78112 0.78667 0.76292 1.18044 1.19978 1.19991 1.24461 0.96221 0.97527 0.92003 1.77164 1.22827 1.00653 1.13900 1.48694 1.48513 1.09096 1.07625 1.22381 1.05041 1.02976 0.75308 0.91886 0.94131 0.90018 0.88878 0.87867 0.75039 0.90429 0.90456 0.90929 0.90915 0.74414 0.87046 0.87050 0.92013 0.76891 0.88759 0.88141 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 71.98 0.71 -0.70 16 2 C -0.07 -0.77 5.39 29.85 0.16 -0.61 16 3 C 0.16 2.47 6.26 42.14 0.26 2.74 16 4 C -0.32 -5.73 6.13 -20.15 -0.12 -5.85 16 5 C 0.60 11.86 7.81 86.67 0.68 12.54 16 6 O -0.58 -14.52 14.84 -4.02 -0.06 -14.58 16 7 N -0.72 -10.91 5.55 -466.36 -2.59 -13.50 16 8 C 0.12 1.95 5.79 86.38 0.50 2.45 16 9 C 0.11 2.18 5.79 86.38 0.50 2.68 16 10 N -0.71 -16.37 5.56 -463.04 -2.57 -18.94 16 11 C 0.54 18.87 7.85 87.66 0.69 19.56 16 12 O -0.56 -25.03 15.86 -3.03 -0.05 -25.08 16 13 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 14 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 15 C -0.55 -30.99 9.50 67.95 0.65 -30.35 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.78 5.49 84.86 0.47 1.25 16 18 N -0.91 -55.79 13.22 21.65 0.29 -55.50 16 19 Si 1.00 43.48 29.55 68.60 2.03 45.50 16 20 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.09 1.31 11.50 85.65 0.99 2.30 16 24 N -0.33 -5.80 12.50 -56.28 -0.70 -6.51 16 25 N -0.36 -4.98 3.98 -354.32 -1.41 -6.39 16 26 C 0.08 0.37 11.06 127.77 1.41 1.79 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.50 6.50 -2.39 -0.02 1.48 16 31 H 0.10 0.56 7.71 -2.39 -0.02 0.54 16 32 H 0.41 4.39 7.43 -92.71 -0.69 3.70 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.42 6.90 8.47 -92.71 -0.79 6.11 16 38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.21 1.82 7.50 -2.91 -0.02 1.79 16 42 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.11 -0.03 7.63 -2.39 -0.02 -0.05 16 Total: -1.00 -85.79 392.49 0.66 -85.12 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.43 Total: 16.09 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 7.33 Total: 3.22 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -6.99 Total: -100.83 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.11 Total: -39.65 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -85.79 0.66 -85.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292519965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.841 kcal (2) G-P(sol) polarization free energy of solvation -85.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds