Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29418 * 125.69148 * 2 1 4 4 N 1.26395 * 116.47364 * 179.97438 * 3 2 1 5 5 C 1.29419 * 116.47526 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.69932 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.47039 * 90.02406 * 6 5 4 8 8 C 1.42904 * 114.00336 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47443 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99569 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99902 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99680 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.50295 * 35.06621 * 12 11 9 14 14 C 1.53048 * 109.49689 * 155.16329 * 12 11 9 15 15 C 1.53043 * 109.53787 * 181.31472 * 14 12 11 16 16 C 1.53180 * 109.31183 * 298.63478 * 15 14 12 17 17 N 1.46925 * 108.78097 * 54.63744 * 16 15 14 18 18 C 1.36935 * 120.63401 * 126.40959 * 17 16 15 19 19 H 1.07997 * 119.99938 * 331.81193 * 18 17 16 20 20 C 1.38809 * 119.99861 * 151.81174 * 18 17 16 21 21 N 1.31621 * 120.00355 * 343.08264 * 20 18 17 22 22 Si 1.86801 * 120.00090 * 163.08592 * 20 18 17 23 23 H 1.48508 * 109.47013 * 59.99937 * 22 20 18 24 24 H 1.48495 * 109.47503 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47104 * 300.00157 * 22 20 18 26 26 C 1.46933 * 118.73574 * 306.38988 * 17 16 15 27 27 S 1.71215 * 108.60757 * 0.22996 * 5 4 3 28 28 H 1.08998 * 109.47354 * 90.02578 * 1 2 3 29 29 H 1.09001 * 109.46735 * 210.02958 * 1 2 3 30 30 H 1.09004 * 109.46822 * 330.01907 * 1 2 3 31 31 H 1.09012 * 109.47084 * 330.02870 * 6 5 4 32 32 H 1.08994 * 109.47690 * 210.02318 * 6 5 4 33 33 H 1.08999 * 109.46606 * 300.00188 * 8 7 6 34 34 H 1.08998 * 109.47076 * 59.99536 * 8 7 6 35 35 H 0.96998 * 120.00124 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.45839 * 301.33896 * 14 12 11 37 37 H 1.09001 * 109.45988 * 61.29264 * 14 12 11 38 38 H 1.09000 * 109.49341 * 178.67716 * 15 14 12 39 39 H 1.09000 * 109.49363 * 58.58897 * 15 14 12 40 40 H 1.09001 * 109.59223 * 294.84423 * 16 15 14 41 41 H 1.09005 * 109.70329 * 174.49725 * 16 15 14 42 42 H 0.96996 * 120.00177 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.58929 * 293.82083 * 26 17 16 44 44 H 1.08996 * 109.58604 * 173.39059 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8486 0.0005 5 6 3.8937 -0.3873 0.0015 6 6 5.3233 -0.8640 0.0017 7 8 5.7751 -1.0141 1.3490 8 6 7.1267 -1.4642 1.4621 9 6 7.4955 -1.5859 2.9182 10 8 6.6809 -1.3145 3.7747 11 7 8.7302 -1.9974 3.2686 12 6 9.0884 -2.1162 4.6841 13 1 8.2199 -2.4487 5.2526 14 6 10.2218 -3.1328 4.8405 15 6 10.5746 -3.2820 6.3222 16 6 11.0561 -1.9336 6.8666 17 7 10.0307 -0.9184 6.5898 18 6 9.5298 -0.1394 7.5985 19 1 9.5060 -0.5159 8.6105 20 6 9.0527 1.1341 7.3204 21 7 9.3731 1.7243 6.1884 22 14 7.9559 2.0104 8.5526 23 1 8.6848 2.1728 9.8363 24 1 7.5847 3.3468 8.0223 25 1 6.7268 1.2084 8.7794 26 6 9.5532 -0.7545 5.2099 27 16 2.5062 -1.3904 -0.0047 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5136 31 1 5.9496 -0.1348 -0.5124 32 1 5.3865 -1.8234 -0.5117 33 1 7.2276 -2.4359 0.9789 34 1 7.7901 -0.7472 0.9784 35 1 9.3815 -2.2148 2.5835 36 1 9.9022 -4.0967 4.4444 37 1 11.0978 -2.7873 4.2916 38 1 11.3657 -4.0234 6.4349 39 1 9.6924 -3.6038 6.8756 40 1 11.9888 -1.6537 6.3770 41 1 11.2161 -2.0075 7.9423 42 1 9.0394 2.6140 5.9938 43 1 10.3633 -0.3786 4.5851 44 1 8.7196 -0.0524 5.1927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316944900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = 9.179910 kcal Electronic energy + Delta-G solvation = -26824.046020 eV Core-core repulsion = 22904.861265 eV Total energy + Delta-G solvation = -3919.184755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54861 -39.62755 -38.07634 -37.01508 -34.10546 -33.68865 -32.66584 -30.89836 -30.05867 -29.40483 -27.57891 -26.40891 -25.23949 -24.53493 -22.26632 -21.90257 -20.35035 -20.02017 -19.63125 -19.30868 -17.28094 -17.03806 -16.73285 -16.31473 -15.91597 -15.64319 -15.22051 -14.87312 -14.35103 -14.20882 -13.99904 -13.60073 -13.59066 -13.46037 -13.33174 -13.02790 -12.86956 -12.51348 -12.31225 -12.21477 -12.10869 -11.87770 -10.98567 -10.74722 -10.74440 -10.66141 -10.52047 -10.47965 -10.23635 -10.08355 -10.02142 -9.97098 -9.91455 -9.90998 -9.51309 -9.32372 -8.55505 -8.38819 -6.62299 -5.71746 -3.15683 0.05417 0.58372 1.04767 2.20372 2.93367 3.00080 3.46658 3.54085 3.55713 3.59614 4.00520 4.29634 4.46073 4.58401 4.66655 4.87181 4.95238 4.95926 5.00496 5.09907 5.16675 5.23224 5.35980 5.42015 5.46032 5.55559 5.64305 5.69305 6.08115 6.13734 6.33519 6.41799 6.49278 6.65063 6.70429 6.78072 6.93218 6.97410 7.31514 7.75117 7.85025 7.91322 8.28536 8.51764 8.63257 9.26683 9.90617 10.45176 11.36286 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.002597 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.317729 B =10780.139997 C =12363.867157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.019 4.019 3 N -0.261 5.261 4 N -0.235 5.235 5 C -0.019 4.019 6 C 0.143 3.857 7 O -0.352 6.352 8 C 0.046 3.954 9 C 0.509 3.491 10 O -0.509 6.509 11 N -0.719 5.719 12 C 0.118 3.882 13 H 0.082 0.918 14 C -0.115 4.115 15 C -0.131 4.131 16 C 0.142 3.858 17 N -0.588 5.588 18 C -0.259 4.259 19 H 0.066 0.934 20 C 0.008 3.992 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.166 3.834 27 S 0.191 5.809 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.392 0.608 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.255 0.745 43 H 0.017 0.983 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.574 -12.612 -18.576 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.297 4.297 3 N -0.100 5.100 4 N -0.075 5.075 5 C -0.298 4.298 6 C 0.062 3.938 7 O -0.270 6.270 8 C -0.034 4.034 9 C 0.292 3.708 10 O -0.382 6.382 11 N -0.372 5.372 12 C 0.013 3.987 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.171 4.171 16 C 0.016 3.984 17 N -0.311 5.311 18 C -0.388 4.388 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.542 5.542 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.039 3.961 27 S 0.435 5.565 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.225 0.775 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.285 -11.828 -17.808 23.724 hybrid contribution 0.026 0.503 -0.015 0.504 sum -10.259 -11.325 -17.823 23.477 Atomic orbital electron populations 1.20414 0.83740 1.05011 1.04349 1.29351 1.04526 0.91996 1.03780 1.71500 0.96782 1.26730 1.14989 1.71432 1.06527 1.17041 1.12474 1.28683 1.02190 0.92726 1.06166 1.20659 0.86621 1.00654 0.85868 1.88110 1.27395 1.88052 1.23419 1.22310 0.84415 1.00484 0.96211 1.19979 0.82750 0.78222 0.89827 1.90794 1.49320 1.46724 1.51410 1.45942 1.13014 1.68886 1.09350 1.21998 0.97625 0.99803 0.79231 0.89988 1.21671 0.98021 0.97705 0.97901 1.22005 1.00697 0.99412 0.94994 1.20953 0.91244 0.87930 0.98294 1.43948 1.42205 1.40102 1.04828 1.19083 1.36216 0.94053 0.89493 0.91670 1.25042 1.00786 0.95912 0.97425 1.69987 1.45340 1.14093 1.24807 0.86373 0.81155 0.78731 0.80533 1.20905 1.21573 1.20848 1.21103 0.98952 0.91679 0.84391 1.83613 0.97353 1.11403 1.64170 0.89005 0.89518 0.88600 0.89269 0.90332 0.90180 0.89727 0.77471 0.93103 0.92216 0.92608 0.92112 0.96438 0.92618 0.93544 0.96451 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.49 36.01 0.38 -0.06 16 2 C -0.02 -0.19 7.53 -13.29 -0.10 -0.29 16 3 N -0.26 -3.74 11.66 32.58 0.38 -3.36 16 4 N -0.24 -3.62 11.66 32.58 0.38 -3.24 16 5 C -0.02 -0.23 7.16 -13.30 -0.10 -0.33 16 6 C 0.14 1.47 6.53 36.01 0.24 1.70 16 7 O -0.35 -5.16 9.86 -55.14 -0.54 -5.70 16 8 C 0.05 0.55 6.42 36.01 0.23 0.78 16 9 C 0.51 8.86 7.87 -10.99 -0.09 8.77 16 10 O -0.51 -11.99 16.16 -14.35 -0.23 -12.23 16 11 N -0.72 -11.23 5.08 -53.69 -0.27 -11.50 16 12 C 0.12 2.29 2.60 -67.81 -0.18 2.12 16 13 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 14 C -0.11 -1.80 5.35 -26.68 -0.14 -1.94 16 15 C -0.13 -2.20 6.08 -26.62 -0.16 -2.37 16 16 C 0.14 2.96 6.51 -3.72 -0.02 2.94 16 17 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16 18 C -0.26 -7.41 9.58 -15.06 -0.14 -7.56 16 19 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 20 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 21 N -0.90 -27.47 11.20 55.49 0.62 -26.85 16 22 Si 0.90 23.22 29.59 -169.99 -5.03 18.19 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.17 4.09 4.88 -3.71 -0.02 4.07 16 27 S 0.19 1.76 23.04 -107.50 -2.48 -0.72 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.39 4.42 8.60 -40.82 -0.35 4.07 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 42 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 2.78 6.06 -51.93 -0.31 2.46 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -39.26 380.70 -8.66 -47.92 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.52 Total: -0.56 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.19 Total: 7.97 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.59 Total: -60.61 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.78 Total: -17.93 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.03 Total: 18.19 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.48 Total: -0.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.26 -8.66 -47.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316944900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.101 kcal (2) G-P(sol) polarization free energy of solvation -39.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds