Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29418 * 125.69148 * 2 1 4 4 N 1.26395 * 116.47364 * 179.97438 * 3 2 1 5 5 C 1.29419 * 116.47526 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.69932 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.47039 * 90.02406 * 6 5 4 8 8 C 1.42904 * 114.00336 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47443 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99569 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99902 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99680 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.50295 * 35.06621 * 12 11 9 14 14 C 1.53048 * 109.49689 * 155.16329 * 12 11 9 15 15 C 1.53043 * 109.53787 * 181.31472 * 14 12 11 16 16 C 1.53180 * 109.31183 * 298.63478 * 15 14 12 17 17 N 1.46925 * 108.78097 * 54.63744 * 16 15 14 18 18 C 1.36935 * 120.63401 * 126.40959 * 17 16 15 19 19 H 1.07997 * 119.99938 * 331.81193 * 18 17 16 20 20 C 1.38809 * 119.99861 * 151.81174 * 18 17 16 21 21 N 1.31621 * 120.00355 * 343.08264 * 20 18 17 22 22 Si 1.86801 * 120.00090 * 163.08592 * 20 18 17 23 23 H 1.48508 * 109.47013 * 59.99937 * 22 20 18 24 24 H 1.48495 * 109.47503 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47104 * 300.00157 * 22 20 18 26 26 C 1.46933 * 118.73574 * 306.38988 * 17 16 15 27 27 S 1.71215 * 108.60757 * 0.22996 * 5 4 3 28 28 H 1.08998 * 109.47354 * 90.02578 * 1 2 3 29 29 H 1.09001 * 109.46735 * 210.02958 * 1 2 3 30 30 H 1.09004 * 109.46822 * 330.01907 * 1 2 3 31 31 H 1.09012 * 109.47084 * 330.02870 * 6 5 4 32 32 H 1.08994 * 109.47690 * 210.02318 * 6 5 4 33 33 H 1.08999 * 109.46606 * 300.00188 * 8 7 6 34 34 H 1.08998 * 109.47076 * 59.99536 * 8 7 6 35 35 H 0.96998 * 120.00124 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.45839 * 301.33896 * 14 12 11 37 37 H 1.09001 * 109.45988 * 61.29264 * 14 12 11 38 38 H 1.09000 * 109.49341 * 178.67716 * 15 14 12 39 39 H 1.09000 * 109.49363 * 58.58897 * 15 14 12 40 40 H 1.09001 * 109.59223 * 294.84423 * 16 15 14 41 41 H 1.09005 * 109.70329 * 174.49725 * 16 15 14 42 42 H 0.96996 * 120.00177 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.58929 * 293.82083 * 26 17 16 44 44 H 1.08996 * 109.58604 * 173.39059 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8486 0.0005 5 6 3.8937 -0.3873 0.0015 6 6 5.3233 -0.8640 0.0017 7 8 5.7751 -1.0141 1.3490 8 6 7.1267 -1.4642 1.4621 9 6 7.4955 -1.5859 2.9182 10 8 6.6809 -1.3145 3.7747 11 7 8.7302 -1.9974 3.2686 12 6 9.0884 -2.1162 4.6841 13 1 8.2199 -2.4487 5.2526 14 6 10.2218 -3.1328 4.8405 15 6 10.5746 -3.2820 6.3222 16 6 11.0561 -1.9336 6.8666 17 7 10.0307 -0.9184 6.5898 18 6 9.5298 -0.1394 7.5985 19 1 9.5060 -0.5159 8.6105 20 6 9.0527 1.1341 7.3204 21 7 9.3731 1.7243 6.1884 22 14 7.9559 2.0104 8.5526 23 1 8.6848 2.1728 9.8363 24 1 7.5847 3.3468 8.0223 25 1 6.7268 1.2084 8.7794 26 6 9.5532 -0.7545 5.2099 27 16 2.5062 -1.3904 -0.0047 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5136 31 1 5.9496 -0.1348 -0.5124 32 1 5.3865 -1.8234 -0.5117 33 1 7.2276 -2.4359 0.9789 34 1 7.7901 -0.7472 0.9784 35 1 9.3815 -2.2148 2.5835 36 1 9.9022 -4.0967 4.4444 37 1 11.0978 -2.7873 4.2916 38 1 11.3657 -4.0234 6.4349 39 1 9.6924 -3.6038 6.8756 40 1 11.9888 -1.6537 6.3770 41 1 11.2161 -2.0075 7.9423 42 1 9.0394 2.6140 5.9938 43 1 10.3633 -0.3786 4.5851 44 1 8.7196 -0.0524 5.1927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316944900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -21.659730 kcal Electronic energy + Delta-G solvation = -26825.383327 eV Core-core repulsion = 22904.861265 eV Total energy + Delta-G solvation = -3920.522062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.43300 -40.99802 -39.30863 -38.45587 -35.80982 -34.48274 -34.42491 -32.02066 -31.65585 -30.81456 -28.64456 -27.35562 -27.20929 -25.30250 -23.97695 -23.52614 -21.58550 -21.09846 -20.86873 -20.45539 -18.78030 -18.32548 -18.13160 -17.26719 -17.08910 -16.83340 -16.55378 -16.32270 -15.85732 -15.57476 -15.26126 -15.23849 -14.74180 -14.53461 -14.34246 -14.13887 -14.03127 -13.96508 -13.52516 -13.47270 -13.23487 -12.98882 -12.94627 -12.69324 -12.50550 -12.27906 -12.09625 -11.69152 -11.60105 -11.58205 -11.36092 -11.26999 -10.97588 -10.84093 -10.73455 -10.67343 -10.58189 -10.09405 -8.70676 -7.92409 -5.38042 -0.73827 -0.15744 0.23579 1.29909 1.36281 1.43348 1.47208 1.64026 1.91257 2.45333 2.72705 3.17213 3.24954 3.53450 3.66893 3.77730 3.86378 3.99438 4.07291 4.15094 4.19408 4.27427 4.28747 4.32910 4.41557 4.49327 4.58409 4.62778 4.68469 4.83356 4.92851 5.02617 5.09797 5.21390 5.23265 5.34056 5.45874 5.52399 5.59629 5.76675 5.86673 6.33792 6.66484 7.09459 7.37135 7.42525 7.83579 8.31507 9.11658 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.002597 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.317729 B =10780.139997 C =12363.867157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.024 4.024 3 N -0.309 5.309 4 N -0.284 5.284 5 C -0.046 4.046 6 C 0.139 3.861 7 O -0.398 6.398 8 C 0.055 3.945 9 C 0.498 3.502 10 O -0.584 6.584 11 N -0.702 5.702 12 C 0.132 3.868 13 H 0.046 0.954 14 C -0.104 4.104 15 C -0.123 4.123 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.264 4.264 19 H 0.068 0.932 20 C -0.051 4.051 21 N -0.930 5.930 22 Si 0.959 3.041 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.287 1.287 26 C 0.176 3.824 27 S 0.259 5.741 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.419 0.581 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.023 0.977 41 H 0.053 0.947 42 H 0.246 0.754 43 H 0.003 0.997 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -16.071 -20.256 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.302 4.302 3 N -0.148 5.148 4 N -0.124 5.124 5 C -0.326 4.326 6 C 0.059 3.941 7 O -0.317 6.317 8 C -0.024 4.024 9 C 0.285 3.715 10 O -0.462 6.462 11 N -0.356 5.356 12 C 0.026 3.974 13 H 0.065 0.935 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.010 3.990 17 N -0.335 5.335 18 C -0.394 4.394 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.188 1.188 24 H -0.222 1.222 25 H -0.214 1.214 26 C 0.049 3.951 27 S 0.503 5.497 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.256 0.744 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.802 -15.341 -19.525 26.696 hybrid contribution -0.122 1.489 0.508 1.578 sum -9.924 -13.852 -19.017 25.535 Atomic orbital electron populations 1.20684 0.80845 1.06030 1.06159 1.30080 1.06395 0.92080 1.01629 1.71440 0.97052 1.28837 1.17481 1.71371 1.07497 1.19220 1.14312 1.29161 1.04433 0.92979 1.05992 1.21012 0.85551 1.03214 0.84274 1.88036 1.28640 1.88747 1.26257 1.22408 0.83974 1.04149 0.91907 1.21154 0.82164 0.76229 0.91995 1.90762 1.51528 1.49891 1.54059 1.45707 1.13434 1.67964 1.08525 1.21478 0.97619 0.97519 0.80827 0.93530 1.21637 0.96841 0.98113 0.97619 1.21909 1.01516 0.97490 0.95287 1.21196 0.90303 0.88778 0.98743 1.44250 1.43868 1.40808 1.04532 1.19453 1.35314 0.94218 0.90436 0.91421 1.25786 1.02617 0.97048 0.99249 1.70145 1.46844 1.13942 1.26617 0.85464 0.79351 0.77114 0.79374 1.18812 1.22224 1.21364 1.20818 0.96257 0.93664 0.84351 1.83230 0.94785 1.09157 1.62560 0.86619 0.87103 0.88907 0.88430 0.85700 0.84570 0.87133 0.74363 0.89165 0.90338 0.88230 0.93241 0.95872 0.92793 0.94524 0.97901 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.49 71.24 0.75 -0.03 16 2 C -0.02 -0.48 7.53 88.47 0.67 0.18 16 3 N -0.31 -9.17 11.66 -50.84 -0.59 -9.77 16 4 N -0.28 -9.07 11.66 -50.85 -0.59 -9.67 16 5 C -0.05 -1.14 7.16 88.46 0.63 -0.50 16 6 C 0.14 2.62 6.53 71.24 0.47 3.08 16 7 O -0.40 -11.31 9.86 -129.94 -1.28 -12.59 16 8 C 0.05 1.17 6.42 71.24 0.46 1.62 16 9 C 0.50 17.24 7.87 87.66 0.69 17.93 16 10 O -0.58 -28.90 16.16 16.02 0.26 -28.64 16 11 N -0.70 -20.98 5.08 -442.16 -2.25 -23.23 16 12 C 0.13 5.08 2.60 45.07 0.12 5.19 16 13 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 14 C -0.10 -2.90 5.35 30.62 0.16 -2.74 16 15 C -0.12 -3.74 6.08 30.67 0.19 -3.56 16 16 C 0.13 5.46 6.51 86.36 0.56 6.03 16 17 N -0.61 -32.13 2.99 -699.11 -2.09 -34.22 16 18 C -0.26 -15.55 9.58 84.03 0.81 -14.75 16 19 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 20 C -0.05 -3.13 4.92 84.86 0.42 -2.71 16 21 N -0.93 -59.74 11.20 21.65 0.24 -59.50 16 22 Si 0.96 49.57 29.59 68.60 2.03 51.60 16 23 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 25 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 26 C 0.18 8.99 4.88 86.36 0.42 9.41 16 27 S 0.26 4.35 23.04 -56.49 -1.30 3.05 16 28 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 8.02 8.60 -92.71 -0.80 7.22 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 2.16 7.93 -2.38 -0.02 2.14 16 42 H 0.25 15.56 8.31 -92.71 -0.77 14.78 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.04 2.38 6.06 -2.39 -0.01 2.36 16 Total: -1.00 -96.45 380.70 0.98 -95.46 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.23 Total: 8.35 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 6.33 Total: 19.16 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -5.28 Total: -136.38 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.02 Total: -41.24 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.03 Total: 51.60 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.30 Total: 3.05 kcal Total: -96.45 0.98 -95.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316944900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.805 kcal (2) G-P(sol) polarization free energy of solvation -96.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds