Wall clock time and date at job start Sat Apr 11 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50710 * 109.46884 * 2 1 4 4 N 1.30274 * 126.27763 * 89.96319 * 3 2 1 5 5 N 1.28674 * 109.37802 * 180.02562 * 4 3 2 6 6 C 1.30274 * 109.37972 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.28314 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47255 * 90.04129 * 7 6 5 9 9 C 1.46900 * 110.99988 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84759 * 336.19164 * 9 8 7 11 11 C 1.53781 * 113.62041 * 107.50022 * 9 8 7 12 12 C 1.53772 * 87.08325 * 139.97965 * 11 9 8 13 13 H 1.09005 * 113.69420 * 89.12404 * 12 11 9 14 14 N 1.46492 * 113.61548 * 220.02151 * 12 11 9 15 15 C 1.34784 * 119.99894 * 252.49981 * 14 12 11 16 16 O 1.21276 * 119.99826 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99855 * 180.02562 * 15 14 12 18 18 S 1.80998 * 109.46844 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99871 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99734 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99683 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00320 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47177 * 89.99526 * 23 21 19 25 25 H 1.48494 * 109.47214 * 209.99812 * 23 21 19 26 26 H 1.48500 * 109.46973 * 330.00239 * 23 21 19 27 27 C 1.53777 * 113.61173 * 205.00014 * 9 8 7 28 28 O 1.34356 * 126.28319 * 270.00440 * 3 2 1 29 29 H 1.09008 * 109.46731 * 299.99640 * 1 2 3 30 30 H 1.08995 * 109.47736 * 59.99431 * 1 2 3 31 31 H 1.08996 * 109.47359 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46581 * 240.00856 * 2 1 3 33 33 H 1.08990 * 109.47483 * 119.99884 * 2 1 3 34 34 H 1.08999 * 109.46941 * 210.04122 * 7 6 5 35 35 H 1.09001 * 109.46891 * 330.03965 * 7 6 5 36 36 H 1.00894 * 111.00028 * 56.04723 * 8 7 6 37 37 H 1.09004 * 113.61149 * 254.53340 * 11 9 8 38 38 H 1.09002 * 113.60949 * 25.42914 * 11 9 8 39 39 H 0.97004 * 120.00748 * 72.49349 * 14 12 11 40 40 H 1.08996 * 109.47182 * 299.99323 * 17 15 14 41 41 H 1.09003 * 109.47642 * 59.99927 * 17 15 14 42 42 H 0.96996 * 119.99852 * 180.02562 * 22 21 19 43 43 H 1.09000 * 113.61579 * 334.56126 * 27 9 8 44 44 H 1.08999 * 113.61560 * 105.38205 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2886 2.1479 1.0502 5 7 2.6986 3.3088 0.6762 6 6 2.7184 3.3616 -0.6253 7 6 3.1353 4.5424 -1.4638 8 7 4.5768 4.4652 -1.7359 9 6 5.0201 5.6031 -2.5523 10 1 4.2133 6.0434 -3.1383 11 6 5.8509 6.6351 -1.7716 12 6 6.7441 6.7430 -3.0186 13 1 6.4103 7.4960 -3.7327 14 7 8.1725 6.8450 -2.7103 15 6 8.8160 8.0175 -2.8775 16 8 8.2124 8.9879 -3.2836 17 6 10.2856 8.1223 -2.5609 18 16 10.8540 9.8096 -2.8862 19 6 12.5522 9.6511 -2.4435 20 1 12.9332 8.7025 -2.0954 21 6 13.4002 10.7456 -2.5424 22 7 14.6686 10.6273 -2.2112 23 14 12.7414 12.3862 -3.1453 24 1 12.2563 13.1804 -1.9880 25 1 13.8242 13.1303 -3.8373 26 1 11.6196 12.1522 -4.0899 27 6 6.2901 5.3164 -3.3706 28 8 2.2972 2.1706 -1.0830 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.5867 4.5311 -2.4055 35 1 2.9159 5.4651 -0.9265 36 1 4.8153 3.5893 -2.1761 37 1 5.3065 7.5516 -1.5437 38 1 6.3614 6.2180 -0.9035 39 1 8.6554 6.0688 -2.3858 40 1 10.4493 7.8795 -1.5110 41 1 10.8428 7.4247 -3.1863 42 1 15.2611 11.3922 -2.2799 43 1 6.9209 4.5388 -2.9398 44 1 6.1003 5.1669 -4.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317102617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:27 Heat of formation + Delta-G solvation = 19.966062 kcal Electronic energy + Delta-G solvation = -25225.005794 eV Core-core repulsion = 21306.288762 eV Total energy + Delta-G solvation = -3918.717032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.67911 -40.18693 -38.48296 -36.61315 -35.87675 -34.76283 -33.03484 -32.42918 -30.72455 -29.22381 -27.06128 -26.02095 -25.61263 -25.12748 -23.45666 -22.78690 -22.33503 -20.51235 -20.10330 -17.93462 -17.82135 -17.59102 -16.96249 -16.49028 -16.28936 -15.90798 -15.49344 -15.25380 -15.01780 -14.96741 -14.68210 -14.25341 -13.87863 -13.49360 -13.38417 -13.14019 -12.82304 -12.79470 -12.74816 -12.71472 -12.57553 -12.25309 -12.03169 -11.98759 -11.69653 -11.36503 -11.27035 -11.23458 -11.00261 -10.90502 -10.57650 -10.03142 -9.84858 -9.51157 -9.17179 -9.00065 -8.90396 -8.49502 -6.90970 -6.28142 -3.99838 0.63443 1.69895 1.93737 2.76948 2.94286 3.17362 3.31608 3.34956 3.50984 3.59173 3.78058 3.82426 4.09223 4.15431 4.24953 4.33957 4.36484 4.47871 4.57657 4.59372 4.67826 4.72976 4.75422 4.95799 5.05797 5.06570 5.09895 5.11066 5.15159 5.23912 5.30603 5.35516 5.45261 5.50225 5.68410 5.77759 5.80175 5.91302 6.02884 6.38380 6.58798 6.61574 7.61975 7.87582 7.94948 8.42594 8.49013 9.18087 10.81147 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.001459 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.039293 B =19183.253574 C =19428.462318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.165 3.835 4 N -0.287 5.287 5 N -0.264 5.264 6 C 0.163 3.837 7 C 0.157 3.843 8 N -0.669 5.669 9 C 0.061 3.939 10 H 0.084 0.916 11 C -0.138 4.138 12 C 0.128 3.872 13 H 0.116 0.884 14 N -0.724 5.724 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.125 4.125 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.148 4.148 28 O -0.227 6.227 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.347 0.653 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.401 0.599 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.095 0.905 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.055 -23.126 -0.619 37.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.046 4.046 4 N -0.134 5.134 5 N -0.111 5.111 6 C -0.049 4.049 7 C 0.027 3.973 8 N -0.302 5.302 9 C -0.049 4.049 10 H 0.102 0.898 11 C -0.177 4.177 12 C 0.021 3.979 13 H 0.134 0.866 14 N -0.377 5.377 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.276 4.276 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.187 4.187 28 O -0.107 6.107 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.166 0.834 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.569 -20.755 0.541 36.130 hybrid contribution 0.530 -1.412 -1.513 2.136 sum -29.039 -22.167 -0.972 36.546 Atomic orbital electron populations 1.21809 0.92517 1.03531 1.03158 1.20195 0.97232 0.83241 1.05909 1.28117 0.98984 0.97912 0.79614 1.74467 1.14892 0.98438 1.25556 1.74446 1.14945 1.12548 1.09182 1.27851 0.98510 0.86699 0.91847 1.20414 0.89684 0.90585 0.96596 1.60563 1.12358 1.06132 1.51113 1.22899 0.95714 0.92113 0.94126 0.89774 1.23612 0.97286 0.98396 0.98454 1.22190 0.80879 0.96958 0.97827 0.86629 1.45898 1.09587 1.12987 1.69269 1.20318 0.88871 0.82481 0.76481 1.90688 1.68192 1.36454 1.44130 1.23291 0.94005 1.04902 1.05385 1.84774 1.10974 1.08244 1.87589 1.22324 0.91671 1.01701 1.51242 0.89395 1.24711 0.94066 0.98777 0.93708 1.69938 1.03872 1.31707 1.46194 0.86733 0.80381 0.83767 0.80962 1.19194 1.19949 1.15939 1.23638 0.96560 0.98047 1.00463 1.84768 1.63879 1.23455 1.38555 0.91501 0.92063 0.90313 0.88386 0.86917 0.91514 0.85952 0.83394 0.90852 0.88559 0.76491 0.88448 0.88468 0.91949 0.88700 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.89 37.16 0.37 -0.04 16 2 C -0.03 -0.09 6.56 -27.88 -0.18 -0.28 16 3 C 0.16 1.31 7.73 -12.94 -0.10 1.21 16 4 N -0.29 -3.19 12.22 32.55 0.40 -2.80 16 5 N -0.26 -3.10 12.22 32.55 0.40 -2.71 16 6 C 0.16 1.43 7.99 -12.94 -0.10 1.33 16 7 C 0.16 0.94 6.15 -4.98 -0.03 0.91 16 8 N -0.67 -4.30 6.55 -107.13 -0.70 -5.00 16 9 C 0.06 0.39 4.14 -66.90 -0.28 0.11 16 10 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 11 C -0.14 -1.24 7.68 -25.92 -0.20 -1.43 16 12 C 0.13 1.28 4.24 -67.12 -0.28 0.99 16 13 H 0.12 1.34 7.46 -51.93 -0.39 0.95 16 14 N -0.72 -8.73 5.35 -53.02 -0.28 -9.02 16 15 C 0.53 9.21 7.85 -10.98 -0.09 9.12 16 16 O -0.52 -10.95 15.46 5.56 0.09 -10.87 16 17 C -0.13 -2.40 6.16 36.01 0.22 -2.18 16 18 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 19 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 23 Si 0.86 21.81 27.74 -169.99 -4.71 17.10 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 27 C -0.15 -0.97 7.40 -25.92 -0.19 -1.17 16 28 O -0.23 -1.86 10.87 5.40 0.06 -1.80 16 29 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.25 8.13 -51.93 -0.42 -0.17 16 35 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.35 1.93 8.54 -39.29 -0.34 1.60 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 3.79 8.73 -40.82 -0.36 3.43 16 40 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 41 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -36.96 389.98 -7.31 -44.27 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.56 Total: -0.14 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.65 Total: -3.47 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.59 Total: -45.38 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.14 Total: -12.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.96 -7.31 -44.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317102617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.235 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds