Wall clock time and date at job start Sat Apr 11 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50710 * 109.46884 * 2 1 4 4 N 1.30274 * 126.27763 * 89.96319 * 3 2 1 5 5 N 1.28674 * 109.37802 * 180.02562 * 4 3 2 6 6 C 1.30274 * 109.37972 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.28314 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47255 * 90.04129 * 7 6 5 9 9 C 1.46900 * 110.99988 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84759 * 336.19164 * 9 8 7 11 11 C 1.53781 * 113.62041 * 107.50022 * 9 8 7 12 12 C 1.53772 * 87.08325 * 139.97965 * 11 9 8 13 13 H 1.09005 * 113.69420 * 89.12404 * 12 11 9 14 14 N 1.46492 * 113.61548 * 220.02151 * 12 11 9 15 15 C 1.34784 * 119.99894 * 252.49981 * 14 12 11 16 16 O 1.21276 * 119.99826 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99855 * 180.02562 * 15 14 12 18 18 S 1.80998 * 109.46844 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99871 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99734 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99683 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00320 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47177 * 89.99526 * 23 21 19 25 25 H 1.48494 * 109.47214 * 209.99812 * 23 21 19 26 26 H 1.48500 * 109.46973 * 330.00239 * 23 21 19 27 27 C 1.53777 * 113.61173 * 205.00014 * 9 8 7 28 28 O 1.34356 * 126.28319 * 270.00440 * 3 2 1 29 29 H 1.09008 * 109.46731 * 299.99640 * 1 2 3 30 30 H 1.08995 * 109.47736 * 59.99431 * 1 2 3 31 31 H 1.08996 * 109.47359 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46581 * 240.00856 * 2 1 3 33 33 H 1.08990 * 109.47483 * 119.99884 * 2 1 3 34 34 H 1.08999 * 109.46941 * 210.04122 * 7 6 5 35 35 H 1.09001 * 109.46891 * 330.03965 * 7 6 5 36 36 H 1.00894 * 111.00028 * 56.04723 * 8 7 6 37 37 H 1.09004 * 113.61149 * 254.53340 * 11 9 8 38 38 H 1.09002 * 113.60949 * 25.42914 * 11 9 8 39 39 H 0.97004 * 120.00748 * 72.49349 * 14 12 11 40 40 H 1.08996 * 109.47182 * 299.99323 * 17 15 14 41 41 H 1.09003 * 109.47642 * 59.99927 * 17 15 14 42 42 H 0.96996 * 119.99852 * 180.02562 * 22 21 19 43 43 H 1.09000 * 113.61579 * 334.56126 * 27 9 8 44 44 H 1.08999 * 113.61560 * 105.38205 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2886 2.1479 1.0502 5 7 2.6986 3.3088 0.6762 6 6 2.7184 3.3616 -0.6253 7 6 3.1353 4.5424 -1.4638 8 7 4.5768 4.4652 -1.7359 9 6 5.0201 5.6031 -2.5523 10 1 4.2133 6.0434 -3.1383 11 6 5.8509 6.6351 -1.7716 12 6 6.7441 6.7430 -3.0186 13 1 6.4103 7.4960 -3.7327 14 7 8.1725 6.8450 -2.7103 15 6 8.8160 8.0175 -2.8775 16 8 8.2124 8.9879 -3.2836 17 6 10.2856 8.1223 -2.5609 18 16 10.8540 9.8096 -2.8862 19 6 12.5522 9.6511 -2.4435 20 1 12.9332 8.7025 -2.0954 21 6 13.4002 10.7456 -2.5424 22 7 14.6686 10.6273 -2.2112 23 14 12.7414 12.3862 -3.1453 24 1 12.2563 13.1804 -1.9880 25 1 13.8242 13.1303 -3.8373 26 1 11.6196 12.1522 -4.0899 27 6 6.2901 5.3164 -3.3706 28 8 2.2972 2.1706 -1.0830 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.5867 4.5311 -2.4055 35 1 2.9159 5.4651 -0.9265 36 1 4.8153 3.5893 -2.1761 37 1 5.3065 7.5516 -1.5437 38 1 6.3614 6.2180 -0.9035 39 1 8.6554 6.0688 -2.3858 40 1 10.4493 7.8795 -1.5110 41 1 10.8428 7.4247 -3.1863 42 1 15.2611 11.3922 -2.2799 43 1 6.9209 4.5388 -2.9398 44 1 6.1003 5.1669 -4.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317102617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:26 Heat of formation + Delta-G solvation = -12.410599 kcal Electronic energy + Delta-G solvation = -25226.409751 eV Core-core repulsion = 21306.288762 eV Total energy + Delta-G solvation = -3920.120990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.32028 -41.13093 -39.54947 -37.27894 -36.50464 -35.23728 -34.67260 -34.04377 -31.41757 -30.55160 -27.88270 -27.61285 -26.64734 -25.60863 -24.25894 -23.34866 -22.83723 -21.73622 -20.85407 -19.80090 -18.56400 -18.20816 -17.95486 -17.59095 -17.11279 -17.00329 -16.49442 -16.41053 -16.15493 -15.79775 -15.52465 -15.28113 -14.90383 -14.85011 -14.57084 -13.94876 -13.78330 -13.62831 -13.50059 -13.35693 -13.34158 -13.15982 -13.00687 -12.98707 -12.79334 -12.71281 -12.35465 -12.22826 -12.00929 -11.88421 -11.82526 -11.57646 -11.16829 -10.93796 -10.67480 -10.53372 -10.02765 -9.58594 -8.98977 -8.51364 -6.22115 0.04385 1.00033 1.15166 1.27210 1.31993 1.47378 1.57167 1.57379 2.24071 2.28774 2.69035 2.74210 2.87054 3.18012 3.35048 3.51094 3.56649 3.76955 3.89656 3.95020 4.03108 4.11603 4.12911 4.20854 4.25275 4.31158 4.43878 4.48007 4.53917 4.56367 4.75745 4.82024 4.85227 4.90903 4.98325 5.02976 5.07487 5.14381 5.25314 5.56987 5.70817 5.87426 6.11492 6.19585 6.51341 6.93883 7.21907 7.22757 8.61143 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.001459 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.039293 B =19183.253574 C =19428.462318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C 0.174 3.826 4 N -0.330 5.330 5 N -0.309 5.309 6 C 0.169 3.831 7 C 0.160 3.840 8 N -0.678 5.678 9 C 0.078 3.922 10 H 0.104 0.896 11 C -0.141 4.141 12 C 0.113 3.887 13 H 0.101 0.899 14 N -0.701 5.701 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.113 4.113 18 S -0.175 6.175 19 C -0.531 4.531 20 H 0.061 0.939 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.236 1.236 27 C -0.130 4.130 28 O -0.227 6.227 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.355 0.645 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.416 0.584 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.277 0.723 43 H 0.104 0.896 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.986 -24.870 -1.929 39.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.066 4.066 3 C -0.037 4.037 4 N -0.176 5.176 5 N -0.155 5.155 6 C -0.044 4.044 7 C 0.030 3.970 8 N -0.312 5.312 9 C -0.032 4.032 10 H 0.121 0.879 11 C -0.181 4.181 12 C 0.008 3.992 13 H 0.119 0.881 14 N -0.353 5.353 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.264 4.264 18 S 0.051 5.949 19 C -0.678 4.678 20 H 0.079 0.921 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.160 1.160 27 C -0.168 4.168 28 O -0.106 6.106 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.175 0.825 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.253 0.747 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -31.511 -22.563 -0.742 38.763 hybrid contribution 1.055 -1.070 -1.053 1.835 sum -30.455 -23.633 -1.795 38.591 Atomic orbital electron populations 1.21803 0.91795 1.04776 1.02272 1.20527 0.97655 0.80808 1.07591 1.28989 0.96985 0.98837 0.78896 1.74384 1.16957 0.98998 1.27215 1.74360 1.16777 1.13447 1.10904 1.28323 0.97342 0.87294 0.91418 1.20561 0.89733 0.89342 0.97397 1.60427 1.12798 1.06492 1.51507 1.22755 0.96007 0.91229 0.93176 0.87861 1.23592 0.97596 0.99057 0.97837 1.22441 0.79169 0.99180 0.98456 0.88134 1.45726 1.10580 1.11671 1.67341 1.19954 0.87934 0.83448 0.76485 1.90677 1.68668 1.38191 1.46596 1.23296 0.95776 1.00731 1.06630 1.84679 1.08570 1.13827 1.87782 1.22479 0.93773 1.00747 1.50824 0.92060 1.25565 0.94308 1.02166 0.93861 1.70017 1.05063 1.33084 1.47382 0.85862 0.80103 0.79737 0.80636 1.18763 1.18271 1.15989 1.23550 0.96154 0.95465 1.01640 1.84792 1.63959 1.23355 1.38530 0.93008 0.92317 0.87976 0.85925 0.85935 0.88569 0.86043 0.82509 0.91841 0.89548 0.74692 0.87124 0.86801 0.91371 0.87753 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.89 71.98 0.71 0.17 16 2 C -0.03 -0.14 6.56 29.85 0.20 0.06 16 3 C 0.17 2.60 7.73 88.34 0.68 3.28 16 4 N -0.33 -7.39 12.22 -165.50 -2.02 -9.41 16 5 N -0.31 -7.28 12.22 -165.50 -2.02 -9.30 16 6 C 0.17 2.78 7.99 88.34 0.71 3.49 16 7 C 0.16 1.55 6.15 85.56 0.53 2.08 16 8 N -0.68 -6.97 6.55 -492.86 -3.23 -10.20 16 9 C 0.08 0.76 4.14 45.44 0.19 0.95 16 10 H 0.10 0.68 7.87 -2.39 -0.02 0.66 16 11 C -0.14 -2.31 7.68 31.12 0.24 -2.08 16 12 C 0.11 2.04 4.24 45.52 0.19 2.24 16 13 H 0.10 2.21 7.46 -2.38 -0.02 2.19 16 14 N -0.70 -15.61 5.35 -440.04 -2.36 -17.97 16 15 C 0.54 18.01 7.85 87.66 0.69 18.69 16 16 O -0.56 -23.55 15.46 -3.02 -0.05 -23.60 16 17 C -0.11 -4.25 6.16 71.24 0.44 -3.81 16 18 S -0.18 -8.87 18.55 -56.49 -1.05 -9.91 16 19 C -0.53 -31.08 10.04 67.96 0.68 -30.40 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 21 C 0.05 2.73 5.50 84.86 0.47 3.20 16 22 N -0.92 -56.14 13.97 21.65 0.30 -55.84 16 23 Si 0.91 45.15 27.74 68.60 1.90 47.06 16 24 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 27 C -0.13 -1.27 7.40 31.12 0.23 -1.04 16 28 O -0.23 -3.36 10.87 -3.59 -0.04 -3.40 16 29 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.10 0.40 8.13 -2.39 -0.02 0.38 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.35 2.86 8.54 -89.70 -0.77 2.10 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 6.81 8.73 -92.71 -0.81 6.00 16 40 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 41 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 42 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.10 0.89 8.12 -2.39 -0.02 0.87 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -82.67 389.98 -3.18 -85.85 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -0.57 Total: 9.89 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.95 Total: -3.17 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -9.33 Total: -102.72 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.09 Total: -27.00 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.91 kcal Total: -82.67 -3.18 -85.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317102617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.443 kcal (2) G-P(sol) polarization free energy of solvation -82.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds