Wall clock time and date at job start Sat Apr 11 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47156 * 2 1 4 4 C 1.53000 * 109.47186 * 240.00133 * 2 1 3 5 5 C 1.50696 * 109.47368 * 119.99945 * 2 1 3 6 6 N 1.29447 * 126.07083 * 59.97316 * 5 2 1 7 7 N 1.26099 * 117.93238 * 179.97438 * 6 5 2 8 8 C 1.30225 * 117.64011 * 0.02562 * 7 6 5 9 9 N 1.38837 * 126.15960 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99545 * 0.02562 * 9 8 7 11 11 O 1.21383 * 120.00398 * 0.02562 * 10 9 8 12 12 C 1.49315 * 119.99715 * 179.72246 * 10 9 8 13 13 O 1.21363 * 120.00285 * 0.28191 * 12 10 9 14 14 N 1.34777 * 120.00116 * 180.27489 * 12 10 9 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47198 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47258 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00502 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99811 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 90.00102 * 22 20 18 24 24 H 1.48496 * 109.47272 * 210.00363 * 22 20 18 25 25 H 1.48503 * 109.47010 * 330.00037 * 22 20 18 26 26 S 1.76488 * 126.07026 * 240.25843 * 5 2 1 27 27 H 1.09006 * 109.46810 * 300.00456 * 1 2 3 28 28 H 1.09004 * 109.47022 * 59.99800 * 1 2 3 29 29 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46951 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46808 * 300.00022 * 3 2 1 32 32 H 1.08992 * 109.47416 * 60.00059 * 3 2 1 33 33 H 1.09007 * 109.46684 * 300.00034 * 4 2 1 34 34 H 1.08996 * 109.47400 * 59.99516 * 4 2 1 35 35 H 1.08994 * 109.47382 * 180.02562 * 4 2 1 36 36 H 0.97001 * 119.99970 * 180.02562 * 9 8 7 37 37 H 0.97001 * 120.00145 * 0.02562 * 14 12 10 38 38 H 1.08995 * 109.47424 * 300.00018 * 15 14 12 39 39 H 1.08998 * 109.47492 * 60.00443 * 15 14 12 40 40 H 1.09000 * 109.46887 * 300.00491 * 16 15 14 41 41 H 1.08998 * 109.46846 * 59.99668 * 16 15 14 42 42 H 1.09009 * 109.47216 * 299.99697 * 17 16 15 43 43 H 1.08998 * 109.47610 * 59.99918 * 17 16 15 44 44 H 0.97001 * 120.00563 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.7928 -1.9414 1.5509 7 7 2.2936 -2.3813 2.6214 8 6 3.0176 -1.5634 3.3304 9 7 3.6488 -1.8588 4.5312 10 6 3.5395 -3.0918 5.0644 11 8 2.8898 -3.9441 4.4945 12 6 4.2234 -3.4113 6.3527 13 8 4.8735 -2.5593 6.9223 14 7 4.1188 -4.6459 6.8831 15 6 4.7893 -4.9592 8.1473 16 6 4.5128 -6.4162 8.5239 17 6 5.2125 -6.7433 9.8446 18 6 4.9406 -8.1785 10.2152 19 1 4.3295 -8.7954 9.5732 20 6 5.4721 -8.7038 11.3739 21 7 6.2159 -7.9524 12.1560 22 14 5.1345 -10.4826 11.8336 23 1 6.1871 -11.3529 11.2507 24 1 5.1401 -10.6214 13.3121 25 1 3.8078 -10.8876 11.3035 26 16 3.0460 -0.0095 2.4938 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7216 -1.2491 36 1 4.1684 -1.1778 4.9864 37 1 3.5995 -5.3270 6.4277 38 1 5.8633 -4.8109 8.0355 39 1 4.4116 -4.3030 8.9314 40 1 3.4388 -6.5650 8.6356 41 1 4.8908 -7.0721 7.7398 42 1 6.2866 -6.5944 9.7333 43 1 4.8341 -6.0873 10.6285 44 1 6.5902 -8.3221 12.9709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318332604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:54 Heat of formation + Delta-G solvation = -19.566131 kcal Electronic energy + Delta-G solvation = -25591.498697 eV Core-core repulsion = 21671.067421 eV Total energy + Delta-G solvation = -3920.431277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.71211 -40.78309 -38.87438 -37.62104 -36.16276 -35.31149 -33.40091 -31.33883 -30.55011 -28.00703 -27.80051 -27.68048 -26.73013 -24.91014 -23.24252 -22.00264 -20.95220 -20.71306 -20.12386 -19.01004 -18.34770 -17.39695 -16.69197 -16.58732 -16.38330 -15.86770 -15.51691 -15.27571 -14.95796 -14.48513 -14.48037 -14.48015 -14.05656 -13.76193 -13.71816 -12.92162 -12.87477 -12.35833 -12.33804 -12.24011 -12.03222 -11.99744 -11.92359 -11.87738 -11.60517 -11.47786 -10.93699 -10.84021 -10.78031 -10.63247 -10.47941 -10.05351 -9.95857 -9.93930 -9.47706 -9.18605 -9.17495 -9.12595 -8.40507 -6.05313 -4.08464 -0.07270 0.03032 0.75372 1.17225 1.90205 2.29146 2.97310 3.08294 3.29822 3.36362 3.39565 3.58242 4.09661 4.17469 4.28814 4.41757 4.42968 4.56797 4.87741 5.01083 5.05853 5.20256 5.29715 5.30848 5.33827 5.37078 5.43701 5.48606 5.53566 5.60536 5.74857 5.76324 5.99591 6.08100 6.24002 6.47143 6.62911 6.89178 7.02222 7.35494 7.57940 7.68859 7.78957 7.92753 8.30205 8.33590 8.97919 9.56196 11.05864 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036144 B = 0.001574 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.493691 B =17781.073981 C =18348.568327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.019 3.981 3 C -0.154 4.154 4 C -0.138 4.138 5 C 0.033 3.967 6 N -0.232 5.232 7 N -0.262 5.262 8 C 0.250 3.750 9 N -0.605 5.605 10 C 0.504 3.496 11 O -0.443 6.443 12 C 0.510 3.490 13 O -0.520 6.520 14 N -0.684 5.684 15 C 0.113 3.887 16 C -0.124 4.124 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 S 0.074 5.926 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.438 0.562 37 H 0.413 0.587 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 22.815 -26.283 35.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 C -0.212 4.212 4 C -0.196 4.196 5 C -0.250 4.250 6 N -0.067 5.067 7 N -0.106 5.106 8 C -0.120 4.120 9 N -0.259 5.259 10 C 0.282 3.718 11 O -0.308 6.308 12 C 0.288 3.712 13 O -0.397 6.397 14 N -0.336 5.336 15 C -0.008 4.008 16 C -0.162 4.162 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 S 0.315 5.685 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.279 0.721 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.151 22.390 -25.975 35.248 hybrid contribution 0.032 -0.921 0.545 1.070 sum -8.120 21.469 -25.430 34.257 Atomic orbital electron populations 1.21899 0.91678 1.03525 1.02547 1.19220 0.96808 0.94128 0.88439 1.22079 1.01774 0.93866 1.03479 1.21897 1.01427 1.01271 0.95049 1.29883 1.00649 0.93524 1.00902 1.70976 1.17640 1.09892 1.08166 1.71735 1.11004 1.26653 1.01161 1.26889 0.98555 0.92918 0.93617 1.42571 1.49763 1.15183 1.18362 1.20875 0.82157 0.81887 0.86840 1.90929 1.35255 1.44912 1.59692 1.19462 0.82497 0.84354 0.84855 1.90797 1.40573 1.46792 1.61500 1.46082 1.51005 1.11449 1.25018 1.21936 0.97335 0.99139 0.82432 1.21949 1.01581 0.91189 1.01451 1.19034 0.95703 0.96801 0.89780 1.21195 1.31667 0.96559 1.06807 0.92537 1.25019 0.95098 0.97888 0.96384 1.69956 1.33796 1.36026 1.13478 0.86569 0.78703 0.85013 0.77568 1.20636 1.21195 1.19856 1.85852 1.51803 1.11780 1.19065 0.92242 0.91063 0.91146 0.91708 0.90348 0.91719 0.91151 0.91065 0.92234 0.72150 0.75027 0.90761 0.90754 0.92300 0.92298 0.96156 0.96141 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.46 37.16 0.31 -0.40 16 2 C 0.02 0.11 0.99 -155.66 -0.15 -0.05 16 3 C -0.15 -0.56 7.60 37.16 0.28 -0.28 16 4 C -0.14 -0.71 8.46 37.16 0.31 -0.40 16 5 C 0.03 0.29 6.10 -13.29 -0.08 0.21 16 6 N -0.23 -2.88 11.56 33.59 0.39 -2.49 16 7 N -0.26 -3.70 9.79 31.02 0.30 -3.40 16 8 C 0.25 2.84 8.41 -87.02 -0.73 2.11 16 9 N -0.60 -6.42 5.39 -12.07 -0.07 -6.48 16 10 C 0.50 6.57 7.85 -11.65 -0.09 6.48 16 11 O -0.44 -6.91 15.19 5.47 0.08 -6.83 16 12 C 0.51 7.05 7.88 -11.65 -0.09 6.96 16 13 O -0.52 -7.98 16.47 5.49 0.09 -7.89 16 14 N -0.68 -9.60 5.55 -60.78 -0.34 -9.94 16 15 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 16 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 17 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 18 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 S 0.07 0.57 22.19 -107.50 -2.39 -1.82 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.23 8.01 -51.93 -0.42 -0.18 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.23 8.00 -51.93 -0.42 -0.18 16 33 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.44 3.48 8.29 -40.82 -0.34 3.14 16 37 H 0.41 5.32 7.94 -40.82 -0.32 5.00 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -33.68 390.64 -7.80 -41.49 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.53 Total: -0.44 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.95 Total: 1.21 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 1.03 Total: -47.96 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.17 Total: -14.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.39 Total: -1.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.68 -7.80 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318332604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.922 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds