Wall clock time and date at job start Sat Apr 11 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47156 * 2 1 4 4 C 1.53000 * 109.47186 * 240.00133 * 2 1 3 5 5 C 1.50696 * 109.47368 * 119.99945 * 2 1 3 6 6 N 1.29447 * 126.07083 * 59.97316 * 5 2 1 7 7 N 1.26099 * 117.93238 * 179.97438 * 6 5 2 8 8 C 1.30225 * 117.64011 * 0.02562 * 7 6 5 9 9 N 1.38837 * 126.15960 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99545 * 0.02562 * 9 8 7 11 11 O 1.21383 * 120.00398 * 0.02562 * 10 9 8 12 12 C 1.49315 * 119.99715 * 179.72246 * 10 9 8 13 13 O 1.21363 * 120.00285 * 0.28191 * 12 10 9 14 14 N 1.34777 * 120.00116 * 180.27489 * 12 10 9 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47198 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47258 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00502 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99811 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 90.00102 * 22 20 18 24 24 H 1.48496 * 109.47272 * 210.00363 * 22 20 18 25 25 H 1.48503 * 109.47010 * 330.00037 * 22 20 18 26 26 S 1.76488 * 126.07026 * 240.25843 * 5 2 1 27 27 H 1.09006 * 109.46810 * 300.00456 * 1 2 3 28 28 H 1.09004 * 109.47022 * 59.99800 * 1 2 3 29 29 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46951 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46808 * 300.00022 * 3 2 1 32 32 H 1.08992 * 109.47416 * 60.00059 * 3 2 1 33 33 H 1.09007 * 109.46684 * 300.00034 * 4 2 1 34 34 H 1.08996 * 109.47400 * 59.99516 * 4 2 1 35 35 H 1.08994 * 109.47382 * 180.02562 * 4 2 1 36 36 H 0.97001 * 119.99970 * 180.02562 * 9 8 7 37 37 H 0.97001 * 120.00145 * 0.02562 * 14 12 10 38 38 H 1.08995 * 109.47424 * 300.00018 * 15 14 12 39 39 H 1.08998 * 109.47492 * 60.00443 * 15 14 12 40 40 H 1.09000 * 109.46887 * 300.00491 * 16 15 14 41 41 H 1.08998 * 109.46846 * 59.99668 * 16 15 14 42 42 H 1.09009 * 109.47216 * 299.99697 * 17 16 15 43 43 H 1.08998 * 109.47610 * 59.99918 * 17 16 15 44 44 H 0.97001 * 120.00563 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.7928 -1.9414 1.5509 7 7 2.2936 -2.3813 2.6214 8 6 3.0176 -1.5634 3.3304 9 7 3.6488 -1.8588 4.5312 10 6 3.5395 -3.0918 5.0644 11 8 2.8898 -3.9441 4.4945 12 6 4.2234 -3.4113 6.3527 13 8 4.8735 -2.5593 6.9223 14 7 4.1188 -4.6459 6.8831 15 6 4.7893 -4.9592 8.1473 16 6 4.5128 -6.4162 8.5239 17 6 5.2125 -6.7433 9.8446 18 6 4.9406 -8.1785 10.2152 19 1 4.3295 -8.7954 9.5732 20 6 5.4721 -8.7038 11.3739 21 7 6.2159 -7.9524 12.1560 22 14 5.1345 -10.4826 11.8336 23 1 6.1871 -11.3529 11.2507 24 1 5.1401 -10.6214 13.3121 25 1 3.8078 -10.8876 11.3035 26 16 3.0460 -0.0095 2.4938 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7216 -1.2491 36 1 4.1684 -1.1778 4.9864 37 1 3.5995 -5.3270 6.4277 38 1 5.8633 -4.8109 8.0355 39 1 4.4116 -4.3030 8.9314 40 1 3.4388 -6.5650 8.6356 41 1 4.8908 -7.0721 7.7398 42 1 6.2866 -6.5944 9.7333 43 1 4.8341 -6.0873 10.6285 44 1 6.5902 -8.3221 12.9709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318332604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:52 Heat of formation + Delta-G solvation = -42.959342 kcal Electronic energy + Delta-G solvation = -25592.513103 eV Core-core repulsion = 21671.067421 eV Total energy + Delta-G solvation = -3921.445682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.60520 -41.78444 -39.97145 -38.16171 -37.36248 -36.47469 -35.21854 -33.09463 -31.37041 -29.15067 -28.32140 -28.20164 -27.86916 -26.13728 -24.69814 -22.99765 -22.40389 -21.63878 -21.03494 -19.99902 -19.24641 -18.56212 -18.08405 -17.67676 -17.64989 -16.88740 -16.64848 -16.36951 -16.11969 -16.03232 -15.30626 -15.18019 -14.94117 -14.84450 -14.45095 -14.29248 -13.79328 -13.56170 -13.31775 -13.22399 -13.15791 -12.80117 -12.77240 -12.72357 -12.62086 -12.56952 -12.41651 -12.04268 -11.95759 -11.71061 -11.65637 -11.46689 -11.27390 -11.20251 -10.83386 -10.72425 -10.54744 -10.39658 -10.00560 -8.19802 -6.30374 -0.87013 -0.71853 0.02035 0.14860 0.93419 1.42034 1.42452 1.43931 1.53536 1.91197 2.11260 2.42000 2.91485 3.10494 3.14318 3.56272 3.75228 3.89942 4.04737 4.06303 4.17599 4.32242 4.51554 4.56022 4.72164 4.74090 4.79375 4.83787 4.90956 4.95746 4.96228 5.01596 5.12769 5.16272 5.23635 5.34856 5.36879 5.39246 5.51868 5.70979 5.84510 5.97633 6.23321 6.30300 6.66253 6.86518 7.38989 7.51112 8.91848 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036144 B = 0.001574 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.493691 B =17781.073981 C =18348.568327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.036 3.964 6 N -0.270 5.270 7 N -0.303 5.303 8 C 0.221 3.779 9 N -0.592 5.592 10 C 0.513 3.487 11 O -0.472 6.472 12 C 0.518 3.482 13 O -0.534 6.534 14 N -0.680 5.680 15 C 0.127 3.873 16 C -0.108 4.108 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.063 0.937 20 C 0.000 4.000 21 N -0.931 5.931 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.264 1.264 26 S 0.155 5.845 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.450 0.550 37 H 0.421 0.579 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.067 0.933 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 24.263 -28.045 38.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 C -0.211 4.211 4 C -0.195 4.195 5 C -0.247 4.247 6 N -0.104 5.104 7 N -0.147 5.147 8 C -0.150 4.150 9 N -0.247 5.247 10 C 0.292 3.708 11 O -0.340 6.340 12 C 0.297 3.703 13 O -0.411 6.411 14 N -0.332 5.332 15 C 0.005 3.995 16 C -0.146 4.146 17 C -0.013 4.013 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.188 1.188 26 S 0.397 5.603 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.293 0.707 37 H 0.258 0.742 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.720 23.874 -27.763 37.640 hybrid contribution 0.201 -1.206 0.985 1.570 sum -8.519 22.669 -26.777 36.104 Atomic orbital electron populations 1.21905 0.91237 1.02627 1.03731 1.19498 0.97155 0.95175 0.87152 1.22119 1.02003 0.92203 1.04811 1.21902 1.01342 1.00445 0.95805 1.30660 0.99279 0.92987 1.01737 1.70959 1.19307 1.11746 1.08421 1.71680 1.12023 1.28834 1.02125 1.27056 0.99073 0.94998 0.93830 1.42359 1.49439 1.14617 1.18284 1.20546 0.81631 0.82422 0.86219 1.90925 1.36686 1.45989 1.60360 1.19518 0.82017 0.83852 0.84957 1.90792 1.41184 1.47170 1.61991 1.45874 1.50984 1.11984 1.24354 1.21569 0.97311 0.97319 0.83334 1.21658 1.01280 0.93046 0.98603 1.18935 0.94838 0.95382 0.92156 1.21686 1.31467 0.97991 1.07039 0.91900 1.25942 0.94881 1.02476 0.96453 1.70085 1.34950 1.38100 1.14017 0.85470 0.78976 0.79508 0.77224 1.19903 1.20915 1.18803 1.85546 1.50018 1.08084 1.16694 0.92356 0.88572 0.93109 0.91372 0.88131 0.91383 0.93114 0.88575 0.92352 0.70737 0.74183 0.91090 0.91083 0.91488 0.91467 0.98338 0.98319 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.46 71.98 0.61 -0.59 16 2 C 0.02 0.14 0.99 -52.93 -0.05 0.09 16 3 C -0.15 -0.63 7.60 71.98 0.55 -0.09 16 4 C -0.14 -1.20 8.46 71.98 0.61 -0.59 16 5 C 0.04 0.59 6.10 88.46 0.54 1.13 16 6 N -0.27 -6.77 11.56 -47.65 -0.55 -7.32 16 7 N -0.30 -8.70 9.79 -55.76 -0.55 -9.25 16 8 C 0.22 4.90 8.41 179.09 1.51 6.41 16 9 N -0.59 -12.26 5.39 -310.45 -1.67 -13.93 16 10 C 0.51 13.34 7.85 87.23 0.68 14.02 16 11 O -0.47 -14.95 15.19 -3.35 -0.05 -15.00 16 12 C 0.52 14.08 7.88 87.23 0.69 14.76 16 13 O -0.53 -16.05 16.47 -3.29 -0.05 -16.10 16 14 N -0.68 -18.75 5.55 -464.55 -2.58 -21.33 16 15 C 0.13 4.09 5.67 86.38 0.49 4.58 16 16 C -0.11 -4.04 5.27 30.59 0.16 -3.88 16 17 C 0.02 1.24 4.97 29.85 0.15 1.39 16 18 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 19 H 0.06 3.32 7.74 -2.92 -0.02 3.29 16 20 C 0.00 0.03 5.46 84.66 0.46 0.49 16 21 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 22 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 S 0.15 2.07 22.19 -56.49 -1.25 0.82 16 27 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.26 8.01 -2.39 -0.02 0.24 16 31 H 0.10 0.03 8.14 -2.38 -0.02 0.01 16 32 H 0.07 0.26 8.00 -2.39 -0.02 0.24 16 33 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.45 6.67 8.29 -92.71 -0.77 5.90 16 37 H 0.42 10.59 7.94 -92.71 -0.74 9.85 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -74.06 390.64 1.76 -72.30 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -0.47 Total: 11.75 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.63 Total: 7.86 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -5.06 Total: -107.45 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.11 Total: -31.10 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.25 Total: 0.82 kcal Total: -74.06 1.76 -72.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318332604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds