Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47377 * 2 1 4 4 H 1.09003 * 109.46826 * 305.00099 * 3 2 1 5 5 C 1.52994 * 109.47656 * 184.99558 * 3 2 1 6 6 N 1.46493 * 109.47610 * 184.99975 * 5 3 2 7 7 C 1.34775 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21278 * 119.99870 * 355.09986 * 7 6 5 9 9 C 1.50707 * 119.99891 * 175.10360 * 7 6 5 10 10 H 1.08998 * 109.52162 * 322.51367 * 9 7 6 11 11 O 1.43073 * 109.52151 * 202.38316 * 9 7 6 12 12 C 1.43206 * 113.51499 * 297.98228 * 11 9 7 13 13 C 1.53141 * 109.18840 * 302.09207 * 12 11 9 14 14 O 1.43071 * 109.15107 * 55.31783 * 13 12 11 15 15 C 1.43074 * 113.59427 * 302.04668 * 14 13 12 16 16 H 1.09006 * 109.57719 * 298.02037 * 15 14 13 17 17 C 1.53000 * 109.52836 * 177.85319 * 15 14 13 18 18 F 1.39896 * 109.47069 * 307.15165 * 17 15 14 19 19 F 1.39904 * 109.46913 * 67.15322 * 17 15 14 20 20 F 1.39902 * 109.47070 * 187.15004 * 17 15 14 21 21 N 1.46511 * 109.47087 * 64.99427 * 3 2 1 22 22 C 1.36939 * 119.99976 * 275.00413 * 21 3 2 23 23 H 1.07999 * 119.99808 * 359.97438 * 22 21 3 24 24 C 1.38810 * 119.99592 * 180.02562 * 22 21 3 25 25 N 1.31621 * 120.00288 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99756 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47324 * 59.99275 * 26 24 22 28 28 H 1.48493 * 109.47126 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.46728 * 299.99823 * 26 24 22 30 30 H 1.08993 * 109.47384 * 300.00260 * 1 2 3 31 31 H 1.08999 * 109.46932 * 60.00420 * 1 2 3 32 32 H 1.09003 * 109.47421 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47384 * 239.99740 * 2 1 3 34 34 H 1.09004 * 109.46862 * 120.00064 * 2 1 3 35 35 H 1.09005 * 109.47044 * 304.99897 * 5 3 2 36 36 H 1.08995 * 109.46968 * 64.99776 * 5 3 2 37 37 H 0.97001 * 119.99664 * 0.02562 * 6 5 3 38 38 H 1.09006 * 109.49896 * 182.18437 * 12 11 9 39 39 H 1.09000 * 109.50719 * 62.01230 * 12 11 9 40 40 H 1.09002 * 109.52313 * 295.41624 * 13 12 11 41 41 H 1.08997 * 109.52347 * 175.22006 * 13 12 11 42 42 H 0.96996 * 119.99867 * 95.00240 * 21 3 2 43 43 H 0.96997 * 119.99932 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 7 4.0630 2.8167 -0.0058 7 6 5.3856 3.0630 -0.0866 8 8 6.1700 2.1417 -0.1692 9 6 5.8898 4.4832 -0.0743 10 1 5.2035 5.1182 -0.6345 11 8 7.1875 4.5350 -0.6747 12 6 8.1720 3.7658 0.0251 13 6 8.2654 4.2633 1.4705 14 8 6.9671 4.2116 2.0695 15 6 5.9832 4.9805 1.3711 16 1 6.2700 6.0322 1.3766 17 6 4.6252 4.8172 2.0568 18 9 4.3313 3.4561 2.1910 19 9 4.6673 5.4123 3.3223 20 9 3.6355 5.4342 1.2841 21 7 1.6523 2.0975 1.2518 22 6 0.4155 2.6735 1.3687 23 1 -0.2740 2.6452 0.5380 24 6 0.0485 3.2946 2.5546 25 7 0.8890 3.3295 3.5669 26 14 -1.6390 4.0797 2.7144 27 1 -2.6867 3.0472 2.5108 28 1 -1.7837 4.6708 4.0689 29 1 -1.7883 5.1448 1.6903 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.9954 0.8312 0.6661 36 1 3.8499 1.0377 -1.0958 37 1 3.4410 3.5482 0.1316 38 1 9.1395 3.8822 -0.4634 39 1 7.8841 2.7146 0.0195 40 1 8.6300 5.2905 1.4794 41 1 8.9507 3.6275 2.0310 42 1 2.2718 2.1232 1.9978 43 1 0.6323 3.7632 4.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318540993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = -240.542310 kcal Electronic energy + Delta-G solvation = -33658.217726 eV Core-core repulsion = 28711.301841 eV Total energy + Delta-G solvation = -4946.915885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.80665 -47.36281 -47.16146 -40.96556 -38.65393 -36.78104 -36.19784 -33.95009 -32.70008 -32.22475 -29.73602 -28.90040 -28.13021 -26.44819 -23.81548 -23.44261 -22.86216 -21.84126 -20.40972 -19.72645 -18.49441 -18.25515 -18.13834 -17.49682 -16.99042 -16.80663 -16.61353 -15.89996 -15.35537 -15.26647 -14.86291 -14.56154 -14.26919 -14.05670 -13.94920 -13.88516 -13.73442 -13.64539 -13.30870 -13.24427 -13.11578 -13.00507 -12.75352 -12.47343 -12.38604 -12.08044 -11.80045 -11.53466 -11.33367 -10.96028 -10.92769 -10.84605 -10.68600 -10.42304 -10.18027 -10.03150 -9.96612 -9.49553 -8.96002 -8.87813 -8.66241 -6.98418 -5.75257 -3.05050 2.35156 2.55813 3.07158 3.32951 3.42895 3.48116 3.49347 3.53387 3.77912 3.99975 4.30973 4.57913 4.60949 4.67930 4.71635 4.82684 4.92539 4.97407 5.13523 5.40391 5.47132 5.48263 5.58052 5.84802 5.93935 5.97367 5.98666 6.15251 6.44214 6.44785 6.51802 6.57811 6.59312 6.61417 6.84665 7.03445 7.26813 7.70177 7.72101 8.33536 8.41251 9.53456 10.08545 10.45131 11.45672 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.005077 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.640439 B = 5513.205741 C = 6910.076709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.701 5.701 7 C 0.493 3.507 8 O -0.531 6.531 9 C 0.043 3.957 10 H 0.145 0.855 11 O -0.343 6.343 12 C -0.012 4.012 13 C 0.030 3.970 14 O -0.349 6.349 15 C 0.020 3.980 16 H 0.119 0.881 17 C 0.467 3.533 18 F -0.147 7.147 19 F -0.171 7.171 20 F -0.168 7.168 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.008 4.008 25 N -0.924 5.924 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.409 0.591 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.388 0.612 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 3.288 -7.173 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.355 5.355 7 C 0.278 3.722 8 O -0.410 6.410 9 C -0.019 4.019 10 H 0.162 0.838 11 O -0.260 6.260 12 C -0.088 4.088 13 C -0.046 4.046 14 O -0.268 6.268 15 C -0.041 4.041 16 H 0.136 0.864 17 C 0.412 3.588 18 F -0.128 7.128 19 F -0.153 7.153 20 F -0.149 7.149 21 N -0.363 5.363 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.205 4.205 25 N -0.571 5.571 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.223 0.777 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.598 2.709 -7.230 15.637 hybrid contribution -1.248 0.840 0.657 1.642 sum 12.350 3.549 -6.573 14.434 Atomic orbital electron populations 1.21762 0.95680 0.99579 1.03275 1.22065 0.96998 0.98358 0.99964 1.20566 0.89703 0.92933 0.91644 0.92897 1.21713 0.95920 0.82165 1.01111 1.46245 1.06613 1.11618 1.71039 1.20799 0.83443 0.90730 0.77258 1.90488 1.54457 1.45605 1.50444 1.22701 0.88917 0.96308 0.93986 0.83811 1.88227 1.16061 1.70495 1.51204 1.23999 0.92518 1.00503 0.91736 1.23397 0.83893 1.02202 0.95115 1.88203 1.18612 1.69948 1.50015 1.23766 0.88795 0.99634 0.91860 0.86360 1.19763 0.85538 0.75932 0.77605 1.93344 1.93878 1.30072 1.95462 1.93213 1.96556 1.83762 1.41734 1.93212 1.64038 1.82942 1.74750 1.42484 1.16827 1.65752 1.11269 1.19125 0.91956 1.28022 0.97966 0.91060 1.24712 0.97825 1.01479 0.96440 1.69658 1.35006 1.48597 1.03872 0.86388 0.84514 0.79243 0.76720 1.21370 1.21841 1.21365 0.89592 0.94159 0.94945 0.93935 0.92522 0.91478 0.91741 0.75205 0.87570 0.86418 0.91869 0.86686 0.77741 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.30 5.61 -26.73 -0.15 -2.45 16 3 C 0.16 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.12 1.97 5.24 -4.05 -0.02 1.95 16 6 N -0.70 -11.85 3.37 -60.30 -0.20 -12.05 16 7 C 0.49 8.08 5.48 -10.98 -0.06 8.02 16 8 O -0.53 -9.70 13.50 -13.22 -0.18 -9.88 16 9 C 0.04 0.58 3.06 -27.80 -0.09 0.49 16 10 H 0.14 1.59 7.81 -51.93 -0.41 1.18 16 11 O -0.34 -4.43 10.62 -61.97 -0.66 -5.09 16 12 C -0.01 -0.13 6.61 37.23 0.25 0.11 16 13 C 0.03 0.31 7.05 37.23 0.26 0.58 16 14 O -0.35 -5.00 10.06 -48.72 -0.49 -5.49 16 15 C 0.02 0.28 2.64 -26.66 -0.07 0.21 16 16 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 17 C 0.47 7.90 2.54 37.16 0.09 7.99 16 18 F -0.15 -2.93 12.29 2.25 0.03 -2.91 16 19 F -0.17 -3.10 17.32 2.25 0.04 -3.06 16 20 F -0.17 -2.83 15.13 2.25 0.03 -2.80 16 21 N -0.72 -16.52 4.51 -53.42 -0.24 -16.76 16 22 C -0.24 -6.08 7.75 -15.06 -0.12 -6.20 16 23 H 0.07 1.77 7.32 -52.49 -0.38 1.38 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.92 -26.64 13.06 55.49 0.72 -25.91 16 26 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.09 1.82 5.99 -51.93 -0.31 1.51 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 7.17 5.76 -40.82 -0.23 6.94 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.12 1.66 5.03 -51.93 -0.26 1.40 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.39 9.81 6.92 -40.82 -0.28 9.52 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -30.61 350.64 -6.18 -36.79 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.66 Total: 14.28 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 0.17 Total: 10.97 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.28 Total: -54.73 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.33 Total: -20.46 kcal Atomic # 9 Polarization: -8.87 SS G_CDS: 0.10 Total: -8.76 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.61 -6.18 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318540993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.748 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds