Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29428 * 124.80026 * 2 1 4 4 C 1.30945 * 117.36126 * 180.02562 * 3 2 1 5 5 C 1.35670 * 114.18882 * 0.02562 * 4 3 2 6 6 C 1.46680 * 126.12576 * 180.02562 * 5 4 3 7 7 O 1.21686 * 120.00180 * 352.05078 * 6 5 4 8 8 N 1.34776 * 119.99799 * 172.05290 * 6 5 4 9 9 C 1.46504 * 120.00231 * 1.31201 * 8 6 5 10 10 C 1.46500 * 120.00070 * 181.31257 * 8 6 5 11 11 H 1.08998 * 109.47094 * 359.97438 * 10 8 6 12 12 C 1.53002 * 109.47166 * 239.99947 * 10 8 6 13 13 C 1.52996 * 109.47174 * 120.00243 * 10 8 6 14 14 N 1.46898 * 109.46940 * 304.99618 * 13 10 8 15 15 C 1.46900 * 110.99953 * 180.02562 * 14 13 10 16 16 C 1.50706 * 109.47040 * 180.02562 * 15 14 13 17 17 O 1.21289 * 119.99782 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99655 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99528 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00497 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00000 * 179.97438 * 19 18 16 22 22 N 1.31423 * 119.99892 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47448 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47130 * 120.00404 * 23 21 19 26 26 H 1.48509 * 109.46938 * 239.99920 * 23 21 19 27 27 S 1.70947 * 124.80406 * 180.31897 * 2 1 3 28 28 H 1.09004 * 109.47470 * 89.97746 * 1 2 3 29 29 H 1.09005 * 109.47008 * 209.97465 * 1 2 3 30 30 H 1.08999 * 109.47515 * 329.97436 * 1 2 3 31 31 H 1.07998 * 122.90608 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47308 * 83.63356 * 9 8 6 33 33 H 1.09007 * 109.46678 * 323.63765 * 9 8 6 34 34 H 1.08997 * 109.47435 * 203.64493 * 9 8 6 35 35 H 1.08993 * 109.47323 * 179.97438 * 12 10 8 36 36 H 1.09007 * 109.47109 * 299.99866 * 12 10 8 37 37 H 1.09004 * 109.47374 * 59.99223 * 12 10 8 38 38 H 1.08999 * 109.47913 * 65.00135 * 13 10 8 39 39 H 1.09008 * 109.47043 * 185.00184 * 13 10 8 40 40 H 1.00899 * 110.99995 * 56.04634 * 14 13 10 41 41 H 1.09002 * 109.46830 * 299.99849 * 15 14 13 42 42 H 1.08998 * 109.47853 * 59.99941 * 15 14 13 43 43 H 0.96998 * 120.00958 * 359.97438 * 18 16 15 44 44 H 0.96993 * 119.99500 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 3.9351 -0.4059 -0.0015 6 6 5.3188 -0.8925 -0.0018 7 8 6.2391 -0.1097 -0.1468 8 7 5.5709 -2.2067 0.1585 9 6 4.4620 -3.1530 0.3042 10 6 6.9539 -2.6891 0.1871 11 1 7.6350 -1.8471 0.0642 12 6 7.1690 -3.6888 -0.9510 13 6 7.2271 -3.3754 1.5270 14 7 6.9058 -2.4528 2.6241 15 6 7.1570 -3.0789 3.9290 16 6 6.8162 -2.1050 5.0274 17 8 6.4050 -0.9981 4.7503 18 7 6.9683 -2.4640 6.3175 19 6 6.6588 -1.5778 7.3167 20 1 6.2926 -0.5922 7.0701 21 6 6.8151 -1.9481 8.6468 22 7 7.2602 -3.1476 8.9470 23 14 6.3926 -0.7409 10.0083 24 1 5.9154 0.5320 9.4107 25 1 5.3250 -1.3156 10.8657 26 1 7.6012 -0.4797 10.8308 27 16 2.4827 -1.4036 -0.0078 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 4.2433 1.7164 -0.0002 32 1 4.0888 -3.4300 -0.6816 33 1 3.6607 -2.6879 0.8786 34 1 4.8113 -4.0449 0.8244 35 1 8.1981 -4.0474 -0.9301 36 1 6.4879 -4.5310 -0.8285 37 1 6.9743 -3.2000 -1.9057 38 1 6.6084 -4.2688 1.6106 39 1 8.2791 -3.6553 1.5840 40 1 5.9530 -2.1279 2.5560 41 1 6.5380 -3.9705 4.0294 42 1 8.2085 -3.3566 4.0025 43 1 7.2969 -3.3494 6.5391 44 1 7.3689 -3.4062 9.8755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319428833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = -13.897991 kcal Electronic energy + Delta-G solvation = -27228.901692 eV Core-core repulsion = 23308.716204 eV Total energy + Delta-G solvation = -3920.185488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47137 -39.56547 -38.25685 -36.89079 -34.72800 -33.80960 -32.76142 -31.72320 -31.18001 -28.78101 -27.61582 -27.38457 -25.08791 -24.58996 -23.32763 -22.59799 -20.31684 -19.21901 -18.90081 -18.75783 -17.88300 -16.85110 -16.63973 -16.32449 -15.85891 -15.35884 -15.11775 -14.89048 -14.49795 -14.38330 -14.12985 -13.90311 -13.62491 -13.55462 -13.45139 -13.16639 -13.06844 -12.81944 -12.66344 -12.57828 -12.42726 -11.91759 -11.73876 -11.63005 -11.60070 -11.43258 -11.10712 -10.98606 -10.33220 -10.21427 -10.13695 -9.76068 -9.55750 -9.50924 -9.18682 -8.80138 -8.41997 -8.04549 -7.94570 -6.41005 -3.81539 0.09486 0.99352 1.38795 2.34180 2.68473 3.12149 3.17109 3.27643 3.35617 3.88124 3.91776 4.05253 4.25158 4.41941 4.64068 4.74873 4.80599 4.91265 5.02012 5.08351 5.09897 5.13087 5.16570 5.19885 5.23610 5.26325 5.38239 5.45726 5.54337 5.59792 5.75880 5.82094 5.95305 5.96827 5.99254 6.26570 6.33272 7.07295 7.20017 7.48850 7.56614 7.63381 7.98213 8.07833 8.62586 9.19336 9.55314 10.07236 10.76910 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003018 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.485230 B = 9275.107919 C =11021.362290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.030 3.970 3 N -0.483 5.483 4 C 0.127 3.873 5 C -0.295 4.295 6 C 0.601 3.399 7 O -0.513 6.513 8 N -0.606 5.606 9 C 0.061 3.939 10 C 0.140 3.860 11 H 0.114 0.886 12 C -0.158 4.158 13 C 0.049 3.951 14 N -0.664 5.664 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.580 6.580 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 S 0.184 5.816 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.086 0.914 40 H 0.347 0.653 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 -6.122 -21.576 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.244 4.244 3 N -0.198 5.198 4 C -0.030 4.030 5 C -0.418 4.418 6 C 0.388 3.612 7 O -0.389 6.389 8 N -0.339 5.339 9 C -0.084 4.084 10 C 0.037 3.963 11 H 0.132 0.868 12 C -0.217 4.217 13 C -0.082 4.082 14 N -0.297 5.297 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.463 6.463 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 S 0.442 5.558 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.204 0.796 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.104 0.896 40 H 0.167 0.833 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.544 -5.276 -21.676 24.265 hybrid contribution -0.179 -0.049 1.157 1.172 sum -9.723 -5.325 -20.519 23.322 Atomic orbital electron populations 1.20503 0.85197 1.04546 1.03900 1.27966 1.02656 0.93712 1.00076 1.66302 1.04707 1.31818 1.16937 1.22181 0.90885 0.95564 0.94383 1.25699 0.97598 0.97898 1.20624 1.16696 0.86092 0.81962 0.76442 1.90852 1.44430 1.54550 1.49096 1.47631 1.07265 1.06224 1.72822 1.22041 0.89412 0.94585 1.02400 1.21250 0.82207 0.98668 0.94178 0.86761 1.22111 1.02598 0.98860 0.98136 1.22365 1.01724 0.93460 0.90653 1.59972 1.31906 1.37596 1.00229 1.21688 1.01762 0.95332 0.89400 1.19816 0.85081 0.88991 0.83575 1.90547 1.50579 1.22447 1.82764 1.41862 1.58035 1.16167 1.04089 1.19760 1.40658 0.97511 0.84787 0.87910 1.25255 0.97294 0.96959 0.98458 1.69624 1.46338 1.18770 1.19702 0.85808 0.78036 0.80281 0.80286 1.19205 1.20779 1.20706 1.84210 0.95634 1.09644 1.66359 0.89368 0.89873 0.89150 0.79563 0.91386 0.90759 0.89057 0.90882 0.92323 0.91985 0.95307 0.89587 0.83293 0.94085 0.89477 0.77504 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.15 16 2 C 0.03 0.31 7.38 -13.29 -0.10 0.21 16 3 N -0.48 -6.35 10.51 -11.50 -0.12 -6.47 16 4 C 0.13 1.74 11.10 -18.85 -0.21 1.54 16 5 C -0.29 -3.86 6.26 -37.09 -0.23 -4.09 16 6 C 0.60 8.83 7.64 -12.85 -0.10 8.73 16 7 O -0.51 -9.33 16.20 5.20 0.08 -9.24 16 8 N -0.61 -7.07 1.83 -175.48 -0.32 -7.39 16 9 C 0.06 0.51 7.98 59.85 0.48 0.98 16 10 C 0.14 1.57 2.94 -67.93 -0.20 1.37 16 11 H 0.11 1.60 6.90 -51.93 -0.36 1.24 16 12 C -0.16 -1.23 9.19 37.16 0.34 -0.89 16 13 C 0.05 0.57 5.00 -3.83 -0.02 0.56 16 14 N -0.66 -11.24 6.12 -115.05 -0.70 -11.95 16 15 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 16 C 0.44 10.70 7.82 -10.98 -0.09 10.61 16 17 O -0.58 -16.44 15.78 5.55 0.09 -16.36 16 18 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 20 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 23 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 S 0.18 1.69 18.11 -107.50 -1.95 -0.25 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 32 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 33 H 0.08 0.67 4.48 -22.82 -0.10 0.56 16 34 H 0.09 0.65 6.54 -51.93 -0.34 0.31 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.38 7.67 -51.92 -0.40 -0.02 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.03 0.29 6.87 -51.93 -0.36 -0.07 16 39 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.35 6.31 7.56 -39.29 -0.30 6.02 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -36.05 379.34 -7.48 -43.53 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -5.90 Total: 13.08 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -0.02 Total: 11.63 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.48 Total: -64.45 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.17 Total: -25.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.95 Total: -0.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.05 -7.48 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319428833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.628 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds