Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29428 * 124.80026 * 2 1 4 4 C 1.30945 * 117.36126 * 180.02562 * 3 2 1 5 5 C 1.35670 * 114.18882 * 0.02562 * 4 3 2 6 6 C 1.46680 * 126.12576 * 180.02562 * 5 4 3 7 7 O 1.21686 * 120.00180 * 352.05078 * 6 5 4 8 8 N 1.34776 * 119.99799 * 172.05290 * 6 5 4 9 9 C 1.46504 * 120.00231 * 1.31201 * 8 6 5 10 10 C 1.46500 * 120.00070 * 181.31257 * 8 6 5 11 11 H 1.08998 * 109.47094 * 359.97438 * 10 8 6 12 12 C 1.53002 * 109.47166 * 239.99947 * 10 8 6 13 13 C 1.52996 * 109.47174 * 120.00243 * 10 8 6 14 14 N 1.46898 * 109.46940 * 304.99618 * 13 10 8 15 15 C 1.46900 * 110.99953 * 180.02562 * 14 13 10 16 16 C 1.50706 * 109.47040 * 180.02562 * 15 14 13 17 17 O 1.21289 * 119.99782 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99655 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99528 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00497 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00000 * 179.97438 * 19 18 16 22 22 N 1.31423 * 119.99892 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47448 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47130 * 120.00404 * 23 21 19 26 26 H 1.48509 * 109.46938 * 239.99920 * 23 21 19 27 27 S 1.70947 * 124.80406 * 180.31897 * 2 1 3 28 28 H 1.09004 * 109.47470 * 89.97746 * 1 2 3 29 29 H 1.09005 * 109.47008 * 209.97465 * 1 2 3 30 30 H 1.08999 * 109.47515 * 329.97436 * 1 2 3 31 31 H 1.07998 * 122.90608 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47308 * 83.63356 * 9 8 6 33 33 H 1.09007 * 109.46678 * 323.63765 * 9 8 6 34 34 H 1.08997 * 109.47435 * 203.64493 * 9 8 6 35 35 H 1.08993 * 109.47323 * 179.97438 * 12 10 8 36 36 H 1.09007 * 109.47109 * 299.99866 * 12 10 8 37 37 H 1.09004 * 109.47374 * 59.99223 * 12 10 8 38 38 H 1.08999 * 109.47913 * 65.00135 * 13 10 8 39 39 H 1.09008 * 109.47043 * 185.00184 * 13 10 8 40 40 H 1.00899 * 110.99995 * 56.04634 * 14 13 10 41 41 H 1.09002 * 109.46830 * 299.99849 * 15 14 13 42 42 H 1.08998 * 109.47853 * 59.99941 * 15 14 13 43 43 H 0.96998 * 120.00958 * 359.97438 * 18 16 15 44 44 H 0.96993 * 119.99500 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 3.9351 -0.4059 -0.0015 6 6 5.3188 -0.8925 -0.0018 7 8 6.2391 -0.1097 -0.1468 8 7 5.5709 -2.2067 0.1585 9 6 4.4620 -3.1530 0.3042 10 6 6.9539 -2.6891 0.1871 11 1 7.6350 -1.8471 0.0642 12 6 7.1690 -3.6888 -0.9510 13 6 7.2271 -3.3754 1.5270 14 7 6.9058 -2.4528 2.6241 15 6 7.1570 -3.0789 3.9290 16 6 6.8162 -2.1050 5.0274 17 8 6.4050 -0.9981 4.7503 18 7 6.9683 -2.4640 6.3175 19 6 6.6588 -1.5778 7.3167 20 1 6.2926 -0.5922 7.0701 21 6 6.8151 -1.9481 8.6468 22 7 7.2602 -3.1476 8.9470 23 14 6.3926 -0.7409 10.0083 24 1 5.9154 0.5320 9.4107 25 1 5.3250 -1.3156 10.8657 26 1 7.6012 -0.4797 10.8308 27 16 2.4827 -1.4036 -0.0078 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 4.2433 1.7164 -0.0002 32 1 4.0888 -3.4300 -0.6816 33 1 3.6607 -2.6879 0.8786 34 1 4.8113 -4.0449 0.8244 35 1 8.1981 -4.0474 -0.9301 36 1 6.4879 -4.5310 -0.8285 37 1 6.9743 -3.2000 -1.9057 38 1 6.6084 -4.2688 1.6106 39 1 8.2791 -3.6553 1.5840 40 1 5.9530 -2.1279 2.5560 41 1 6.5380 -3.9705 4.0294 42 1 8.2085 -3.3566 4.0025 43 1 7.2969 -3.3494 6.5391 44 1 7.3689 -3.4062 9.8755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319428833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = -42.273047 kcal Electronic energy + Delta-G solvation = -27230.132127 eV Core-core repulsion = 23308.716204 eV Total energy + Delta-G solvation = -3921.415922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46118 -40.51646 -40.10698 -38.03582 -36.20444 -35.60516 -33.67361 -33.27258 -32.50380 -29.61386 -28.99345 -28.15932 -26.71651 -25.51429 -24.63715 -23.56220 -21.35586 -20.95137 -19.94127 -19.81277 -19.65830 -18.05183 -17.70598 -17.44237 -17.22262 -16.62793 -16.45201 -16.03157 -15.99264 -15.70326 -15.39921 -15.11053 -15.00981 -14.43510 -14.38261 -14.20813 -14.11013 -13.79883 -13.57363 -13.44544 -13.28042 -13.19050 -13.11616 -12.99797 -12.81418 -12.57409 -12.49032 -12.42051 -12.14327 -11.91001 -11.54462 -11.21387 -10.63804 -10.43316 -10.39614 -10.08954 -10.03923 -9.62358 -9.29127 -8.49582 -5.98214 -0.80567 0.15710 0.53676 1.33983 1.36815 1.39536 1.53693 1.78212 2.02304 2.10106 2.27139 2.88234 3.10967 3.17500 3.41992 3.52751 3.88904 3.95487 4.00474 4.14234 4.20504 4.23092 4.31674 4.43309 4.46545 4.53593 4.59449 4.60582 4.66413 4.68728 4.77420 4.80301 4.92403 5.08558 5.15836 5.27685 5.38466 5.47440 5.86707 6.09076 6.12117 6.32556 6.57979 6.61075 6.95200 7.10505 7.53353 8.09983 8.67980 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003018 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.485230 B = 9275.107919 C =11021.362290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.018 3.982 3 N -0.516 5.516 4 C 0.109 3.891 5 C -0.329 4.329 6 C 0.591 3.409 7 O -0.567 6.567 8 N -0.599 5.599 9 C 0.051 3.949 10 C 0.138 3.862 11 H 0.077 0.923 12 C -0.147 4.147 13 C 0.051 3.949 14 N -0.690 5.690 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.628 6.628 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.278 1.278 25 H -0.267 1.267 26 H -0.270 1.270 27 S 0.273 5.727 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.171 0.829 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.337 0.663 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.398 0.602 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 -9.484 -21.822 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.255 4.255 3 N -0.231 5.231 4 C -0.049 4.049 5 C -0.453 4.453 6 C 0.379 3.621 7 O -0.448 6.448 8 N -0.332 5.332 9 C -0.092 4.092 10 C 0.035 3.965 11 H 0.095 0.905 12 C -0.205 4.205 13 C -0.078 4.078 14 N -0.322 5.322 15 C -0.065 4.065 16 C 0.221 3.779 17 O -0.515 6.515 18 N -0.208 5.208 19 C -0.465 4.465 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.814 3.186 24 H -0.202 1.202 25 H -0.192 1.192 26 H -0.195 1.195 27 S 0.531 5.469 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.188 0.812 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.155 0.845 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.232 0.768 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.874 -8.738 -21.927 25.989 hybrid contribution 0.192 0.923 1.213 1.536 sum -10.683 -7.816 -20.714 24.582 Atomic orbital electron populations 1.20738 0.82397 1.05601 1.05580 1.28767 1.04520 0.94035 0.98166 1.66335 1.04431 1.33524 1.18838 1.22119 0.91472 0.95906 0.95453 1.25737 0.98880 0.98950 1.21692 1.17042 0.86258 0.82719 0.76054 1.90805 1.46077 1.56082 1.51853 1.47739 1.08480 1.05701 1.71241 1.22348 0.88255 0.94288 1.04335 1.21287 0.81383 0.98287 0.95527 0.90464 1.22037 1.04172 0.98294 0.96026 1.22498 1.03129 0.93458 0.88746 1.59946 1.31417 1.39854 1.01028 1.21551 1.03366 0.94093 0.87510 1.20998 0.83135 0.89404 0.84325 1.90519 1.52337 1.25025 1.83574 1.41906 1.58406 1.16043 1.04454 1.19658 1.43019 0.97359 0.86436 0.90845 1.25997 0.96465 0.98655 0.99859 1.69668 1.45865 1.19602 1.20708 0.84909 0.78429 0.77743 0.77476 1.20244 1.19180 1.19483 1.83682 0.91835 1.06911 1.64448 0.87185 0.87365 0.89524 0.81171 0.88440 0.91460 0.86795 0.89474 0.89855 0.92468 0.92016 0.88295 0.84470 0.90874 0.87507 0.76815 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.46 71.24 0.75 -0.15 16 2 C 0.02 0.35 7.38 88.46 0.65 1.00 16 3 N -0.52 -14.10 10.51 -190.30 -2.00 -16.10 16 4 C 0.11 3.26 11.10 84.23 0.93 4.20 16 5 C -0.33 -8.97 6.26 23.88 0.15 -8.82 16 6 C 0.59 18.26 7.64 86.45 0.66 18.92 16 7 O -0.57 -22.57 16.20 -4.30 -0.07 -22.64 16 8 N -0.60 -13.53 1.83 -827.31 -1.52 -15.05 16 9 C 0.05 0.70 7.98 127.77 1.02 1.72 16 10 C 0.14 2.95 2.94 44.99 0.13 3.08 16 11 H 0.08 2.26 6.90 -2.39 -0.02 2.24 16 12 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 13 C 0.05 1.07 5.00 86.30 0.43 1.51 16 14 N -0.69 -22.77 6.12 -517.92 -3.17 -25.94 16 15 C 0.07 2.29 6.17 85.56 0.53 2.82 16 16 C 0.43 21.34 7.82 87.66 0.69 22.02 16 17 O -0.63 -37.00 15.78 -3.06 -0.05 -37.05 16 18 N -0.57 -29.78 5.29 -306.98 -1.62 -31.41 16 19 C -0.34 -19.51 9.68 84.04 0.81 -18.70 16 20 H 0.07 4.64 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 22 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 23 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 S 0.27 4.54 18.11 -56.49 -1.02 3.51 16 28 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.11 0.62 8.14 -2.38 -0.02 0.61 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.17 5.31 8.06 -2.91 -0.02 5.29 16 32 H 0.10 0.80 7.88 -2.39 -0.02 0.78 16 33 H 0.07 1.03 4.48 -20.89 -0.09 0.94 16 34 H 0.11 1.08 6.54 -2.39 -0.02 1.07 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.67 7.67 -2.38 -0.02 0.65 16 37 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.94 6.87 -2.39 -0.02 0.93 16 39 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.34 12.22 7.56 -89.69 -0.68 11.54 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 44 H 0.28 13.99 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -84.04 379.34 0.31 -83.73 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.44 Total: 38.15 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 7.88 Total: 26.34 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -8.02 Total: -137.75 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: -0.12 Total: -59.69 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.02 Total: 3.51 kcal Total: -84.04 0.31 -83.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319428833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.459 kcal (2) G-P(sol) polarization free energy of solvation -84.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds