Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47042 * 269.97308 * 6 5 4 8 8 C 1.46898 * 111.00068 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47511 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.46863 * 295.00583 * 9 8 7 11 11 N 1.46504 * 109.47063 * 54.99988 * 9 8 7 12 12 C 1.34771 * 120.00256 * 205.00194 * 11 9 8 13 13 O 1.21283 * 119.99864 * 0.02562 * 12 11 9 14 14 C 1.50702 * 120.00192 * 180.02562 * 12 11 9 15 15 S 1.80997 * 109.47105 * 179.97438 * 14 12 11 16 16 C 1.76204 * 99.99780 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00055 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00033 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46577 * 89.99952 * 20 18 16 22 22 H 1.48493 * 109.47164 * 209.99915 * 20 18 16 23 23 H 1.48493 * 109.46946 * 330.00470 * 20 18 16 24 24 C 1.52993 * 109.47549 * 175.00349 * 9 8 7 25 25 C 1.52999 * 117.49951 * 248.74848 * 24 9 8 26 26 C 1.52997 * 117.50295 * 180.08848 * 24 9 8 27 27 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 28 28 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 31 31 H 1.09002 * 109.46756 * 29.97587 * 6 5 4 32 32 H 1.09001 * 109.47141 * 149.96983 * 6 5 4 33 33 H 1.00897 * 111.00742 * 303.95583 * 7 6 5 34 34 H 1.09000 * 109.47688 * 300.00506 * 8 7 6 35 35 H 1.09008 * 109.46587 * 60.00406 * 8 7 6 36 36 H 0.97005 * 119.99511 * 25.00890 * 11 9 8 37 37 H 1.08999 * 109.47069 * 300.00493 * 14 12 11 38 38 H 1.09004 * 109.46635 * 60.00121 * 14 12 11 39 39 H 0.97003 * 120.00525 * 179.97438 * 19 18 16 40 40 H 1.09004 * 115.54994 * 34.41784 * 24 9 8 41 41 H 1.08992 * 117.50139 * 359.97438 * 25 24 9 42 42 H 1.09000 * 117.49711 * 145.01904 * 25 24 9 43 43 H 1.09005 * 117.49869 * 214.98264 * 26 24 9 44 44 H 1.09005 * 117.49667 * 359.96934 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 7 5.2084 -1.7024 -1.3847 8 6 6.4434 -2.4969 -1.4240 9 6 6.8397 -2.7519 -2.8795 10 1 6.0824 -3.3722 -3.3590 11 7 6.9445 -1.4740 -3.5882 12 6 6.7802 -1.4293 -4.9251 13 8 6.5452 -2.4471 -5.5415 14 6 6.8885 -0.1149 -5.6542 15 16 6.6216 -0.3829 -7.4242 16 6 6.8001 1.2679 -8.0139 17 1 7.0119 2.0689 -7.3211 18 6 6.6684 1.5389 -9.3688 19 7 6.4107 0.5627 -10.2132 20 14 6.8568 3.2892 -9.9939 21 1 8.2798 3.5423 -10.3351 22 1 6.0168 3.4757 -11.2041 23 1 6.4239 4.2407 -8.9393 24 6 8.1895 -3.4709 -2.9222 25 6 9.3881 -2.6917 -3.4674 26 6 8.7634 -3.8155 -4.2980 27 7 2.3030 -1.0840 0.0048 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.5844 -0.8852 0.5139 32 1 4.6208 -2.3818 0.5144 33 1 4.4696 -2.1562 -1.9008 34 1 7.2421 -1.9522 -0.9204 35 1 6.2789 -3.4492 -0.9196 36 1 7.1322 -0.6600 -3.0951 37 1 6.1356 0.5751 -5.2731 38 1 7.8811 0.3072 -5.4966 39 1 6.3182 0.7521 -11.1601 40 1 8.3736 -4.1738 -2.1097 41 1 9.2149 -1.6671 -3.7961 42 1 10.3607 -2.8823 -3.0138 43 1 9.3252 -4.7450 -4.3905 44 1 8.1789 -3.5304 -5.1728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322959034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = 63.358018 kcal Electronic energy + Delta-G solvation = -26562.061807 eV Core-core repulsion = 22645.226391 eV Total energy + Delta-G solvation = -3916.835416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.86162 -39.96723 -37.49186 -36.63865 -36.18146 -33.94192 -32.89043 -32.40008 -30.41606 -29.48438 -28.42497 -26.34332 -25.43315 -23.82362 -22.88876 -22.11162 -21.82531 -20.86305 -19.79150 -18.41490 -17.94839 -17.71842 -16.76090 -16.42871 -16.18888 -15.55427 -15.30853 -15.01141 -14.77621 -14.48631 -14.32741 -13.97095 -13.91261 -13.71344 -13.31207 -13.10223 -12.93810 -12.84479 -12.51748 -12.30054 -11.99756 -11.88617 -11.75441 -11.67663 -11.36373 -11.20626 -11.03299 -10.99297 -10.73596 -10.32094 -10.22506 -9.93948 -9.77939 -9.32531 -9.04850 -9.03820 -8.72365 -8.20235 -6.46128 -6.19107 -3.88848 0.81199 1.88323 2.44947 3.06465 3.12632 3.24383 3.25507 3.30053 3.34637 3.63489 3.72222 3.76576 4.00450 4.23453 4.44619 4.50563 4.73307 4.82550 4.90810 4.96806 5.04580 5.06778 5.08711 5.15261 5.16212 5.18136 5.25141 5.28336 5.45911 5.55627 5.64127 5.68487 5.79944 5.88657 5.94757 5.98120 6.18952 6.24150 6.27678 6.55996 6.67509 6.80528 7.62593 7.82314 7.87835 8.38148 8.69398 9.26564 10.88281 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008202 B = 0.002946 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.951619 B = 9503.194267 C =12190.708432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.382 5.382 4 O 0.090 5.910 5 C 0.187 3.813 6 C 0.153 3.847 7 N -0.682 5.682 8 C 0.057 3.943 9 C 0.181 3.819 10 H 0.090 0.910 11 N -0.719 5.719 12 C 0.535 3.465 13 O -0.517 6.517 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.917 3.083 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.174 4.174 25 C -0.174 4.174 26 C -0.180 4.180 27 N -0.480 5.480 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.355 0.645 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.402 0.598 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.268 0.732 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -5.934 25.634 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 N -0.089 5.089 4 O 0.030 5.970 5 C -0.034 4.034 6 C 0.022 3.978 7 N -0.316 5.316 8 C -0.072 4.072 9 C 0.075 3.925 10 H 0.108 0.892 11 N -0.373 5.373 12 C 0.322 3.678 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.194 4.194 25 C -0.211 4.211 26 C -0.217 4.217 27 N -0.215 5.215 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.174 0.826 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.237 0.763 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.148 -6.563 24.369 25.432 hybrid contribution 0.327 1.791 0.791 1.985 sum -2.821 -4.772 25.160 25.763 Atomic orbital electron populations 1.20154 0.82887 1.04557 1.04566 1.25897 1.00650 0.83419 1.00649 1.74679 0.89427 1.23916 1.20905 1.85313 1.22199 1.24589 1.64854 1.28572 0.96499 0.82449 0.95899 1.20321 0.88274 0.96693 0.92493 1.60350 1.07746 1.52804 1.10682 1.22258 0.91790 0.96400 0.96742 1.20309 0.95765 0.85891 0.90578 0.89233 1.45871 1.74308 1.09820 1.07254 1.20244 0.75215 0.90828 0.81557 1.90632 1.46531 1.35526 1.66578 1.23525 1.04836 0.97129 1.04899 1.85337 1.93251 1.12986 0.91720 1.22874 1.56283 0.93630 0.95471 0.90989 1.24979 0.94599 0.98262 0.95722 1.70015 1.45459 1.31603 1.03286 0.86187 0.78255 0.82825 0.78368 1.20285 1.20783 1.19688 1.22644 0.94322 1.03531 0.98890 1.22918 0.95772 0.98012 1.04388 1.23388 1.03450 0.99048 0.95783 1.71881 0.99782 1.29682 1.20151 0.89106 0.89068 0.89497 0.86984 0.90180 0.82577 0.89485 0.93003 0.76330 0.89312 0.89451 0.92236 0.87692 0.88514 0.89510 0.89582 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.17 1.81 8.22 -156.37 -1.28 0.53 16 3 N -0.38 -4.71 12.16 30.90 0.38 -4.33 16 4 O 0.09 1.01 11.31 18.11 0.20 1.21 16 5 C 0.19 1.75 8.03 -13.05 -0.10 1.65 16 6 C 0.15 0.88 6.31 -4.98 -0.03 0.84 16 7 N -0.68 -4.98 6.21 -115.06 -0.71 -5.69 16 8 C 0.06 0.36 5.23 -3.83 -0.02 0.34 16 9 C 0.18 1.81 2.67 -67.93 -0.18 1.63 16 10 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 11 N -0.72 -8.73 3.34 -53.81 -0.18 -8.91 16 12 C 0.53 9.36 6.68 -10.99 -0.07 9.29 16 13 O -0.52 -10.85 12.89 5.55 0.07 -10.78 16 14 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 16 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 20 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.17 -1.74 5.70 -90.63 -0.52 -2.26 16 25 C -0.17 -1.95 9.74 -26.70 -0.26 -2.21 16 26 C -0.18 -2.37 9.82 -26.70 -0.26 -2.63 16 27 N -0.48 -5.19 11.55 -9.87 -0.11 -5.30 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.35 3.07 8.72 -39.29 -0.34 2.72 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.11 0.83 8.11 -51.93 -0.42 0.41 16 41 H 0.10 1.20 6.67 -51.93 -0.35 0.86 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.12 2.13 5.02 -51.93 -0.26 1.87 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -35.45 386.57 -9.28 -44.73 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.31 Total: 4.75 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.94 Total: -8.72 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.10 Total: -49.79 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.28 Total: -9.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.45 -9.28 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322959034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.091 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds