Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47042 * 269.97308 * 6 5 4 8 8 C 1.46898 * 111.00068 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47511 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.46863 * 295.00583 * 9 8 7 11 11 N 1.46504 * 109.47063 * 54.99988 * 9 8 7 12 12 C 1.34771 * 120.00256 * 205.00194 * 11 9 8 13 13 O 1.21283 * 119.99864 * 0.02562 * 12 11 9 14 14 C 1.50702 * 120.00192 * 180.02562 * 12 11 9 15 15 S 1.80997 * 109.47105 * 179.97438 * 14 12 11 16 16 C 1.76204 * 99.99780 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00055 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00033 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46577 * 89.99952 * 20 18 16 22 22 H 1.48493 * 109.47164 * 209.99915 * 20 18 16 23 23 H 1.48493 * 109.46946 * 330.00470 * 20 18 16 24 24 C 1.52993 * 109.47549 * 175.00349 * 9 8 7 25 25 C 1.52999 * 117.49951 * 248.74848 * 24 9 8 26 26 C 1.52997 * 117.50295 * 180.08848 * 24 9 8 27 27 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 28 28 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 31 31 H 1.09002 * 109.46756 * 29.97587 * 6 5 4 32 32 H 1.09001 * 109.47141 * 149.96983 * 6 5 4 33 33 H 1.00897 * 111.00742 * 303.95583 * 7 6 5 34 34 H 1.09000 * 109.47688 * 300.00506 * 8 7 6 35 35 H 1.09008 * 109.46587 * 60.00406 * 8 7 6 36 36 H 0.97005 * 119.99511 * 25.00890 * 11 9 8 37 37 H 1.08999 * 109.47069 * 300.00493 * 14 12 11 38 38 H 1.09004 * 109.46635 * 60.00121 * 14 12 11 39 39 H 0.97003 * 120.00525 * 179.97438 * 19 18 16 40 40 H 1.09004 * 115.54994 * 34.41784 * 24 9 8 41 41 H 1.08992 * 117.50139 * 359.97438 * 25 24 9 42 42 H 1.09000 * 117.49711 * 145.01904 * 25 24 9 43 43 H 1.09005 * 117.49869 * 214.98264 * 26 24 9 44 44 H 1.09005 * 117.49667 * 359.96934 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 7 5.2084 -1.7024 -1.3847 8 6 6.4434 -2.4969 -1.4240 9 6 6.8397 -2.7519 -2.8795 10 1 6.0824 -3.3722 -3.3590 11 7 6.9445 -1.4740 -3.5882 12 6 6.7802 -1.4293 -4.9251 13 8 6.5452 -2.4471 -5.5415 14 6 6.8885 -0.1149 -5.6542 15 16 6.6216 -0.3829 -7.4242 16 6 6.8001 1.2679 -8.0139 17 1 7.0119 2.0689 -7.3211 18 6 6.6684 1.5389 -9.3688 19 7 6.4107 0.5627 -10.2132 20 14 6.8568 3.2892 -9.9939 21 1 8.2798 3.5423 -10.3351 22 1 6.0168 3.4757 -11.2041 23 1 6.4239 4.2407 -8.9393 24 6 8.1895 -3.4709 -2.9222 25 6 9.3881 -2.6917 -3.4674 26 6 8.7634 -3.8155 -4.2980 27 7 2.3030 -1.0840 0.0048 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.5844 -0.8852 0.5139 32 1 4.6208 -2.3818 0.5144 33 1 4.4696 -2.1562 -1.9008 34 1 7.2421 -1.9522 -0.9204 35 1 6.2789 -3.4492 -0.9196 36 1 7.1322 -0.6600 -3.0951 37 1 6.1356 0.5751 -5.2731 38 1 7.8811 0.3072 -5.4966 39 1 6.3182 0.7521 -11.1601 40 1 8.3736 -4.1738 -2.1097 41 1 9.2149 -1.6671 -3.7961 42 1 10.3607 -2.8823 -3.0138 43 1 9.3252 -4.7450 -4.3905 44 1 8.1789 -3.5304 -5.1728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322959034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = 35.865906 kcal Electronic energy + Delta-G solvation = -26563.253955 eV Core-core repulsion = 22645.226391 eV Total energy + Delta-G solvation = -3918.027563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.63808 -41.12592 -38.47692 -37.42531 -36.90854 -34.92130 -34.58448 -33.78320 -31.51252 -30.21126 -29.55422 -27.67439 -27.03181 -24.58073 -23.56871 -23.02776 -22.49795 -22.08139 -20.81081 -19.80901 -19.20827 -18.61162 -17.79366 -17.59269 -17.29663 -16.88212 -16.33470 -16.16729 -15.88161 -15.64660 -15.49737 -15.00032 -14.75139 -14.53747 -14.49250 -14.41570 -13.99010 -13.51674 -13.50082 -13.33437 -13.16314 -12.92572 -12.90019 -12.76712 -12.62223 -12.53085 -12.40436 -12.19361 -12.11872 -11.71566 -11.24076 -11.14365 -11.02639 -10.83804 -10.71820 -10.26202 -9.87626 -9.54472 -8.64383 -8.34871 -6.11667 0.08162 1.12832 1.28233 1.41133 1.47234 1.58607 1.72155 1.82016 2.26769 2.38233 2.62064 2.95090 2.99043 3.05518 3.17509 3.35440 3.78198 3.90117 4.03075 4.08862 4.16117 4.29172 4.31434 4.35219 4.37705 4.43120 4.53151 4.53510 4.55493 4.60821 4.74373 4.77494 4.88715 4.91228 5.02876 5.07388 5.09710 5.31902 5.41373 5.47755 5.64386 5.81523 6.12511 6.19487 6.66649 7.06614 7.12746 7.40306 8.74225 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008202 B = 0.002946 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.951619 B = 9503.194267 C =12190.708432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.157 3.843 3 N -0.412 5.412 4 O 0.075 5.925 5 C 0.194 3.806 6 C 0.157 3.843 7 N -0.697 5.697 8 C 0.070 3.930 9 C 0.176 3.824 10 H 0.065 0.935 11 N -0.692 5.692 12 C 0.537 3.463 13 O -0.557 6.557 14 C -0.130 4.130 15 S -0.145 6.145 16 C -0.547 4.547 17 H 0.079 0.921 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.147 4.147 25 C -0.168 4.168 26 C -0.215 4.215 27 N -0.501 5.501 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.345 0.655 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.271 0.729 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 -5.262 28.721 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 N -0.123 5.123 4 O 0.019 5.981 5 C -0.027 4.027 6 C 0.027 3.973 7 N -0.330 5.330 8 C -0.059 4.059 9 C 0.071 3.929 10 H 0.083 0.917 11 N -0.345 5.345 12 C 0.323 3.677 13 O -0.436 6.436 14 C -0.282 4.282 15 S 0.082 5.918 16 C -0.695 4.695 17 H 0.097 0.903 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.818 3.182 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.166 4.166 25 C -0.205 4.205 26 C -0.252 4.252 27 N -0.236 5.236 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.163 0.837 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.159 0.841 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.113 0.887 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.197 -5.888 27.520 28.229 hybrid contribution 0.050 1.491 -0.080 1.494 sum -2.146 -4.397 27.441 27.873 Atomic orbital electron populations 1.20327 0.80855 1.05817 1.05205 1.26570 1.02082 0.83224 0.99625 1.74664 0.90000 1.24980 1.22653 1.85265 1.21922 1.25559 1.65357 1.29359 0.97398 0.82001 0.93977 1.20606 0.87428 0.97399 0.91873 1.60339 1.07841 1.53156 1.11672 1.22214 0.91888 0.98181 0.93608 1.20538 0.95508 0.84191 0.92655 0.91668 1.45618 1.72070 1.11615 1.05232 1.19833 0.75579 0.89124 0.83203 1.90640 1.48744 1.36341 1.67838 1.23370 1.05944 0.99144 0.99723 1.85475 1.93731 1.14117 0.98503 1.23205 1.56294 0.93825 0.96179 0.90284 1.26097 0.93876 1.03228 0.95873 1.70176 1.46565 1.34280 1.03703 0.84987 0.78640 0.76703 0.77871 1.19179 1.20225 1.18409 1.22751 0.93388 1.02876 0.97579 1.22940 0.97374 0.96538 1.03614 1.23256 1.05211 1.00526 0.96174 1.71907 1.00522 1.29936 1.21233 0.88641 0.87639 0.88410 0.84242 0.87970 0.83742 0.87035 0.90225 0.74776 0.88271 0.87861 0.92013 0.84071 0.89984 0.87289 0.88719 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.24 0.75 -0.10 16 2 C 0.16 3.34 8.22 138.47 1.14 4.48 16 3 N -0.41 -10.04 12.16 -60.32 -0.73 -10.78 16 4 O 0.08 1.63 11.31 74.86 0.85 2.48 16 5 C 0.19 3.30 8.03 88.38 0.71 4.01 16 6 C 0.16 1.25 6.31 85.56 0.54 1.79 16 7 N -0.70 -8.08 6.21 -517.93 -3.22 -11.29 16 8 C 0.07 0.57 5.23 86.30 0.45 1.02 16 9 C 0.18 3.15 2.67 44.99 0.12 3.27 16 10 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 11 N -0.69 -15.86 3.34 -442.54 -1.48 -17.34 16 12 C 0.54 19.05 6.68 87.66 0.59 19.64 16 13 O -0.56 -24.51 12.89 -3.04 -0.04 -24.55 16 14 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 15 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 16 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 17 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 18 C 0.01 0.81 5.49 84.86 0.47 1.28 16 19 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 20 Si 1.00 44.45 29.55 68.60 2.03 46.47 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 C -0.15 -2.53 5.70 -10.80 -0.06 -2.59 16 25 C -0.17 -3.42 9.74 30.62 0.30 -3.12 16 26 C -0.21 -5.61 9.82 30.62 0.30 -5.31 16 27 N -0.50 -10.30 11.55 -303.19 -3.50 -13.80 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.34 5.33 8.72 -89.70 -0.78 4.54 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.42 7.52 8.60 -92.70 -0.80 6.72 16 37 H 0.10 3.77 8.14 -2.40 -0.02 3.75 16 38 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.14 1.51 8.11 -2.38 -0.02 1.49 16 41 H 0.08 1.91 6.67 -2.39 -0.02 1.90 16 42 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.08 2.89 5.02 -2.38 -0.01 2.88 16 Total: -1.00 -82.83 386.57 -1.12 -83.95 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.53 Total: 22.24 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 6.38 Total: -11.69 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -8.64 Total: -109.57 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.81 Total: -22.08 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Total: -82.83 -1.12 -83.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322959034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.815 kcal (2) G-P(sol) polarization free energy of solvation -82.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds