Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47410 * 2 1 4 4 N 1.29942 * 126.28977 * 89.96937 * 3 2 1 5 5 O 1.21305 * 110.25255 * 180.02562 * 4 3 2 6 6 C 1.33642 * 109.81068 * 0.02562 * 5 4 3 7 7 C 1.50696 * 126.55302 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.46835 * 270.02330 * 7 6 5 9 9 C 1.47956 * 111.00051 * 70.63832 * 8 7 6 10 10 C 1.53941 * 86.17838 * 137.58133 * 9 8 7 11 11 C 1.47959 * 111.00104 * 169.99946 * 8 7 6 12 12 H 1.09009 * 113.85537 * 336.74690 * 11 8 7 13 13 C 1.52995 * 113.76038 * 108.09341 * 11 8 7 14 14 N 1.46499 * 109.47595 * 301.06831 * 13 11 8 15 15 C 1.34778 * 120.00278 * 179.97438 * 14 13 11 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00123 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00074 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99873 * 23 21 19 27 27 N 1.31136 * 106.89274 * 0.22376 * 6 5 4 28 28 H 1.09000 * 109.47335 * 59.99763 * 1 2 3 29 29 H 1.08997 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47303 * 299.99828 * 1 2 3 31 31 H 1.09000 * 109.47182 * 239.99398 * 2 1 3 32 32 H 1.09003 * 109.47125 * 119.99748 * 2 1 3 33 33 H 1.08999 * 109.47619 * 150.02368 * 7 6 5 34 34 H 1.09001 * 109.47064 * 30.01845 * 7 6 5 35 35 H 1.08998 * 113.76099 * 23.26282 * 9 8 7 36 36 H 1.09003 * 113.85754 * 251.91254 * 9 8 7 37 37 H 1.08997 * 113.73050 * 221.91788 * 10 9 8 38 38 H 1.09004 * 113.82747 * 90.65262 * 10 9 8 39 39 H 1.09008 * 109.47218 * 181.06663 * 13 11 8 40 40 H 1.09007 * 109.47175 * 61.07012 * 13 11 8 41 41 H 0.97000 * 119.99972 * 359.97438 * 14 13 11 42 42 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 43 43 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 44 44 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2882 2.1461 1.0474 5 8 2.6766 3.2453 0.7123 6 6 2.7057 3.3283 -0.6213 7 6 3.1272 4.5232 -1.4372 8 7 1.9580 5.3725 -1.7016 9 6 1.5068 6.0527 -0.4675 10 6 1.3313 7.3052 -1.3451 11 6 2.3656 6.6675 -2.2899 12 1 3.3952 6.9481 -2.0677 13 6 2.0155 6.8083 -3.7726 14 7 2.6665 5.7379 -4.5320 15 6 2.4988 5.6608 -5.8671 16 8 1.8094 6.4778 -6.4399 17 6 3.1680 4.5593 -6.6482 18 16 2.7539 4.7261 -8.4022 19 6 3.6421 3.3530 -9.0582 20 1 4.2145 2.7159 -8.4002 21 6 3.6012 3.0865 -10.4198 22 7 2.9033 3.8627 -11.2217 23 14 4.5366 1.6262 -11.1141 24 1 3.6602 0.4274 -11.1054 25 1 4.9548 1.9235 -12.5077 26 1 5.7384 1.3668 -10.2813 27 7 2.2922 2.1731 -1.0841 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5525 4.1860 -2.3824 34 1 3.8740 5.0944 -0.8858 35 1 2.2852 6.1520 0.2889 36 1 0.5713 5.6630 -0.0662 37 1 1.6771 8.2243 -0.8720 38 1 0.3375 7.4006 -1.7827 39 1 2.3621 7.7753 -4.1376 40 1 0.9351 6.7383 -3.8991 41 1 3.2182 5.0847 -4.0740 42 1 2.8214 3.5926 -6.2830 43 1 4.2484 4.6292 -6.5220 44 1 2.8750 3.6766 -12.1732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323181082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = 64.698532 kcal Electronic energy + Delta-G solvation = -26491.788168 eV Core-core repulsion = 22575.010881 eV Total energy + Delta-G solvation = -3916.777287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.91225 -40.76793 -38.85082 -36.68223 -34.70168 -34.19422 -32.43657 -32.39761 -30.66709 -29.94693 -27.67569 -25.87752 -25.45530 -25.42304 -23.64281 -23.21754 -21.33842 -20.48268 -20.00958 -18.49968 -17.90969 -17.80238 -16.76243 -16.49284 -16.27384 -15.85275 -15.27856 -15.07473 -14.89211 -14.77625 -14.51266 -13.95750 -13.91649 -13.84539 -13.35174 -13.18739 -12.94929 -12.60234 -12.51542 -12.26877 -12.12965 -12.07722 -11.78040 -11.69821 -11.60502 -11.37576 -11.28166 -11.19418 -11.03839 -10.99379 -10.73216 -10.26619 -9.78802 -9.49423 -9.30809 -9.04100 -8.83553 -8.19996 -6.46281 -6.18842 -3.88817 0.76340 1.89674 2.35458 2.98854 3.15551 3.21670 3.24605 3.26680 3.31395 3.39364 3.65017 3.74619 4.01877 4.22557 4.23511 4.38683 4.52754 4.66101 4.72597 4.74396 4.77007 4.80817 4.86981 5.03204 5.16312 5.16532 5.24431 5.28922 5.39876 5.42686 5.46626 5.53605 5.60737 5.66901 5.69739 5.75301 5.79669 5.87243 5.94357 6.18930 6.36752 6.64352 7.62632 7.72516 7.84388 8.38319 8.65661 9.26598 10.88622 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.002608 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.936473 B =10734.246903 C =12959.971035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C 0.173 3.827 4 N -0.385 5.385 5 O 0.074 5.926 6 C 0.187 3.813 7 C 0.111 3.889 8 N -0.464 5.464 9 C -0.005 4.005 10 C -0.131 4.131 11 C 0.023 3.977 12 H 0.094 0.906 13 C 0.141 3.859 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.458 5.458 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.393 0.607 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 1.120 28.277 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 C -0.100 4.100 4 N -0.093 5.093 5 O 0.016 5.984 6 C -0.035 4.035 7 C -0.019 4.019 8 N -0.189 5.189 9 C -0.133 4.133 10 C -0.169 4.169 11 C -0.087 4.087 12 H 0.112 0.888 13 C 0.017 3.983 14 N -0.388 5.388 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.191 5.191 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.227 0.773 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.046 1.487 27.282 27.399 hybrid contribution 2.392 -1.765 0.883 3.101 sum 0.345 -0.277 28.165 28.169 Atomic orbital electron populations 1.21736 0.93111 1.02960 1.02772 1.19965 0.96994 0.85536 1.04780 1.25968 1.00120 1.00534 0.83364 1.74621 1.17932 0.92828 1.23897 1.85276 1.60918 1.27388 1.24823 1.28417 0.96444 0.96685 0.81906 1.21217 0.94021 0.88320 0.98344 1.68802 1.24447 1.10477 1.15185 1.24012 1.02185 0.94372 0.92759 1.23326 1.00361 0.97320 0.95932 1.23870 0.99741 0.89240 0.95801 0.88834 1.21196 0.98810 0.91285 0.87030 1.45883 1.53429 1.31991 1.07524 1.20274 0.80629 0.85819 0.81361 1.90700 1.38257 1.41255 1.69026 1.23528 1.03069 0.99361 1.04459 1.85377 1.66328 1.39901 0.91730 1.22874 1.35246 1.14634 0.95517 0.90947 1.24990 0.95519 0.97191 0.95893 1.70023 1.38677 1.37093 1.04548 0.86176 0.79708 0.81467 0.78199 1.20270 1.20784 1.19702 1.71957 1.16207 1.01883 1.29076 0.91696 0.90920 0.92476 0.88332 0.89140 0.86095 0.89902 0.90379 0.89007 0.89942 0.88222 0.90751 0.90751 0.77286 0.89169 0.89363 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.15 0.37 -0.72 16 2 C -0.03 -0.27 6.56 -27.89 -0.18 -0.46 16 3 C 0.17 1.91 7.47 -156.38 -1.17 0.75 16 4 N -0.39 -4.39 12.16 30.90 0.38 -4.02 16 5 O 0.07 0.75 11.31 18.10 0.20 0.96 16 6 C 0.19 1.83 7.55 -13.05 -0.10 1.73 16 7 C 0.11 0.77 5.25 -4.97 -0.03 0.74 16 8 N -0.46 -3.60 5.94 -232.15 -1.38 -4.98 16 9 C 0.00 -0.03 7.47 -2.77 -0.02 -0.05 16 10 C -0.13 -0.70 7.84 -25.80 -0.20 -0.90 16 11 C 0.02 0.15 3.40 -66.66 -0.23 -0.08 16 12 H 0.09 0.44 7.80 -51.92 -0.40 0.04 16 13 C 0.14 1.49 5.80 -4.04 -0.02 1.47 16 14 N -0.73 -9.52 5.50 -60.29 -0.33 -9.85 16 15 C 0.53 9.93 7.85 -10.99 -0.09 9.84 16 16 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 17 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 23 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 N -0.46 -5.49 11.55 -9.87 -0.11 -5.61 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.12 0.82 6.55 -51.93 -0.34 0.48 16 34 H 0.08 0.34 7.69 -51.93 -0.40 -0.06 16 35 H 0.08 0.35 7.78 -51.93 -0.40 -0.06 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.61 7.94 -51.93 -0.41 0.20 16 39 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.07 0.91 7.91 -51.92 -0.41 0.50 16 41 H 0.39 4.13 6.59 -40.82 -0.27 3.86 16 42 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -36.95 387.02 -9.48 -46.43 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.41 Total: -0.56 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.25 Total: -3.64 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.71 Total: -50.06 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.29 Total: -10.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.95 -9.48 -46.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323181082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.129 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds