Wall clock time and date at job start Sat Apr 11 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29411 * 125.69679 * 2 1 4 4 N 1.26398 * 116.47760 * 179.97438 * 3 2 1 5 5 C 1.29413 * 116.47458 * 359.97438 * 4 3 2 6 6 C 1.50705 * 125.69874 * 180.02562 * 5 4 3 7 7 O 1.42894 * 109.47143 * 89.97779 * 6 5 4 8 8 C 1.42902 * 114.00335 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47331 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00029 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99898 * 179.97438 * 9 8 7 12 12 C 1.47420 * 125.64592 * 354.63463 * 11 9 8 13 13 C 1.54696 * 104.94052 * 204.07372 * 12 11 9 14 14 C 1.55164 * 101.67566 * 323.27728 * 13 12 11 15 15 C 1.47023 * 125.64877 * 174.94258 * 11 9 8 16 16 H 1.09006 * 109.88256 * 59.48558 * 15 11 9 17 17 C 1.53004 * 109.88209 * 298.47784 * 15 11 9 18 18 N 1.46498 * 109.47251 * 175.35032 * 17 15 11 19 19 C 1.36930 * 120.00000 * 184.93226 * 18 17 15 20 20 H 1.07996 * 120.00231 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00034 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99828 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00139 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47127 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47174 * 119.99760 * 23 21 19 26 26 H 1.48496 * 109.46911 * 239.99913 * 23 21 19 27 27 S 1.71217 * 125.69568 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47032 * 90.02558 * 1 2 3 29 29 H 1.09004 * 109.47433 * 210.02300 * 1 2 3 30 30 H 1.08996 * 109.47220 * 330.02193 * 1 2 3 31 31 H 1.08996 * 109.47208 * 209.97875 * 6 5 4 32 32 H 1.09000 * 109.47115 * 329.97846 * 6 5 4 33 33 H 1.08999 * 109.46846 * 299.99973 * 8 7 6 34 34 H 1.09005 * 109.46434 * 59.99514 * 8 7 6 35 35 H 1.09000 * 110.36789 * 322.99647 * 12 11 9 36 36 H 1.08995 * 110.37092 * 85.33033 * 12 11 9 37 37 H 1.09001 * 111.10674 * 205.11343 * 13 12 11 38 38 H 1.08996 * 110.85072 * 81.33293 * 13 12 11 39 39 H 1.09002 * 110.71841 * 276.97323 * 14 13 12 40 40 H 1.09004 * 110.87154 * 153.76761 * 14 13 12 41 41 H 1.09000 * 109.46664 * 295.35295 * 17 15 11 42 42 H 1.09000 * 109.47041 * 55.34670 * 17 15 11 43 43 H 0.97006 * 119.99920 * 4.93620 * 18 17 15 44 44 H 0.96996 * 119.99939 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0005 5 6 3.8936 -0.3874 0.0015 6 6 5.3232 -0.8642 0.0028 7 8 5.7743 -1.0136 1.3504 8 6 7.1258 -1.4636 1.4646 9 6 7.4937 -1.5847 2.9209 10 8 6.6786 -1.3128 3.7768 11 7 8.7282 -1.9960 3.2721 12 6 9.7741 -2.4640 2.3446 13 6 10.6947 -3.3636 3.2028 14 6 10.6903 -2.6127 4.5607 15 6 9.2525 -2.0583 4.6443 16 1 8.6336 -2.7223 5.2479 17 6 9.2664 -0.6577 5.2601 18 7 9.6847 -0.7444 6.6614 19 6 9.6750 0.3754 7.4493 20 1 9.3594 1.3226 7.0377 21 6 10.0718 0.2933 8.7770 22 7 10.4569 -0.8611 9.2786 23 14 10.0580 1.8208 9.8522 24 1 9.5867 2.9823 9.0560 25 1 9.1456 1.6070 11.0043 26 1 11.4310 2.0875 10.3509 27 16 2.5060 -1.3905 0.0006 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5135 31 1 5.3867 -1.8238 -0.5101 32 1 5.9498 -0.1354 -0.5113 33 1 7.2270 -2.4357 0.9819 34 1 7.7894 -0.7469 0.9808 35 1 9.3308 -3.0399 1.5323 36 1 10.3362 -1.6183 1.9487 37 1 11.7003 -3.4084 2.7846 38 1 10.2724 -4.3629 3.3077 39 1 11.4171 -1.8004 4.5545 40 1 10.8875 -3.2987 5.3845 41 1 9.9648 -0.0263 4.7108 42 1 8.2667 -0.2267 5.2052 43 1 9.9685 -1.5952 7.0310 44 1 10.7345 -0.9184 10.2062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324186423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:42 Heat of formation + Delta-G solvation = -22.140778 kcal Electronic energy + Delta-G solvation = -26430.241982 eV Core-core repulsion = 22509.699060 eV Total energy + Delta-G solvation = -3920.542922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.42401 -41.31731 -39.33627 -38.22235 -36.46692 -34.45718 -33.60779 -32.73436 -31.51337 -30.49476 -28.85451 -27.38493 -26.76500 -25.31979 -24.74601 -23.47057 -21.88348 -21.09886 -20.46581 -20.28414 -19.17231 -18.42678 -17.80366 -17.68738 -17.10988 -16.82682 -16.57907 -16.40553 -15.94651 -15.49904 -15.33880 -15.08295 -14.91421 -14.68693 -14.34972 -14.06507 -13.96995 -13.83130 -13.67666 -13.45459 -13.33573 -13.03405 -13.00151 -12.90584 -12.77980 -12.20277 -12.05785 -11.94793 -11.77444 -11.58079 -11.56781 -11.35967 -11.07571 -10.96826 -10.84891 -10.77450 -10.67041 -9.70860 -9.09330 -8.02250 -5.32095 -0.73360 -0.15188 0.24651 1.27810 1.41527 1.43763 1.52348 1.54460 1.71324 2.50004 2.65422 3.10570 3.30057 3.41275 3.58908 3.65974 3.75968 3.85422 3.92733 4.05809 4.09949 4.14487 4.23704 4.30868 4.33569 4.34317 4.41766 4.53810 4.58846 4.68844 4.74385 4.81907 4.93743 5.03305 5.03348 5.12924 5.17372 5.33493 5.40558 5.43265 5.84951 6.19961 6.52589 7.13449 7.26369 7.42910 7.96971 8.25333 9.21103 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.002292 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.181893 B =12215.810272 C =14057.868262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.023 4.023 3 N -0.308 5.308 4 N -0.282 5.282 5 C -0.046 4.046 6 C 0.140 3.860 7 O -0.398 6.398 8 C 0.060 3.940 9 C 0.511 3.489 10 O -0.581 6.581 11 N -0.610 5.610 12 C 0.091 3.909 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.138 3.862 16 H 0.047 0.953 17 C 0.153 3.847 18 N -0.736 5.736 19 C -0.252 4.252 20 H 0.064 0.936 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.976 3.024 24 H -0.273 1.273 25 H -0.290 1.290 26 H -0.282 1.282 27 S 0.255 5.745 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.020 0.980 42 H -0.003 1.003 43 H 0.378 0.622 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 -10.562 -30.442 33.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.301 4.301 3 N -0.147 5.147 4 N -0.121 5.121 5 C -0.325 4.325 6 C 0.061 3.939 7 O -0.317 6.317 8 C -0.018 4.018 9 C 0.301 3.699 10 O -0.460 6.460 11 N -0.345 5.345 12 C -0.030 4.030 13 C -0.156 4.156 14 C -0.157 4.157 15 C 0.034 3.966 16 H 0.066 0.934 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.263 4.263 22 N -0.614 5.614 23 Si 0.804 3.196 24 H -0.198 1.198 25 H -0.217 1.217 26 H -0.209 1.209 27 S 0.499 5.501 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.037 0.963 42 H 0.016 0.984 43 H 0.210 0.790 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.302 -9.828 -29.859 33.405 hybrid contribution 0.136 1.063 1.465 1.815 sum -11.167 -8.765 -28.394 31.745 Atomic orbital electron populations 1.20678 0.80962 1.06011 1.06129 1.30049 1.06353 0.92082 1.01637 1.71438 0.97081 1.28760 1.17459 1.71364 1.07430 1.19109 1.14246 1.29162 1.04360 0.92953 1.06055 1.21005 0.85518 1.03266 0.84120 1.88028 1.28563 1.88693 1.26376 1.22369 0.84042 1.04086 0.91323 1.20876 0.80433 0.76445 0.92158 1.90769 1.50343 1.50727 1.54115 1.48575 1.12945 1.64722 1.08289 1.22768 0.88488 0.98995 0.92717 1.22784 1.01675 0.98448 0.92704 1.22593 0.92577 1.00443 1.00116 1.21536 0.96449 0.95259 0.83401 0.93442 1.20933 0.95541 0.95795 0.85238 1.42310 1.79685 1.08960 1.06975 1.19560 1.36523 0.89447 0.92803 0.91793 1.25572 1.02256 1.00210 0.98219 1.69804 1.52027 1.25062 1.14520 0.85047 0.77267 0.78824 0.78434 1.19780 1.21734 1.20892 1.83311 0.94970 1.09258 1.62555 0.86677 0.87193 0.88876 0.85836 0.88109 0.84941 0.86700 0.86249 0.89429 0.86709 0.89642 0.90968 0.90555 0.96254 0.98446 0.78962 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.48 71.23 0.75 0.08 16 2 C -0.02 -0.43 7.53 88.46 0.67 0.24 16 3 N -0.31 -8.39 11.66 -50.85 -0.59 -8.98 16 4 N -0.28 -8.14 11.66 -50.84 -0.59 -8.74 16 5 C -0.05 -1.00 7.16 88.47 0.63 -0.36 16 6 C 0.14 2.18 6.54 71.24 0.47 2.65 16 7 O -0.40 -9.86 9.86 -129.94 -1.28 -11.14 16 8 C 0.06 1.09 5.51 71.23 0.39 1.48 16 9 C 0.51 16.06 7.65 87.65 0.67 16.73 16 10 O -0.58 -26.52 15.67 16.01 0.25 -26.27 16 11 N -0.61 -16.77 3.07 -788.49 -2.42 -19.19 16 12 C 0.09 1.30 6.64 86.78 0.58 1.87 16 13 C -0.12 -1.81 7.07 31.91 0.23 -1.58 16 14 C -0.12 -3.28 6.09 31.78 0.19 -3.09 16 15 C 0.14 4.96 2.92 45.34 0.13 5.09 16 16 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 17 C 0.15 7.20 5.66 86.38 0.49 7.69 16 18 N -0.74 -41.13 5.45 -343.45 -1.87 -43.00 16 19 C -0.25 -15.40 9.99 84.04 0.84 -14.56 16 20 H 0.06 3.90 7.83 -2.91 -0.02 3.88 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.96 -60.90 13.06 21.65 0.28 -60.61 16 23 Si 0.98 48.86 29.55 68.60 2.03 50.89 16 24 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 27 S 0.26 3.79 23.04 -56.49 -1.30 2.49 16 28 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 29 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.13 1.00 7.76 -2.39 -0.02 0.99 16 34 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.12 0.69 7.51 -2.39 -0.02 0.67 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 2.15 7.78 -2.39 -0.02 2.13 16 40 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 41 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16 42 H 0.00 -0.14 6.89 -2.39 -0.02 -0.15 16 43 H 0.38 21.58 7.44 -92.70 -0.69 20.89 16 44 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -96.19 384.20 1.33 -94.86 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.33 Total: 17.25 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.50 Total: 12.44 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -5.19 Total: -140.52 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.03 Total: -37.42 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.30 Total: 2.49 kcal Total: -96.19 1.33 -94.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324186423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.722 kcal (2) G-P(sol) polarization free energy of solvation -96.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds