Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 6 6 C 1.34777 * 120.00660 * 275.00187 * 5 3 2 7 7 O 1.21348 * 119.99550 * 359.97438 * 6 5 3 8 8 C 1.49445 * 120.00484 * 179.97438 * 6 5 3 9 9 O 1.21348 * 119.99965 * 0.02562 * 8 6 5 10 10 N 1.34769 * 120.00226 * 180.02562 * 8 6 5 11 11 C 1.46502 * 120.00118 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47002 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47051 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00366 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00154 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00129 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47420 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47158 * 120.00069 * 17 15 13 20 20 H 1.48500 * 109.47198 * 239.99611 * 17 15 13 21 21 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 22 22 C 1.38232 * 119.98708 * 264.99808 * 21 3 2 23 23 C 1.38182 * 120.05072 * 179.97438 * 22 21 3 24 24 C 1.38495 * 120.02706 * 359.97438 * 23 22 21 25 25 F 1.35093 * 120.01538 * 179.97438 * 24 23 22 26 26 C 1.38401 * 119.97369 * 359.97438 * 24 23 22 27 27 C 1.38444 * 119.94738 * 359.77319 * 26 24 23 28 28 F 1.35098 * 120.01145 * 180.22414 * 27 26 24 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 0.97010 * 119.99804 * 95.00047 * 5 3 2 35 35 H 0.97000 * 120.00363 * 0.02562 * 10 8 6 36 36 H 1.09000 * 109.47426 * 299.99916 * 11 10 8 37 37 H 1.08998 * 109.47239 * 60.00694 * 11 10 8 38 38 H 1.09000 * 109.47151 * 299.99688 * 12 11 10 39 39 H 1.08995 * 109.47432 * 60.00018 * 12 11 10 40 40 H 0.97002 * 120.00320 * 180.02562 * 16 15 13 41 41 H 1.08004 * 119.97180 * 359.97438 * 22 21 3 42 42 H 1.07997 * 119.98659 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.02420 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3397 2.6327 0.4337 8 6 0.0395 3.3320 2.6442 9 8 0.8146 3.3642 3.5774 10 7 -1.1779 3.8985 2.7596 11 6 -1.5654 4.5534 4.0114 12 6 -2.9850 5.1086 3.8783 13 6 -3.3834 5.7829 5.1658 14 1 -2.6934 5.8122 5.9961 15 6 -4.6292 6.3615 5.2841 16 7 -5.4698 6.3255 4.2733 17 14 -5.1233 7.1968 6.8803 18 1 -4.0075 7.1005 7.8555 19 1 -5.4294 8.6258 6.6171 20 1 -6.3262 6.5275 7.4375 21 6 3.5419 1.4444 -0.1239 22 6 4.3286 1.5149 1.0105 23 6 5.7059 1.5162 0.8985 24 6 6.2996 1.4462 -0.3508 25 9 7.6461 1.4480 -0.4601 26 6 5.5130 1.3745 -1.4872 27 6 4.1332 1.3680 -1.3734 28 9 3.3641 1.2935 -2.4816 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.2720 2.1231 1.9978 35 1 -1.7976 3.8725 2.0138 36 1 -1.5338 3.8292 4.8254 37 1 -0.8744 5.3692 4.2237 38 1 -3.0171 5.8328 3.0643 39 1 -3.6758 4.2927 3.6662 40 1 -6.3462 6.7329 4.3564 41 1 3.8664 1.5690 1.9852 42 1 6.3195 1.5709 1.7855 43 1 5.9751 1.3203 -2.4618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324934416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = -163.533333 kcal Electronic energy + Delta-G solvation = -28590.702364 eV Core-core repulsion = 24077.895064 eV Total energy + Delta-G solvation = -4512.807301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.12380 -50.05606 -41.97237 -40.47283 -39.50539 -37.22640 -36.61812 -34.85046 -33.51078 -32.08792 -31.68093 -31.66779 -27.92016 -26.99193 -25.23171 -24.25785 -23.49995 -22.86747 -21.91794 -21.45583 -19.88213 -19.13725 -18.62667 -18.44109 -17.66665 -17.40938 -17.18193 -17.01917 -16.64013 -16.51168 -16.45011 -16.38737 -16.08426 -15.96800 -15.51412 -15.06652 -14.98351 -14.80647 -14.31666 -14.21440 -14.10282 -13.89484 -13.50590 -13.24579 -12.98067 -12.95469 -12.82790 -12.54388 -12.50816 -12.46725 -12.28863 -12.22373 -11.87668 -11.67607 -11.40845 -10.70290 -10.61916 -10.44199 -10.19309 -10.16714 -9.71460 -8.23248 -6.34191 -0.22560 -0.08761 0.32329 1.25264 1.42681 1.44074 1.56805 2.11772 2.22896 2.39598 2.62702 2.75571 3.11894 3.16027 3.33222 3.41404 3.49308 3.81604 3.93788 3.98018 4.13529 4.31607 4.39701 4.46582 4.53447 4.64179 4.70858 4.80022 4.82329 4.82604 4.90341 4.96680 5.03449 5.06174 5.08773 5.25063 5.41299 5.43410 5.55836 5.63720 5.75971 5.90180 6.13480 6.34087 6.69206 6.80380 6.92337 7.35433 8.88895 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.001978 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.874149 B =14149.286454 C =14947.253533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.190 3.810 4 H 0.093 0.907 5 N -0.684 5.684 6 C 0.518 3.482 7 O -0.526 6.526 8 C 0.500 3.500 9 O -0.547 6.547 10 N -0.688 5.688 11 C 0.138 3.862 12 C 0.018 3.982 13 C -0.542 4.542 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.139 4.139 22 C -0.056 4.056 23 C -0.146 4.146 24 C 0.123 3.877 25 F -0.135 7.135 26 C -0.186 4.186 27 C 0.131 3.869 28 F -0.133 7.133 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.419 0.581 35 H 0.414 0.586 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.265 0.735 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.216 -14.419 -11.031 30.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.086 3.914 4 H 0.111 0.889 5 N -0.340 5.340 6 C 0.299 3.701 7 O -0.402 6.402 8 C 0.281 3.719 9 O -0.425 6.425 10 N -0.339 5.339 11 C 0.016 3.984 12 C -0.020 4.020 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.141 4.141 22 C -0.074 4.074 23 C -0.165 4.165 24 C 0.103 3.897 25 F -0.113 7.113 26 C -0.205 4.205 27 C 0.112 3.888 28 F -0.111 7.111 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.259 0.741 35 H 0.251 0.749 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.178 0.822 42 H 0.186 0.814 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 24.056 -14.363 -11.129 30.147 hybrid contribution -0.620 0.619 0.217 0.903 sum 23.436 -13.744 -10.912 29.278 Atomic orbital electron populations 1.21796 0.95381 1.01519 1.01684 1.21941 0.96219 0.93774 1.04175 1.19847 0.89710 0.95026 0.86841 0.88949 1.45789 1.15481 1.55374 1.17404 1.19879 0.83221 0.79443 0.87595 1.90790 1.51390 1.58045 1.39941 1.20292 0.82859 0.80293 0.88451 1.90714 1.51493 1.59587 1.40751 1.46064 1.15572 1.54165 1.18121 1.21474 0.97134 0.95825 0.84008 1.19182 0.90418 0.95417 0.96955 1.21480 1.00500 1.36284 0.99813 0.91648 1.25925 0.96522 0.96798 1.00281 1.70083 1.08176 1.45712 1.32823 0.85358 0.78359 0.77951 0.79135 1.18530 1.20466 1.20452 1.19908 0.95327 1.05997 0.92876 1.20861 0.92539 0.95557 0.98445 1.21460 0.95550 1.02245 0.97247 1.17462 0.77019 1.01082 0.94120 1.91542 1.29177 1.93651 1.96955 1.21155 0.91814 1.06735 1.00845 1.17059 0.88180 1.01698 0.81908 1.91541 1.75016 1.93394 1.51187 0.94331 0.93090 0.91758 0.89781 0.89398 0.74052 0.74927 0.91905 0.91981 0.97478 0.97406 0.92610 0.82211 0.81353 0.81891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.51 71.98 0.61 -2.33 16 2 C -0.12 -1.89 5.59 30.59 0.17 -1.72 16 3 C 0.19 3.25 2.24 44.24 0.10 3.35 16 4 H 0.09 1.94 7.23 -2.39 -0.02 1.92 16 5 N -0.68 -13.32 4.94 -447.45 -2.21 -15.53 16 6 C 0.52 13.85 6.46 87.27 0.56 14.41 16 7 O -0.53 -15.94 13.62 -3.24 -0.04 -15.98 16 8 C 0.50 15.89 7.89 87.27 0.69 16.58 16 9 O -0.55 -18.77 16.48 -3.24 -0.05 -18.83 16 10 N -0.69 -24.02 5.55 -464.42 -2.58 -26.60 16 11 C 0.14 5.62 5.61 86.38 0.48 6.11 16 12 C 0.02 0.88 5.09 29.85 0.15 1.04 16 13 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 14 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.00 0.19 5.46 84.65 0.46 0.65 16 16 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 17 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 C -0.14 -1.93 5.06 -19.82 -0.10 -2.03 16 22 C -0.06 -0.58 9.23 22.26 0.21 -0.37 16 23 C -0.15 -1.39 10.02 22.32 0.22 -1.17 16 24 C 0.12 1.48 7.30 22.37 0.16 1.64 16 25 F -0.13 -1.86 17.27 44.97 0.78 -1.08 16 26 C -0.19 -2.29 10.01 22.36 0.22 -2.06 16 27 C 0.13 1.91 7.24 22.37 0.16 2.07 16 28 F -0.13 -2.27 16.57 44.97 0.75 -1.52 16 29 H 0.04 0.92 5.65 -2.39 -0.01 0.91 16 30 H 0.05 1.15 7.85 -2.39 -0.02 1.13 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 6.70 5.68 -92.70 -0.53 6.18 16 35 H 0.41 14.00 7.94 -92.71 -0.74 13.26 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.16 1.13 6.07 -2.91 -0.02 1.11 16 42 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -65.01 372.97 3.11 -61.91 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.19 Total: 19.95 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 4.34 Total: 6.85 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.50 Total: -96.33 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.10 Total: -34.81 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 1.52 Total: -2.60 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.01 3.11 -61.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324934416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.626 kcal (2) G-P(sol) polarization free energy of solvation -65.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds