Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29416 * 125.69595 * 2 1 4 4 N 1.26403 * 116.47740 * 179.67570 * 3 2 1 5 5 C 1.29422 * 116.47109 * 0.53385 * 4 3 2 6 6 C 1.50703 * 125.69071 * 179.76485 * 5 4 3 7 7 O 1.42902 * 109.46829 * 89.70325 * 6 5 4 8 8 C 1.42897 * 113.99763 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47100 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99614 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00186 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.64952 * 179.97438 * 11 9 8 13 13 C 1.54902 * 104.83310 * 155.91190 * 12 11 9 14 14 H 1.09001 * 111.03555 * 278.92320 * 13 12 11 15 15 C 1.52995 * 111.00678 * 155.08576 * 13 12 11 16 16 C 1.55161 * 101.58159 * 37.01096 * 13 12 11 17 17 H 1.09003 * 110.71851 * 205.95815 * 16 13 12 18 18 N 1.46496 * 110.71727 * 82.86333 * 16 13 12 19 19 C 1.36945 * 119.99718 * 155.00120 * 18 16 13 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47017 * 125.64661 * 0.05037 * 11 9 8 28 28 S 1.71215 * 108.60684 * 359.50893 * 5 4 3 29 29 H 1.09001 * 109.47397 * 270.04027 * 1 2 3 30 30 H 1.09003 * 109.46953 * 30.04417 * 1 2 3 31 31 H 1.09001 * 109.47012 * 150.03805 * 1 2 3 32 32 H 1.08998 * 109.47400 * 329.69795 * 6 5 4 33 33 H 1.09000 * 109.46792 * 209.69692 * 6 5 4 34 34 H 1.09000 * 109.47453 * 59.99492 * 8 7 6 35 35 H 1.08996 * 109.46971 * 299.99051 * 8 7 6 36 36 H 1.09005 * 110.36843 * 37.07156 * 12 11 9 37 37 H 1.09000 * 110.37065 * 274.75154 * 12 11 9 38 38 H 1.08994 * 109.47331 * 307.80294 * 15 13 12 39 39 H 1.09005 * 109.47138 * 67.80209 * 15 13 12 40 40 H 1.09001 * 109.47526 * 187.80303 * 15 13 12 41 41 H 0.96996 * 120.00499 * 334.99850 * 18 16 13 42 42 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.88684 * 61.60081 * 27 11 9 44 44 H 1.09004 * 109.87918 * 300.43179 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2620 1.0510 0.0000 4 7 3.5097 0.8485 0.0064 5 6 3.8936 -0.3874 0.0015 6 6 5.3233 -0.8640 0.0023 7 8 5.7744 -1.0143 1.3499 8 6 7.1256 -1.4654 1.4636 9 6 7.4936 -1.5873 2.9199 10 8 6.6791 -1.3142 3.7761 11 7 8.7278 -1.9996 3.2709 12 6 9.2192 -2.1623 4.6512 13 6 10.3713 -3.1922 4.5432 14 1 9.9837 -4.2102 4.5053 15 6 11.3630 -3.0287 5.6967 16 6 11.0200 -2.7934 3.1913 17 1 11.5265 -3.6466 2.7401 18 7 11.9508 -1.6768 3.3726 19 6 12.9809 -1.4938 2.4890 20 1 13.1072 -2.1729 1.6588 21 6 13.8626 -0.4355 2.6604 22 7 13.7090 0.3918 3.6725 23 14 15.2682 -0.1864 1.4554 24 1 16.0589 1.0047 1.8568 25 1 16.1428 -1.3864 1.4601 26 1 14.7196 0.0211 0.0912 27 6 9.8075 -2.3603 2.3405 28 16 2.5060 -1.3905 0.0010 29 1 -0.3634 0.0007 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 5.9497 -0.1349 -0.5114 33 1 5.3867 -1.8234 -0.5112 34 1 7.7897 -0.7490 0.9800 35 1 7.2260 -2.4373 0.9806 36 1 8.4264 -2.5458 5.2935 37 1 9.5936 -1.2132 5.0350 38 1 11.6830 -1.9885 5.7561 39 1 10.8825 -3.3149 6.6323 40 1 12.2300 -3.6662 5.5237 41 1 11.8376 -1.0671 4.1184 42 1 14.3254 1.1311 3.7924 43 1 10.0729 -1.4983 1.7284 44 1 9.4880 -3.1854 1.7038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327879873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = 6.961090 kcal Electronic energy + Delta-G solvation = -26542.940916 eV Core-core repulsion = 22623.659946 eV Total energy + Delta-G solvation = -3919.280970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60469 -39.93981 -38.35859 -37.19572 -33.99352 -33.74905 -32.48855 -30.88767 -30.53054 -28.55535 -27.75707 -26.86183 -25.37843 -24.53337 -23.86907 -22.14071 -20.32659 -19.69406 -19.34390 -19.14827 -17.67240 -17.31075 -16.66710 -16.47432 -16.02549 -15.69186 -15.48088 -15.03301 -14.60614 -14.29241 -14.08311 -13.79647 -13.62345 -13.53149 -13.21181 -13.08767 -12.92003 -12.80796 -12.39917 -12.20952 -11.99023 -11.94543 -11.58393 -11.16643 -10.96176 -10.81653 -10.79148 -10.58161 -10.50523 -10.33079 -10.14502 -10.04765 -9.99749 -9.97246 -9.72670 -9.58330 -9.05587 -8.32413 -7.12463 -5.88112 -3.18923 0.00122 0.52398 0.99481 2.14173 2.77479 2.83070 3.36574 3.41465 3.43311 3.49307 3.89979 4.22040 4.40939 4.48424 4.59639 4.68460 4.91026 4.93299 4.97171 5.04223 5.07662 5.11891 5.14244 5.18526 5.32006 5.39884 5.47014 5.58894 5.72694 5.87661 5.92252 6.13152 6.21876 6.29047 6.31977 6.45403 6.50485 6.67907 6.71917 6.90661 7.58291 7.78075 8.22541 8.29225 8.36768 9.41223 9.95531 10.30090 11.33613 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002140 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.125985 B =13082.016170 C =14137.993914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 N -0.262 5.262 4 N -0.236 5.236 5 C -0.018 4.018 6 C 0.142 3.858 7 O -0.356 6.356 8 C 0.050 3.950 9 C 0.528 3.472 10 O -0.534 6.534 11 N -0.606 5.606 12 C 0.117 3.883 13 C -0.115 4.115 14 H 0.078 0.922 15 C -0.130 4.130 16 C 0.173 3.827 17 H 0.074 0.926 18 N -0.711 5.711 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.928 5.928 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.286 1.286 27 C 0.066 3.934 28 S 0.193 5.807 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.387 0.613 42 H 0.258 0.742 43 H 0.078 0.922 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.510 -9.417 -8.070 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.297 4.297 3 N -0.101 5.101 4 N -0.076 5.076 5 C -0.297 4.297 6 C 0.061 3.939 7 O -0.274 6.274 8 C -0.029 4.029 9 C 0.315 3.685 10 O -0.410 6.410 11 N -0.341 5.341 12 C -0.005 4.005 13 C -0.135 4.135 14 H 0.097 0.903 15 C -0.188 4.188 16 C 0.060 3.940 17 H 0.092 0.908 18 N -0.351 5.351 19 C -0.381 4.381 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.575 5.575 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.060 4.060 28 S 0.436 5.564 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.223 0.777 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.913 -8.824 -7.593 24.814 hybrid contribution 1.027 0.552 -0.737 1.379 sum -20.887 -8.272 -8.330 23.960 Atomic orbital electron populations 1.20411 0.83736 1.04770 1.04589 1.29352 1.04523 0.92049 1.03820 1.71503 0.96786 1.26748 1.15034 1.71442 1.06507 1.17062 1.12554 1.28696 1.02192 0.92720 1.06058 1.20673 0.86550 1.00890 0.85738 1.88045 1.27583 1.88103 1.23635 1.22240 0.84074 1.00910 0.95694 1.19643 0.81060 0.77770 0.90030 1.90713 1.49051 1.49413 1.51862 1.48343 1.11186 1.65496 1.09040 1.22279 0.95918 0.99490 0.82820 1.22654 0.95383 0.97999 0.97498 0.90333 1.21532 0.98095 1.03674 0.95468 1.21197 0.88702 0.92157 0.91937 0.90789 1.42438 1.29992 1.30083 1.32636 1.19175 1.03949 1.09414 1.05530 0.91016 1.24767 0.99495 0.97886 0.98303 1.69647 1.39261 1.17846 1.30728 0.86270 0.82176 0.77222 0.80463 1.21702 1.21188 1.21233 1.23387 0.88767 1.00136 0.93718 1.83647 0.97287 1.11325 1.64120 0.88872 0.88678 0.89572 0.89131 0.90190 0.89412 0.89914 0.91204 0.91116 0.91158 0.93729 0.92087 0.77734 0.93256 0.90350 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.48 36.00 0.38 0.01 16 2 C -0.02 -0.19 7.53 -13.30 -0.10 -0.29 16 3 N -0.26 -3.51 11.66 32.58 0.38 -3.13 16 4 N -0.24 -3.44 11.66 32.58 0.38 -3.06 16 5 C -0.02 -0.21 7.16 -13.29 -0.10 -0.31 16 6 C 0.14 1.46 6.54 36.01 0.24 1.70 16 7 O -0.36 -5.07 9.86 -55.14 -0.54 -5.61 16 8 C 0.05 0.65 5.61 36.01 0.20 0.85 16 9 C 0.53 8.98 7.93 -10.98 -0.09 8.89 16 10 O -0.53 -11.19 16.76 -14.36 -0.24 -11.43 16 11 N -0.61 -9.86 3.33 -170.53 -0.57 -10.42 16 12 C 0.12 1.90 6.33 -2.53 -0.02 1.88 16 13 C -0.12 -1.72 3.51 -88.48 -0.31 -2.03 16 14 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.13 -1.99 8.85 37.16 0.33 -1.66 16 16 C 0.17 2.97 3.39 -66.10 -0.22 2.75 16 17 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 18 N -0.71 -15.87 4.50 -51.65 -0.23 -16.10 16 19 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 20 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -26.64 13.06 55.49 0.72 -25.91 16 23 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.07 1.02 6.23 -3.07 -0.02 1.00 16 28 S 0.19 1.65 23.04 -107.50 -2.48 -0.83 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 37 H 0.07 1.27 7.98 -51.93 -0.41 0.86 16 38 H 0.07 1.26 6.48 -51.93 -0.34 0.92 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.39 9.43 6.31 -40.82 -0.26 9.18 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -34.72 384.38 -8.22 -42.94 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.46 Total: 5.52 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 0.05 Total: 6.04 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.68 Total: -58.63 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.78 Total: -17.04 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.72 -8.22 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327879873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.902 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds