Wall clock time and date at job start Sat Apr 11 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29416 * 125.69595 * 2 1 4 4 N 1.26403 * 116.47740 * 179.67570 * 3 2 1 5 5 C 1.29422 * 116.47109 * 0.53385 * 4 3 2 6 6 C 1.50703 * 125.69071 * 179.76485 * 5 4 3 7 7 O 1.42902 * 109.46829 * 89.70325 * 6 5 4 8 8 C 1.42897 * 113.99763 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47100 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99614 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00186 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.64952 * 179.97438 * 11 9 8 13 13 C 1.54902 * 104.83310 * 155.91190 * 12 11 9 14 14 H 1.09001 * 111.03555 * 278.92320 * 13 12 11 15 15 C 1.52995 * 111.00678 * 155.08576 * 13 12 11 16 16 C 1.55161 * 101.58159 * 37.01096 * 13 12 11 17 17 H 1.09003 * 110.71851 * 205.95815 * 16 13 12 18 18 N 1.46496 * 110.71727 * 82.86333 * 16 13 12 19 19 C 1.36945 * 119.99718 * 155.00120 * 18 16 13 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47017 * 125.64661 * 0.05037 * 11 9 8 28 28 S 1.71215 * 108.60684 * 359.50893 * 5 4 3 29 29 H 1.09001 * 109.47397 * 270.04027 * 1 2 3 30 30 H 1.09003 * 109.46953 * 30.04417 * 1 2 3 31 31 H 1.09001 * 109.47012 * 150.03805 * 1 2 3 32 32 H 1.08998 * 109.47400 * 329.69795 * 6 5 4 33 33 H 1.09000 * 109.46792 * 209.69692 * 6 5 4 34 34 H 1.09000 * 109.47453 * 59.99492 * 8 7 6 35 35 H 1.08996 * 109.46971 * 299.99051 * 8 7 6 36 36 H 1.09005 * 110.36843 * 37.07156 * 12 11 9 37 37 H 1.09000 * 110.37065 * 274.75154 * 12 11 9 38 38 H 1.08994 * 109.47331 * 307.80294 * 15 13 12 39 39 H 1.09005 * 109.47138 * 67.80209 * 15 13 12 40 40 H 1.09001 * 109.47526 * 187.80303 * 15 13 12 41 41 H 0.96996 * 120.00499 * 334.99850 * 18 16 13 42 42 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.88684 * 61.60081 * 27 11 9 44 44 H 1.09004 * 109.87918 * 300.43179 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2620 1.0510 0.0000 4 7 3.5097 0.8485 0.0064 5 6 3.8936 -0.3874 0.0015 6 6 5.3233 -0.8640 0.0023 7 8 5.7744 -1.0143 1.3499 8 6 7.1256 -1.4654 1.4636 9 6 7.4936 -1.5873 2.9199 10 8 6.6791 -1.3142 3.7761 11 7 8.7278 -1.9996 3.2709 12 6 9.2192 -2.1623 4.6512 13 6 10.3713 -3.1922 4.5432 14 1 9.9837 -4.2102 4.5053 15 6 11.3630 -3.0287 5.6967 16 6 11.0200 -2.7934 3.1913 17 1 11.5265 -3.6466 2.7401 18 7 11.9508 -1.6768 3.3726 19 6 12.9809 -1.4938 2.4890 20 1 13.1072 -2.1729 1.6588 21 6 13.8626 -0.4355 2.6604 22 7 13.7090 0.3918 3.6725 23 14 15.2682 -0.1864 1.4554 24 1 16.0589 1.0047 1.8568 25 1 16.1428 -1.3864 1.4601 26 1 14.7196 0.0211 0.0912 27 6 9.8075 -2.3603 2.3405 28 16 2.5060 -1.3905 0.0010 29 1 -0.3634 0.0007 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 5.9497 -0.1349 -0.5114 33 1 5.3867 -1.8234 -0.5112 34 1 7.7897 -0.7490 0.9800 35 1 7.2260 -2.4373 0.9806 36 1 8.4264 -2.5458 5.2935 37 1 9.5936 -1.2132 5.0350 38 1 11.6830 -1.9885 5.7561 39 1 10.8825 -3.3149 6.6323 40 1 12.2300 -3.6662 5.5237 41 1 11.8376 -1.0671 4.1184 42 1 14.3254 1.1311 3.7924 43 1 10.0729 -1.4983 1.7284 44 1 9.4880 -3.1854 1.7038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327879873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:56 Heat of formation + Delta-G solvation = -17.705808 kcal Electronic energy + Delta-G solvation = -26544.010553 eV Core-core repulsion = 22623.659946 eV Total energy + Delta-G solvation = -3920.350607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.42854 -41.22675 -39.48131 -38.43909 -35.69056 -34.46165 -33.95875 -32.26231 -31.56237 -29.61569 -29.23823 -27.69580 -26.50517 -25.71163 -25.27084 -23.50549 -21.12308 -20.70242 -20.48420 -20.35182 -19.39636 -18.41453 -17.82796 -17.48516 -17.08939 -16.75776 -16.57416 -16.26400 -16.02662 -15.68762 -15.31813 -14.91969 -14.63787 -14.47207 -14.38686 -14.06648 -13.98197 -13.65897 -13.42775 -13.33771 -13.19028 -13.05484 -12.96145 -12.84597 -12.72575 -12.30616 -12.17247 -11.96785 -11.57846 -11.44317 -11.37631 -11.36326 -11.07053 -10.92265 -10.88220 -10.79006 -10.67853 -9.67224 -8.98628 -7.89513 -5.17745 -0.73547 -0.16291 0.24352 1.28332 1.50300 1.52008 1.53336 1.59257 1.75406 2.59782 2.63396 3.09764 3.40434 3.42365 3.57798 3.73236 3.82175 3.91879 3.94272 4.06534 4.11367 4.14253 4.19397 4.29809 4.38558 4.44409 4.59365 4.62665 4.67220 4.70726 4.74917 4.89836 4.99885 5.02805 5.04613 5.20173 5.25818 5.36010 5.56741 5.62564 5.79569 6.31315 6.50734 7.07583 7.38943 7.42733 8.14262 8.35874 9.33513 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002140 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.125985 B =13082.016170 C =14137.993914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.022 4.022 3 N -0.308 5.308 4 N -0.283 5.283 5 C -0.046 4.046 6 C 0.138 3.862 7 O -0.390 6.390 8 C 0.057 3.943 9 C 0.519 3.481 10 O -0.583 6.583 11 N -0.605 5.605 12 C 0.114 3.886 13 C -0.099 4.099 14 H 0.113 0.887 15 C -0.125 4.125 16 C 0.161 3.839 17 H 0.091 0.909 18 N -0.724 5.724 19 C -0.232 4.232 20 H 0.087 0.913 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.968 3.032 24 H -0.307 1.307 25 H -0.277 1.277 26 H -0.278 1.278 27 C 0.075 3.925 28 S 0.261 5.739 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.373 0.627 42 H 0.247 0.753 43 H 0.060 0.940 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.854 -12.773 -10.071 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.300 4.300 3 N -0.147 5.147 4 N -0.122 5.122 5 C -0.325 4.325 6 C 0.058 3.942 7 O -0.309 6.309 8 C -0.022 4.022 9 C 0.308 3.692 10 O -0.464 6.464 11 N -0.339 5.339 12 C -0.008 4.008 13 C -0.119 4.119 14 H 0.131 0.869 15 C -0.183 4.183 16 C 0.051 3.949 17 H 0.109 0.891 18 N -0.363 5.363 19 C -0.364 4.364 20 H 0.105 0.895 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.798 3.202 24 H -0.234 1.234 25 H -0.203 1.203 26 H -0.204 1.204 27 C -0.050 4.050 28 S 0.505 5.495 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.206 0.794 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.271 -12.248 -9.645 28.010 hybrid contribution 1.297 1.472 -0.087 1.963 sum -21.974 -10.776 -9.732 26.338 Atomic orbital electron populations 1.20689 0.80792 1.06451 1.05805 1.30085 1.06378 0.92038 1.01522 1.71451 0.96965 1.28769 1.17477 1.71387 1.07536 1.19108 1.14192 1.29048 1.04139 0.93100 1.06259 1.20980 0.85820 1.03088 0.84273 1.87987 1.28107 1.88608 1.26183 1.22289 0.83892 1.03466 0.92578 1.20495 0.80501 0.76504 0.91677 1.90684 1.50464 1.51528 1.53677 1.48445 1.11320 1.65077 1.09061 1.22242 0.96532 0.98662 0.83383 1.22609 0.94220 0.99123 0.95903 0.86877 1.21462 0.98389 1.01382 0.97061 1.21525 0.88690 0.90932 0.93790 0.89150 1.42629 1.30615 1.31270 1.31796 1.19641 1.03342 1.08190 1.05180 0.89504 1.25510 1.02470 0.98706 1.00224 1.69821 1.40410 1.18811 1.33120 0.85292 0.79584 0.76556 0.78779 1.23378 1.20286 1.20399 1.23239 0.87603 1.00933 0.93175 1.83275 0.94635 1.09107 1.62482 0.87656 0.88333 0.86550 0.88828 0.86031 0.88415 0.85509 0.90714 0.94008 0.94612 0.91373 0.92273 0.79400 0.94431 0.92159 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.48 71.23 0.75 0.14 16 2 C -0.02 -0.40 7.53 88.46 0.67 0.27 16 3 N -0.31 -8.36 11.66 -50.85 -0.59 -8.96 16 4 N -0.28 -8.40 11.66 -50.84 -0.59 -8.99 16 5 C -0.05 -1.06 7.16 88.46 0.63 -0.43 16 6 C 0.14 2.59 6.54 71.24 0.47 3.06 16 7 O -0.39 -10.58 9.86 -129.94 -1.28 -11.86 16 8 C 0.06 1.31 5.61 71.24 0.40 1.71 16 9 C 0.52 17.08 7.93 87.66 0.69 17.77 16 10 O -0.58 -24.65 16.76 15.99 0.27 -24.38 16 11 N -0.61 -18.73 3.33 -811.81 -2.70 -21.43 16 12 C 0.11 3.65 6.33 86.85 0.55 4.20 16 13 C -0.10 -2.73 3.51 -9.40 -0.03 -2.77 16 14 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.13 -3.72 8.85 71.98 0.64 -3.08 16 16 C 0.16 5.15 3.39 46.18 0.16 5.31 16 17 H 0.09 2.66 8.09 -2.39 -0.02 2.64 16 18 N -0.72 -32.08 4.50 -317.33 -1.43 -33.50 16 19 C -0.23 -11.50 9.96 84.03 0.84 -10.66 16 20 H 0.09 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.08 -4.16 5.50 84.86 0.47 -3.70 16 22 N -0.97 -57.58 13.06 21.65 0.28 -57.30 16 23 Si 0.97 43.93 29.55 68.60 2.03 45.95 16 24 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.08 2.09 6.23 86.73 0.54 2.63 16 28 S 0.26 3.90 23.04 -56.49 -1.30 2.60 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 2.30 8.04 -2.38 -0.02 2.28 16 37 H 0.04 1.56 7.98 -2.39 -0.02 1.55 16 38 H 0.03 1.31 6.48 -2.39 -0.02 1.29 16 39 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.37 18.69 6.31 -92.71 -0.58 18.11 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 44 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -80.44 384.38 1.88 -78.56 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.44 Total: 24.86 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.76 Total: 14.45 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -5.03 Total: -130.19 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.01 Total: -36.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.30 Total: 2.60 kcal Total: -80.44 1.88 -78.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327879873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.855 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds