Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29416 * 125.69110 * 2 1 4 4 N 1.26403 * 116.47388 * 180.02562 * 3 2 1 5 5 C 1.29412 * 116.47438 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.69751 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.47223 * 90.01969 * 6 5 4 8 8 C 1.42894 * 114.00076 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47209 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99605 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.47418 * 125.64758 * 179.97438 * 11 9 8 13 13 C 1.54915 * 104.83107 * 204.17202 * 12 11 9 14 14 H 1.09002 * 111.00539 * 81.06145 * 13 12 11 15 15 C 1.53001 * 111.03575 * 204.90180 * 13 12 11 16 16 C 1.55154 * 101.58176 * 322.98725 * 13 12 11 17 17 H 1.09004 * 110.72212 * 153.86391 * 16 13 12 18 18 N 1.46503 * 110.72283 * 277.14091 * 16 13 12 19 19 C 1.36931 * 120.00202 * 204.99811 * 18 16 13 20 20 H 1.08004 * 119.99589 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00349 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99947 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00285 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46956 * 120.00247 * 23 21 19 26 26 H 1.48497 * 109.47499 * 240.00407 * 23 21 19 27 27 C 1.47029 * 125.64745 * 0.02562 * 11 9 8 28 28 S 1.71210 * 125.69866 * 180.30646 * 2 1 3 29 29 H 1.08998 * 109.47292 * 89.97940 * 1 2 3 30 30 H 1.09005 * 109.46952 * 209.97278 * 1 2 3 31 31 H 1.09000 * 109.47296 * 329.97208 * 1 2 3 32 32 H 1.09001 * 109.46886 * 330.02114 * 6 5 4 33 33 H 1.08997 * 109.47053 * 210.01909 * 6 5 4 34 34 H 1.09005 * 109.47228 * 60.00267 * 8 7 6 35 35 H 1.08998 * 109.47530 * 299.99987 * 8 7 6 36 36 H 1.08995 * 110.37279 * 85.33616 * 12 11 9 37 37 H 1.08997 * 110.36990 * 323.00814 * 12 11 9 38 38 H 1.09000 * 109.47012 * 175.39412 * 15 13 12 39 39 H 1.08999 * 109.46864 * 295.38705 * 15 13 12 40 40 H 1.08992 * 109.47148 * 55.39463 * 15 13 12 41 41 H 0.96996 * 119.99702 * 24.99672 * 18 16 13 42 42 H 0.96993 * 120.00128 * 179.97438 * 22 21 19 43 43 H 1.08993 * 109.88066 * 59.47708 * 27 11 9 44 44 H 1.09003 * 109.87770 * 298.31367 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2620 1.0511 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8937 -0.3873 -0.0015 6 6 5.3233 -0.8639 -0.0028 7 8 5.7760 -1.0158 1.3441 8 6 7.1272 -1.4671 1.4557 9 6 7.4970 -1.5907 2.9115 10 8 6.6833 -1.3195 3.7689 11 7 8.7319 -2.0025 3.2605 12 6 9.2249 -2.1666 4.6400 13 6 10.7644 -2.0338 4.5294 14 1 11.0644 -0.9866 4.4903 15 6 11.4624 -2.7586 5.6819 16 6 11.0419 -2.7426 3.1774 17 1 11.9565 -2.3619 2.7229 18 7 11.1170 -4.1944 3.3590 19 6 11.8297 -4.9591 2.4746 20 1 12.3369 -4.4919 1.6433 21 6 11.9014 -6.3346 2.6470 22 7 11.2838 -6.9039 3.6604 23 14 12.8731 -7.3779 1.4401 24 1 13.4682 -6.5038 0.3975 25 1 13.9556 -8.0925 2.1632 26 1 11.9686 -8.3667 0.8003 27 6 9.8108 -2.3615 2.3283 28 16 2.5061 -1.3904 -0.0074 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 5.9491 -0.1341 -0.5163 33 1 5.3861 -1.8227 -0.5175 34 1 7.7909 -0.7501 0.9723 35 1 7.2272 -2.4384 0.9714 36 1 8.9558 -3.1503 5.0247 37 1 8.8219 -1.3839 5.2826 38 1 12.5418 -2.7190 5.5354 39 1 11.2058 -2.2744 6.6241 40 1 11.1371 -3.7985 5.7073 41 1 10.6619 -4.6139 4.1059 42 1 11.3336 -7.8650 3.7806 43 1 10.0490 -1.5098 1.6913 44 1 9.5050 -3.2105 1.7168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327879874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = 6.789829 kcal Electronic energy + Delta-G solvation = -26547.070245 eV Core-core repulsion = 22627.781848 eV Total energy + Delta-G solvation = -3919.288396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60148 -39.94185 -38.36001 -37.19854 -34.00804 -33.74383 -32.49288 -30.88537 -30.53867 -28.55610 -27.76842 -26.85740 -25.37964 -24.53215 -23.88661 -22.14667 -20.31837 -19.68838 -19.34471 -19.14907 -17.68205 -17.31532 -16.66173 -16.48483 -16.02027 -15.72946 -15.49459 -14.86285 -14.69119 -14.43669 -14.00759 -13.78082 -13.59748 -13.51556 -13.19024 -13.13299 -12.92837 -12.83005 -12.35781 -12.24039 -11.99076 -11.94096 -11.59941 -11.16893 -10.99854 -10.83070 -10.78693 -10.58766 -10.50757 -10.28818 -10.13691 -10.05259 -9.99162 -9.95784 -9.74139 -9.58781 -9.08275 -8.32647 -7.13978 -5.90374 -3.20868 0.00473 0.53871 1.01440 2.13439 2.78027 2.82433 3.34246 3.40147 3.42755 3.49555 3.90449 4.22070 4.42212 4.46598 4.60613 4.69684 4.89341 4.91555 5.00572 5.03738 5.07924 5.11336 5.12911 5.18232 5.32479 5.41080 5.46556 5.57519 5.72770 5.87703 5.92632 6.12420 6.20878 6.28427 6.31963 6.45024 6.50309 6.67246 6.71731 6.91259 7.57812 7.77867 8.21963 8.27108 8.36635 9.39290 9.93667 10.28390 11.31570 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.002184 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.812589 B =12817.128901 C =13931.284355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 N -0.263 5.263 4 N -0.238 5.238 5 C -0.019 4.019 6 C 0.142 3.858 7 O -0.356 6.356 8 C 0.050 3.950 9 C 0.528 3.472 10 O -0.534 6.534 11 N -0.606 5.606 12 C 0.117 3.883 13 C -0.115 4.115 14 H 0.078 0.922 15 C -0.131 4.131 16 C 0.173 3.827 17 H 0.074 0.926 18 N -0.711 5.711 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.928 5.928 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.066 3.934 28 S 0.199 5.801 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.056 0.944 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 11.156 -8.112 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.299 4.299 3 N -0.102 5.102 4 N -0.078 5.078 5 C -0.298 4.298 6 C 0.062 3.938 7 O -0.274 6.274 8 C -0.029 4.029 9 C 0.315 3.685 10 O -0.410 6.410 11 N -0.341 5.341 12 C -0.005 4.005 13 C -0.136 4.136 14 H 0.097 0.903 15 C -0.189 4.189 16 C 0.060 3.940 17 H 0.092 0.908 18 N -0.352 5.352 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.205 4.205 22 N -0.575 5.575 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.060 4.060 28 S 0.443 5.557 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.223 0.777 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.145 11.595 -7.654 20.552 hybrid contribution 0.581 -0.799 -0.726 1.226 sum -14.564 10.796 -8.380 19.972 Atomic orbital electron populations 1.20411 0.83734 1.04957 1.04409 1.29347 1.04548 0.92148 1.03818 1.71493 0.96776 1.26783 1.15151 1.71425 1.06557 1.17061 1.12760 1.28676 1.02261 0.92773 1.06087 1.20668 0.86489 1.00924 0.85745 1.88045 1.27610 1.88038 1.23665 1.22241 0.83925 1.01055 0.95702 1.19641 0.81057 0.77763 0.90038 1.90713 1.48698 1.49866 1.51752 1.48345 1.11408 1.65282 1.09042 1.22272 0.93738 1.01638 0.82852 1.22657 0.93570 0.99850 0.97480 0.90325 1.21544 1.00529 1.01310 0.95481 1.21191 0.94151 0.86684 0.91975 0.90782 1.42455 1.60727 0.99486 1.32496 1.19275 1.24267 0.88962 1.05346 0.90895 1.24765 1.00680 0.96775 0.98312 1.69664 1.46989 1.10160 1.30706 0.86131 0.79318 0.80482 0.80272 1.20495 1.21818 1.21870 1.23387 0.89631 0.99297 0.93679 1.83759 0.97121 1.11074 1.63776 0.88978 0.89494 0.88661 0.89284 0.90076 0.89798 0.89531 0.91118 0.91193 0.92195 0.93699 0.90985 0.77729 0.93376 0.92533 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.48 36.01 0.38 -0.01 16 2 C -0.02 -0.20 7.53 -13.30 -0.10 -0.30 16 3 N -0.26 -3.47 11.66 32.58 0.38 -3.09 16 4 N -0.24 -3.38 11.66 32.58 0.38 -3.00 16 5 C -0.02 -0.23 7.16 -13.30 -0.10 -0.32 16 6 C 0.14 1.46 6.54 36.01 0.24 1.70 16 7 O -0.36 -5.06 9.86 -55.14 -0.54 -5.60 16 8 C 0.05 0.64 5.61 36.01 0.20 0.85 16 9 C 0.53 8.97 7.93 -10.98 -0.09 8.88 16 10 O -0.53 -11.18 16.75 -14.36 -0.24 -11.42 16 11 N -0.61 -9.84 3.33 -170.52 -0.57 -10.41 16 12 C 0.12 1.90 6.33 -2.53 -0.02 1.88 16 13 C -0.12 -1.73 3.51 -88.47 -0.31 -2.04 16 14 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.13 -2.00 8.91 37.16 0.33 -1.67 16 16 C 0.17 2.97 3.39 -66.09 -0.22 2.74 16 17 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 18 N -0.71 -15.73 4.48 -51.65 -0.23 -15.96 16 19 C -0.25 -6.19 9.96 -15.06 -0.15 -6.34 16 20 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 23 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.07 1.01 6.23 -3.06 -0.02 1.00 16 28 S 0.20 1.79 23.04 -107.50 -2.48 -0.69 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 37 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.29 6.40 -51.93 -0.33 0.96 16 41 H 0.39 9.33 6.27 -40.82 -0.26 9.07 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -34.26 384.35 -8.22 -42.48 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.46 Total: 5.49 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 0.05 Total: 6.04 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.69 Total: -58.07 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.78 Total: -17.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.48 Total: -0.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.26 -8.22 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327879874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.270 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds