Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29416 * 125.69110 * 2 1 4 4 N 1.26403 * 116.47388 * 180.02562 * 3 2 1 5 5 C 1.29412 * 116.47438 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.69751 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.47223 * 90.01969 * 6 5 4 8 8 C 1.42894 * 114.00076 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47209 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99605 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.47418 * 125.64758 * 179.97438 * 11 9 8 13 13 C 1.54915 * 104.83107 * 204.17202 * 12 11 9 14 14 H 1.09002 * 111.00539 * 81.06145 * 13 12 11 15 15 C 1.53001 * 111.03575 * 204.90180 * 13 12 11 16 16 C 1.55154 * 101.58176 * 322.98725 * 13 12 11 17 17 H 1.09004 * 110.72212 * 153.86391 * 16 13 12 18 18 N 1.46503 * 110.72283 * 277.14091 * 16 13 12 19 19 C 1.36931 * 120.00202 * 204.99811 * 18 16 13 20 20 H 1.08004 * 119.99589 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00349 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99947 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00285 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46956 * 120.00247 * 23 21 19 26 26 H 1.48497 * 109.47499 * 240.00407 * 23 21 19 27 27 C 1.47029 * 125.64745 * 0.02562 * 11 9 8 28 28 S 1.71210 * 125.69866 * 180.30646 * 2 1 3 29 29 H 1.08998 * 109.47292 * 89.97940 * 1 2 3 30 30 H 1.09005 * 109.46952 * 209.97278 * 1 2 3 31 31 H 1.09000 * 109.47296 * 329.97208 * 1 2 3 32 32 H 1.09001 * 109.46886 * 330.02114 * 6 5 4 33 33 H 1.08997 * 109.47053 * 210.01909 * 6 5 4 34 34 H 1.09005 * 109.47228 * 60.00267 * 8 7 6 35 35 H 1.08998 * 109.47530 * 299.99987 * 8 7 6 36 36 H 1.08995 * 110.37279 * 85.33616 * 12 11 9 37 37 H 1.08997 * 110.36990 * 323.00814 * 12 11 9 38 38 H 1.09000 * 109.47012 * 175.39412 * 15 13 12 39 39 H 1.08999 * 109.46864 * 295.38705 * 15 13 12 40 40 H 1.08992 * 109.47148 * 55.39463 * 15 13 12 41 41 H 0.96996 * 119.99702 * 24.99672 * 18 16 13 42 42 H 0.96993 * 120.00128 * 179.97438 * 22 21 19 43 43 H 1.08993 * 109.88066 * 59.47708 * 27 11 9 44 44 H 1.09003 * 109.87770 * 298.31367 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2620 1.0511 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8937 -0.3873 -0.0015 6 6 5.3233 -0.8639 -0.0028 7 8 5.7760 -1.0158 1.3441 8 6 7.1272 -1.4671 1.4557 9 6 7.4970 -1.5907 2.9115 10 8 6.6833 -1.3195 3.7689 11 7 8.7319 -2.0025 3.2605 12 6 9.2249 -2.1666 4.6400 13 6 10.7644 -2.0338 4.5294 14 1 11.0644 -0.9866 4.4903 15 6 11.4624 -2.7586 5.6819 16 6 11.0419 -2.7426 3.1774 17 1 11.9565 -2.3619 2.7229 18 7 11.1170 -4.1944 3.3590 19 6 11.8297 -4.9591 2.4746 20 1 12.3369 -4.4919 1.6433 21 6 11.9014 -6.3346 2.6470 22 7 11.2838 -6.9039 3.6604 23 14 12.8731 -7.3779 1.4401 24 1 13.4682 -6.5038 0.3975 25 1 13.9556 -8.0925 2.1632 26 1 11.9686 -8.3667 0.8003 27 6 9.8108 -2.3615 2.3283 28 16 2.5061 -1.3904 -0.0074 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 5.9491 -0.1341 -0.5163 33 1 5.3861 -1.8227 -0.5175 34 1 7.7909 -0.7501 0.9723 35 1 7.2272 -2.4384 0.9714 36 1 8.9558 -3.1503 5.0247 37 1 8.8219 -1.3839 5.2826 38 1 12.5418 -2.7190 5.5354 39 1 11.2058 -2.2744 6.6241 40 1 11.1371 -3.7985 5.7073 41 1 10.6619 -4.6139 4.1059 42 1 11.3336 -7.8650 3.7806 43 1 10.0490 -1.5098 1.6913 44 1 9.5050 -3.2105 1.7168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327879874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = -17.128147 kcal Electronic energy + Delta-G solvation = -26548.107406 eV Core-core repulsion = 22627.781848 eV Total energy + Delta-G solvation = -3920.325558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.42800 -41.22790 -39.48324 -38.44050 -35.69220 -34.46619 -33.95839 -32.25867 -31.56531 -29.61825 -29.24067 -27.69330 -26.50681 -25.71238 -25.28162 -23.50803 -21.11633 -20.70228 -20.49398 -20.35295 -19.39759 -18.41351 -17.82040 -17.49885 -17.09771 -16.76815 -16.57354 -16.24751 -15.94392 -15.74162 -15.38363 -14.92188 -14.56381 -14.47975 -14.38312 -14.12927 -13.97113 -13.63005 -13.46129 -13.34018 -13.19265 -13.05063 -12.96799 -12.85199 -12.78257 -12.31202 -12.05162 -11.95349 -11.58360 -11.44053 -11.38716 -11.37620 -11.07626 -10.93891 -10.88776 -10.79936 -10.68416 -9.67093 -8.98342 -7.89232 -5.17346 -0.74773 -0.17128 0.24899 1.27439 1.50806 1.51764 1.53416 1.61959 1.74766 2.60091 2.63086 3.09372 3.40035 3.42909 3.56477 3.72651 3.82281 3.91772 3.93987 4.06183 4.11020 4.14041 4.19167 4.28589 4.38850 4.44169 4.59495 4.62620 4.66816 4.69228 4.74651 4.89335 4.99985 5.02355 5.03978 5.19809 5.25453 5.35397 5.57565 5.63179 5.79535 6.31997 6.50663 7.07657 7.39680 7.40878 8.14131 8.36441 9.34189 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.002184 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.812589 B =12817.128901 C =13931.284355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.019 4.019 3 N -0.305 5.305 4 N -0.276 5.276 5 C -0.044 4.044 6 C 0.138 3.862 7 O -0.390 6.390 8 C 0.057 3.943 9 C 0.519 3.481 10 O -0.583 6.583 11 N -0.606 5.606 12 C 0.115 3.885 13 C -0.100 4.100 14 H 0.109 0.891 15 C -0.126 4.126 16 C 0.161 3.839 17 H 0.089 0.911 18 N -0.723 5.723 19 C -0.230 4.230 20 H 0.087 0.913 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.966 3.034 24 H -0.261 1.261 25 H -0.302 1.302 26 H -0.301 1.301 27 C 0.076 3.924 28 S 0.246 5.754 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.374 0.626 42 H 0.247 0.753 43 H 0.098 0.902 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.609 12.157 -10.132 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.297 4.297 3 N -0.144 5.144 4 N -0.116 5.116 5 C -0.323 4.323 6 C 0.059 3.941 7 O -0.309 6.309 8 C -0.022 4.022 9 C 0.308 3.692 10 O -0.464 6.464 11 N -0.339 5.339 12 C -0.008 4.008 13 C -0.120 4.120 14 H 0.127 0.873 15 C -0.184 4.184 16 C 0.051 3.949 17 H 0.107 0.893 18 N -0.362 5.362 19 C -0.361 4.361 20 H 0.104 0.896 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.230 1.230 26 H -0.229 1.229 27 C -0.049 4.049 28 S 0.490 5.510 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.207 0.793 42 H 0.056 0.944 43 H 0.117 0.883 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.036 12.654 -9.724 21.926 hybrid contribution 0.475 -1.050 -0.070 1.154 sum -14.562 11.604 -9.794 21.038 Atomic orbital electron populations 1.20686 0.80820 1.06122 1.06124 1.30049 1.06312 0.91868 1.01495 1.71443 0.96975 1.28534 1.17445 1.71366 1.07434 1.18706 1.14083 1.29011 1.03954 0.93031 1.06310 1.20964 0.85917 1.02931 0.84305 1.87988 1.28274 1.88416 1.26194 1.22288 0.84210 1.03147 0.92589 1.20492 0.80417 0.76577 0.91682 1.90684 1.49987 1.52111 1.53570 1.48445 1.11708 1.64707 1.09064 1.22232 0.94786 1.00367 0.83388 1.22610 0.92292 1.01074 0.96037 0.87251 1.21470 1.00354 0.99575 0.96955 1.21493 0.95568 0.84102 0.93720 0.89334 1.42628 1.60322 1.01571 1.31684 1.19707 1.22325 0.89124 1.04989 0.89557 1.25485 1.02788 0.98334 1.00189 1.69824 1.49651 1.09619 1.33013 0.85169 0.77560 0.78903 0.78685 1.18461 1.22965 1.22856 1.23239 0.88052 1.00507 0.93131 1.83510 0.95259 1.09602 1.62642 0.86794 0.87254 0.88501 0.87857 0.86968 0.86497 0.87401 0.93613 0.90953 0.92222 0.91514 0.94312 0.79287 0.94389 0.88347 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.48 71.24 0.75 0.11 16 2 C -0.02 -0.35 7.53 88.46 0.67 0.31 16 3 N -0.30 -8.05 11.66 -50.85 -0.59 -8.64 16 4 N -0.28 -7.85 11.66 -50.84 -0.59 -8.45 16 5 C -0.04 -1.00 7.16 88.47 0.63 -0.37 16 6 C 0.14 2.59 6.54 71.24 0.47 3.05 16 7 O -0.39 -10.55 9.86 -129.94 -1.28 -11.83 16 8 C 0.06 1.31 5.61 71.24 0.40 1.71 16 9 C 0.52 17.06 7.93 87.66 0.69 17.75 16 10 O -0.58 -24.63 16.75 16.00 0.27 -24.37 16 11 N -0.61 -18.72 3.33 -811.79 -2.70 -21.42 16 12 C 0.11 3.66 6.33 86.86 0.55 4.21 16 13 C -0.10 -2.81 3.51 -9.40 -0.03 -2.84 16 14 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 15 C -0.13 -3.74 8.91 71.98 0.64 -3.10 16 16 C 0.16 5.18 3.39 46.18 0.16 5.33 16 17 H 0.09 2.64 8.09 -2.39 -0.02 2.62 16 18 N -0.72 -31.55 4.48 -317.32 -1.42 -32.97 16 19 C -0.23 -11.23 9.96 84.03 0.84 -10.39 16 20 H 0.09 3.93 7.83 -2.91 -0.02 3.90 16 21 C -0.08 -4.03 5.50 84.86 0.47 -3.57 16 22 N -0.97 -56.49 13.06 21.65 0.28 -56.20 16 23 Si 0.97 43.20 29.55 68.60 2.03 45.23 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 27 C 0.08 2.10 6.23 86.73 0.54 2.64 16 28 S 0.25 4.04 23.04 -56.49 -1.30 2.74 16 29 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.68 8.03 -2.39 -0.02 1.66 16 37 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.42 6.40 -2.39 -0.02 1.40 16 41 H 0.37 18.39 6.27 -92.71 -0.58 17.80 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -77.83 384.35 1.89 -75.94 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.44 Total: 25.13 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.77 Total: 14.84 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -5.03 Total: -127.68 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.01 Total: -36.20 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.30 Total: 2.74 kcal Total: -77.83 1.89 -75.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327879874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.812 kcal (2) G-P(sol) polarization free energy of solvation -77.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds