Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50695 * 109.47016 * 2 1 4 4 N 1.31238 * 124.05184 * 270.02077 * 3 2 1 5 5 N 1.27335 * 120.03943 * 179.97438 * 4 3 2 6 6 S 1.56638 * 109.74038 * 359.70000 * 5 4 3 7 7 C 1.38239 * 124.05935 * 89.99903 * 3 2 1 8 8 C 1.47170 * 128.47747 * 0.02562 * 7 3 2 9 9 O 1.21627 * 119.99470 * 327.52845 * 8 7 3 10 10 N 1.34778 * 120.00595 * 147.52442 * 8 7 3 11 11 C 1.47157 * 120.97735 * 354.29377 * 10 8 7 12 12 C 1.53292 * 108.38313 * 230.54543 * 11 10 8 13 13 O 1.42955 * 109.22716 * 307.70167 * 12 11 10 14 14 C 1.42960 * 114.16496 * 62.58017 * 13 12 11 15 15 H 1.08995 * 109.51679 * 57.39907 * 14 13 12 16 16 C 1.53007 * 109.51361 * 177.49555 * 14 13 12 17 17 H 1.08996 * 109.47146 * 174.89773 * 16 14 13 18 18 C 1.53006 * 109.46878 * 54.89737 * 16 14 13 19 19 N 1.46496 * 109.46911 * 294.90201 * 16 14 13 20 20 C 1.36944 * 119.99759 * 204.99489 * 19 16 14 21 21 H 1.07992 * 119.99691 * 0.02562 * 20 19 16 22 22 C 1.38808 * 119.99921 * 179.97438 * 20 19 16 23 23 N 1.31621 * 120.00233 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46923 * 89.99976 * 24 22 20 26 26 H 1.48505 * 109.47255 * 210.00024 * 24 22 20 27 27 H 1.48495 * 109.47028 * 330.00530 * 24 22 20 28 28 C 1.47168 * 120.94462 * 174.34754 * 10 8 7 29 29 H 1.09000 * 109.46729 * 60.00383 * 1 2 3 30 30 H 1.08998 * 109.46588 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46914 * 300.00135 * 1 2 3 32 32 H 1.08997 * 109.46592 * 239.99426 * 2 1 3 33 33 H 1.09000 * 109.46729 * 119.99617 * 2 1 3 34 34 H 1.08999 * 109.67959 * 110.82568 * 11 10 8 35 35 H 1.09000 * 109.71268 * 350.29567 * 11 10 8 36 36 H 1.09000 * 109.50929 * 187.77149 * 12 11 10 37 37 H 1.09007 * 109.50764 * 67.62830 * 12 11 10 38 38 H 1.08995 * 109.47088 * 300.00488 * 18 16 14 39 39 H 1.08998 * 109.46928 * 60.00186 * 18 16 14 40 40 H 1.08994 * 109.46717 * 179.97438 * 18 16 14 41 41 H 0.96999 * 120.00500 * 24.99611 * 19 16 14 42 42 H 0.97001 * 120.00263 * 179.97438 * 23 22 20 43 43 H 1.08996 * 109.72888 * 9.75150 * 28 10 8 44 44 H 1.09006 * 109.63560 * 249.19703 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2770 2.1137 -1.0874 5 7 2.6999 3.3115 -0.9983 6 16 2.8342 3.7144 0.5095 7 6 2.2904 2.1507 1.1453 8 6 2.1437 1.7342 2.5491 9 8 1.2675 0.9510 2.8626 10 7 2.9802 2.2204 3.4874 11 6 4.1232 3.0696 3.1163 12 6 5.3824 2.5038 3.7827 13 8 5.1412 2.3400 5.1822 14 6 4.1026 1.4077 5.4918 15 1 4.3420 0.4378 5.0560 16 6 3.9769 1.2684 7.0103 17 1 3.1270 0.6283 7.2474 18 6 3.7645 2.6496 7.6333 19 7 5.2021 0.6729 7.5491 20 6 5.1666 -0.0120 8.7345 21 1 4.2353 -0.1135 9.2717 22 6 6.3274 -0.5768 9.2448 23 7 7.4623 -0.4536 8.5897 24 14 6.2788 -1.5117 10.8613 25 1 5.9942 -2.9448 10.5959 26 1 7.5909 -1.3860 11.5454 27 1 5.2127 -0.9475 11.7275 28 6 2.7774 1.9161 4.9129 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9511 4.0887 3.4625 35 1 4.2477 3.0660 2.0334 36 1 6.2137 3.1932 3.6347 37 1 5.6261 1.5381 3.3397 38 1 4.6143 3.2897 7.3962 39 1 2.8529 3.0928 7.2324 40 1 3.6745 2.5503 8.7150 41 1 6.0385 0.7636 7.0664 42 1 8.2735 -0.8479 8.9464 43 1 2.0113 1.1481 5.0199 44 1 2.4688 2.8190 5.4399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330405439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = 14.368201 kcal Electronic energy + Delta-G solvation = -27920.460351 eV Core-core repulsion = 24001.500577 eV Total energy + Delta-G solvation = -3918.959774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.40597 -40.43755 -38.54155 -35.68552 -34.82678 -34.67271 -32.61999 -31.09049 -30.32388 -28.76376 -28.15858 -26.93540 -25.02912 -24.20124 -23.63145 -23.02223 -21.66375 -19.79081 -19.55843 -18.94970 -17.72144 -17.22803 -16.74591 -16.31498 -16.08815 -15.54421 -15.36406 -14.93811 -14.69584 -14.65977 -14.39251 -14.19537 -13.54116 -13.41195 -13.32128 -13.01129 -12.87639 -12.65529 -12.43403 -12.41102 -12.10780 -11.75059 -11.44990 -11.28805 -11.21804 -10.92984 -10.78588 -10.73475 -10.56669 -10.43578 -10.30292 -10.12265 -10.09455 -9.93145 -9.89579 -9.69424 -8.92858 -8.72354 -6.97094 -5.76464 -3.05584 -0.61848 0.36436 1.09022 1.59736 2.34220 2.60526 3.43213 3.47253 3.48600 3.50133 3.81259 3.96086 4.20273 4.48829 4.58428 4.61756 4.75410 4.89594 4.98844 5.00225 5.01666 5.18461 5.26680 5.44743 5.52287 5.56065 5.57230 5.63616 5.67431 5.77445 5.83976 5.91923 5.99124 6.05002 6.21060 6.39538 6.58502 6.76405 6.87748 7.10830 7.28900 7.34785 7.63366 7.69182 8.41572 9.53654 10.10338 10.46671 11.45859 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002659 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.333353 B =10527.894328 C =11068.596901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C 0.101 3.899 4 N -0.246 5.246 5 N -0.263 5.263 6 S 0.424 5.576 7 C -0.289 4.289 8 C 0.602 3.398 9 O -0.508 6.508 10 N -0.603 5.603 11 C 0.062 3.938 12 C 0.049 3.951 13 O -0.354 6.354 14 C 0.074 3.926 15 H 0.066 0.934 16 C 0.185 3.815 17 H 0.061 0.939 18 C -0.163 4.163 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.085 3.915 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.034 0.966 40 H 0.053 0.947 41 H 0.389 0.611 42 H 0.255 0.745 43 H 0.106 0.894 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 8.882 -18.112 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.046 4.046 4 N -0.111 5.111 5 N -0.242 5.242 6 S 0.561 5.439 7 C -0.429 4.429 8 C 0.387 3.613 9 O -0.383 6.383 10 N -0.337 5.337 11 C -0.062 4.062 12 C -0.029 4.029 13 O -0.272 6.272 14 C 0.015 3.985 15 H 0.084 0.916 16 C 0.075 3.925 17 H 0.078 0.922 18 C -0.223 4.223 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.037 4.037 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.223 0.777 42 H 0.065 0.935 43 H 0.124 0.876 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.489 10.021 -18.782 23.732 hybrid contribution -0.086 -1.628 0.977 1.900 sum -10.575 8.393 -17.805 22.345 Atomic orbital electron populations 1.21705 0.92960 1.02881 1.02615 1.20204 0.97317 0.86228 1.04525 1.22955 0.96743 0.99845 0.85064 1.70637 1.13549 0.99092 1.27866 1.78817 1.18361 1.10593 1.16472 1.82734 1.45991 1.14557 1.00593 1.27722 1.14694 1.00537 0.99979 1.16482 0.82044 0.80894 0.81893 1.90849 1.33828 1.33375 1.80283 1.48017 1.27566 1.50544 1.07561 1.22813 0.87453 0.95760 1.00166 1.22873 0.95343 1.01105 0.83584 1.88130 1.55222 1.63007 1.20821 1.23028 0.85253 0.91788 0.98431 0.91577 1.20195 0.92022 0.93679 0.86648 0.92168 1.22428 0.99627 0.99048 1.01217 1.42350 1.05502 1.63278 1.24923 1.19235 0.94464 1.25746 0.97690 0.91141 1.24739 0.95597 1.01501 0.99005 1.69675 0.98823 1.49772 1.39578 0.86209 0.76741 0.79844 0.83490 1.21749 1.21809 1.20752 1.22645 1.00027 1.03251 0.77761 0.92604 0.91226 0.91397 0.89228 0.88722 0.89147 0.90344 0.87349 0.92618 0.92386 0.94677 0.92802 0.77662 0.93540 0.87617 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.04 -0.39 5.87 -27.88 -0.16 -0.55 16 3 C 0.10 1.09 6.25 -82.85 -0.52 0.57 16 4 N -0.25 -2.86 11.54 33.42 0.39 -2.47 16 5 N -0.26 -2.86 12.51 60.35 0.75 -2.10 16 6 S 0.42 3.52 20.46 -107.50 -2.20 1.32 16 7 C -0.29 -3.05 5.92 -35.96 -0.21 -3.26 16 8 C 0.60 7.35 7.44 -12.63 -0.09 7.25 16 9 O -0.51 -7.39 14.96 5.25 0.08 -7.31 16 10 N -0.60 -6.91 3.02 -173.63 -0.52 -7.43 16 11 C 0.06 0.57 5.85 -3.53 -0.02 0.55 16 12 C 0.05 0.55 6.98 37.31 0.26 0.81 16 13 O -0.35 -5.47 9.24 -35.23 -0.33 -5.80 16 14 C 0.07 1.17 2.60 -26.58 -0.07 1.10 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 16 C 0.19 3.49 2.77 -67.93 -0.19 3.30 16 17 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 18 C -0.16 -2.81 9.06 37.16 0.34 -2.47 16 19 N -0.72 -17.60 5.10 -53.42 -0.27 -17.87 16 20 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 24 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.08 1.09 5.84 -3.53 -0.02 1.07 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.70 7.62 -51.93 -0.40 0.30 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.59 4.44 -34.68 -0.15 0.44 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.06 1.05 7.56 -51.93 -0.39 0.66 16 39 H 0.03 0.49 6.42 -51.93 -0.33 0.15 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.39 10.31 7.58 -40.82 -0.31 10.01 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.11 1.41 7.06 -51.93 -0.37 1.04 16 44 H 0.09 1.04 6.27 -51.93 -0.33 0.71 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -32.32 368.41 -7.43 -39.75 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.01 Total: 6.03 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.57 Total: 0.35 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 1.07 Total: -56.99 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.25 Total: -13.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.20 Total: 1.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.32 -7.43 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330405439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.118 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds