Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50695 * 109.47016 * 2 1 4 4 N 1.31238 * 124.05184 * 270.02077 * 3 2 1 5 5 N 1.27335 * 120.03943 * 179.97438 * 4 3 2 6 6 S 1.56638 * 109.74038 * 359.70000 * 5 4 3 7 7 C 1.38239 * 124.05935 * 89.99903 * 3 2 1 8 8 C 1.47170 * 128.47747 * 0.02562 * 7 3 2 9 9 O 1.21627 * 119.99470 * 327.52845 * 8 7 3 10 10 N 1.34778 * 120.00595 * 147.52442 * 8 7 3 11 11 C 1.47157 * 120.97735 * 354.29377 * 10 8 7 12 12 C 1.53292 * 108.38313 * 230.54543 * 11 10 8 13 13 O 1.42955 * 109.22716 * 307.70167 * 12 11 10 14 14 C 1.42960 * 114.16496 * 62.58017 * 13 12 11 15 15 H 1.08995 * 109.51679 * 57.39907 * 14 13 12 16 16 C 1.53007 * 109.51361 * 177.49555 * 14 13 12 17 17 H 1.08996 * 109.47146 * 174.89773 * 16 14 13 18 18 C 1.53006 * 109.46878 * 54.89737 * 16 14 13 19 19 N 1.46496 * 109.46911 * 294.90201 * 16 14 13 20 20 C 1.36944 * 119.99759 * 204.99489 * 19 16 14 21 21 H 1.07992 * 119.99691 * 0.02562 * 20 19 16 22 22 C 1.38808 * 119.99921 * 179.97438 * 20 19 16 23 23 N 1.31621 * 120.00233 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46923 * 89.99976 * 24 22 20 26 26 H 1.48505 * 109.47255 * 210.00024 * 24 22 20 27 27 H 1.48495 * 109.47028 * 330.00530 * 24 22 20 28 28 C 1.47168 * 120.94462 * 174.34754 * 10 8 7 29 29 H 1.09000 * 109.46729 * 60.00383 * 1 2 3 30 30 H 1.08998 * 109.46588 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46914 * 300.00135 * 1 2 3 32 32 H 1.08997 * 109.46592 * 239.99426 * 2 1 3 33 33 H 1.09000 * 109.46729 * 119.99617 * 2 1 3 34 34 H 1.08999 * 109.67959 * 110.82568 * 11 10 8 35 35 H 1.09000 * 109.71268 * 350.29567 * 11 10 8 36 36 H 1.09000 * 109.50929 * 187.77149 * 12 11 10 37 37 H 1.09007 * 109.50764 * 67.62830 * 12 11 10 38 38 H 1.08995 * 109.47088 * 300.00488 * 18 16 14 39 39 H 1.08998 * 109.46928 * 60.00186 * 18 16 14 40 40 H 1.08994 * 109.46717 * 179.97438 * 18 16 14 41 41 H 0.96999 * 120.00500 * 24.99611 * 19 16 14 42 42 H 0.97001 * 120.00263 * 179.97438 * 23 22 20 43 43 H 1.08996 * 109.72888 * 9.75150 * 28 10 8 44 44 H 1.09006 * 109.63560 * 249.19703 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2770 2.1137 -1.0874 5 7 2.6999 3.3115 -0.9983 6 16 2.8342 3.7144 0.5095 7 6 2.2904 2.1507 1.1453 8 6 2.1437 1.7342 2.5491 9 8 1.2675 0.9510 2.8626 10 7 2.9802 2.2204 3.4874 11 6 4.1232 3.0696 3.1163 12 6 5.3824 2.5038 3.7827 13 8 5.1412 2.3400 5.1822 14 6 4.1026 1.4077 5.4918 15 1 4.3420 0.4378 5.0560 16 6 3.9769 1.2684 7.0103 17 1 3.1270 0.6283 7.2474 18 6 3.7645 2.6496 7.6333 19 7 5.2021 0.6729 7.5491 20 6 5.1666 -0.0120 8.7345 21 1 4.2353 -0.1135 9.2717 22 6 6.3274 -0.5768 9.2448 23 7 7.4623 -0.4536 8.5897 24 14 6.2788 -1.5117 10.8613 25 1 5.9942 -2.9448 10.5959 26 1 7.5909 -1.3860 11.5454 27 1 5.2127 -0.9475 11.7275 28 6 2.7774 1.9161 4.9129 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9511 4.0887 3.4625 35 1 4.2477 3.0660 2.0334 36 1 6.2137 3.1932 3.6347 37 1 5.6261 1.5381 3.3397 38 1 4.6143 3.2897 7.3962 39 1 2.8529 3.0928 7.2324 40 1 3.6745 2.5503 8.7150 41 1 6.0385 0.7636 7.0664 42 1 8.2735 -0.8479 8.9464 43 1 2.0113 1.1481 5.0199 44 1 2.4688 2.8190 5.4399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330405439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -8.475589 kcal Electronic energy + Delta-G solvation = -27921.450932 eV Core-core repulsion = 24001.500577 eV Total energy + Delta-G solvation = -3919.950355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.22854 -41.41828 -39.64184 -37.15626 -35.91069 -35.49582 -34.33826 -32.24160 -31.46605 -30.04183 -29.29571 -27.97965 -26.45176 -25.27666 -24.80024 -24.11183 -22.68169 -21.18410 -20.45162 -19.73986 -19.27905 -18.50332 -17.79516 -17.22500 -17.17118 -16.80876 -16.40369 -16.15486 -15.85169 -15.75014 -15.46056 -15.16538 -15.09349 -14.58651 -14.44481 -14.11714 -13.98555 -13.70435 -13.59399 -13.32613 -13.19371 -13.02516 -12.82996 -12.45257 -12.44047 -12.39957 -12.16660 -12.01972 -11.91314 -11.67640 -11.61829 -11.40015 -11.23536 -11.16699 -10.93148 -10.91042 -10.68844 -9.73379 -8.98067 -7.90308 -5.18476 -1.41545 -0.39378 0.33187 0.77472 1.41452 1.49497 1.50515 1.58808 1.70673 2.58441 2.68782 2.74611 3.12033 3.42829 3.43910 3.54321 3.76434 3.87082 3.98008 4.00500 4.04660 4.20457 4.28387 4.29657 4.37354 4.46405 4.56800 4.64697 4.74172 4.76177 4.77229 4.96124 4.97111 5.05540 5.07914 5.14386 5.29471 5.30635 5.54646 5.67272 5.96897 6.21858 6.31609 6.50817 6.70518 7.38114 8.14425 8.38054 9.33173 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002659 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.333353 B =10527.894328 C =11068.596901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C 0.098 3.902 4 N -0.267 5.267 5 N -0.288 5.288 6 S 0.512 5.488 7 C -0.313 4.313 8 C 0.604 3.396 9 O -0.537 6.537 10 N -0.603 5.603 11 C 0.065 3.935 12 C 0.042 3.958 13 O -0.376 6.376 14 C 0.087 3.913 15 H 0.042 0.958 16 C 0.176 3.824 17 H 0.061 0.939 18 C -0.150 4.150 19 N -0.733 5.733 20 C -0.236 4.236 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.970 3.030 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.269 1.269 28 C 0.096 3.904 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.099 0.901 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 10.505 -18.762 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 C -0.050 4.050 4 N -0.132 5.132 5 N -0.269 5.269 6 S 0.649 5.351 7 C -0.453 4.453 8 C 0.390 3.610 9 O -0.415 6.415 10 N -0.336 5.336 11 C -0.058 4.058 12 C -0.036 4.036 13 O -0.295 6.295 14 C 0.028 3.972 15 H 0.060 0.940 16 C 0.067 3.933 17 H 0.079 0.921 18 C -0.209 4.209 19 N -0.373 5.373 20 C -0.368 4.368 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.799 3.201 25 H -0.216 1.216 26 H -0.225 1.225 27 H -0.193 1.193 28 C -0.026 4.026 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.117 0.883 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.578 11.679 -19.459 25.477 hybrid contribution 0.231 -2.025 1.113 2.322 sum -11.347 9.654 -18.346 23.633 Atomic orbital electron populations 1.21653 0.92559 1.03552 1.01814 1.20252 0.97628 0.85876 1.04682 1.23141 0.96390 1.00338 0.85082 1.70698 1.14701 0.99446 1.28326 1.78580 1.18944 1.10680 1.18646 1.82336 1.43059 1.11609 0.98078 1.27630 1.16163 1.02444 0.99096 1.16616 0.81629 0.80302 0.82440 1.90833 1.35110 1.34628 1.80894 1.48038 1.28063 1.50662 1.06880 1.22963 0.85501 0.96375 1.00968 1.23147 0.97344 1.01574 0.81487 1.88084 1.55284 1.62511 1.23608 1.22618 0.87153 0.91296 0.96136 0.94030 1.20447 0.89741 0.94230 0.88873 0.92083 1.22229 1.01090 0.97638 0.99950 1.42541 1.06808 1.63652 1.24347 1.19640 0.94482 1.24448 0.98245 0.90446 1.25522 0.95508 1.03416 1.02460 1.69832 0.99275 1.51614 1.41300 0.85192 0.76543 0.78450 0.79902 1.21636 1.22473 1.19344 1.22414 0.97742 1.03701 0.78761 0.92253 0.89880 0.93173 0.87868 0.89680 0.86404 0.88749 0.84710 0.93619 0.93407 0.90729 0.94592 0.79280 0.94214 0.88262 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.90 71.99 0.71 -1.63 16 2 C -0.04 -0.79 5.87 29.85 0.18 -0.62 16 3 C 0.10 2.02 6.25 42.65 0.27 2.29 16 4 N -0.27 -5.86 11.54 -48.19 -0.56 -6.42 16 5 N -0.29 -5.70 12.51 37.02 0.46 -5.24 16 6 S 0.51 7.01 20.46 -56.49 -1.16 5.85 16 7 C -0.31 -6.09 5.92 24.62 0.15 -5.95 16 8 C 0.60 13.96 7.44 86.59 0.64 14.60 16 9 O -0.54 -15.42 14.96 -4.12 -0.06 -15.49 16 10 N -0.60 -12.63 3.02 -821.48 -2.48 -15.12 16 11 C 0.06 0.99 5.85 86.35 0.51 1.49 16 12 C 0.04 0.85 6.98 72.08 0.50 1.36 16 13 O -0.38 -11.27 9.24 -148.98 -1.38 -12.64 16 14 C 0.09 2.71 2.60 30.69 0.08 2.79 16 15 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 16 C 0.18 6.56 2.77 45.00 0.12 6.69 16 17 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 18 C -0.15 -4.93 9.06 71.98 0.65 -4.27 16 19 N -0.73 -36.44 5.10 -322.94 -1.65 -38.09 16 20 C -0.24 -12.93 9.93 84.03 0.83 -12.09 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 24 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.10 2.30 5.84 86.35 0.50 2.81 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.03 7.62 -2.39 -0.02 1.01 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.70 7.42 -2.39 -0.02 1.68 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.11 4.44 -13.35 -0.06 1.06 16 36 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 39 H 0.07 1.85 6.42 -2.39 -0.02 1.83 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.38 20.46 7.58 -92.71 -0.70 19.76 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.10 2.55 7.06 -2.39 -0.02 2.53 16 44 H 0.11 2.16 6.27 -2.38 -0.01 2.15 16 Total: -1.00 -71.27 368.41 1.40 -69.87 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.29 Total: 24.83 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.62 Total: 3.53 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -3.94 Total: -123.97 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.44 Total: -28.13 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.16 Total: 5.85 kcal Total: -71.27 1.40 -69.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330405439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.397 kcal (2) G-P(sol) polarization free energy of solvation -71.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds