Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29415 * 125.70066 * 2 1 4 4 N 1.26402 * 116.47734 * 179.74653 * 3 2 1 5 5 C 1.29412 * 116.47369 * 0.53510 * 4 3 2 6 6 C 1.50694 * 125.69610 * 179.76922 * 5 4 3 7 7 O 1.42899 * 109.47233 * 89.68891 * 6 5 4 8 8 C 1.42910 * 114.00210 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47238 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99962 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.47421 * 125.64845 * 0.04157 * 11 9 8 13 13 C 1.54912 * 104.83028 * 155.83337 * 12 11 9 14 14 C 1.55158 * 101.58079 * 37.01434 * 13 12 11 15 15 H 1.08994 * 110.87663 * 82.92802 * 14 13 12 16 16 N 1.46506 * 110.71680 * 206.13374 * 14 13 12 17 17 C 1.36938 * 119.99629 * 268.51729 * 16 14 13 18 18 H 1.07998 * 120.00011 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99969 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99451 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00030 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47019 * 90.00089 * 21 19 17 23 23 H 1.48501 * 109.46818 * 209.99874 * 21 19 17 24 24 H 1.48494 * 109.46891 * 329.99877 * 21 19 17 25 25 C 1.47023 * 125.64779 * 179.97438 * 11 9 8 26 26 H 1.09001 * 109.88477 * 300.51183 * 25 11 9 27 27 C 1.53000 * 110.01077 * 61.60403 * 25 11 9 28 28 S 1.71222 * 125.69426 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47077 * 269.96357 * 1 2 3 30 30 H 1.09006 * 109.46545 * 29.96214 * 1 2 3 31 31 H 1.08995 * 109.47112 * 149.96168 * 1 2 3 32 32 H 1.09002 * 109.47227 * 329.69156 * 6 5 4 33 33 H 1.09003 * 109.47569 * 209.68841 * 6 5 4 34 34 H 1.08997 * 109.46551 * 60.00168 * 8 7 6 35 35 H 1.08998 * 109.46903 * 300.00527 * 8 7 6 36 36 H 1.08991 * 110.36643 * 274.67376 * 12 11 9 37 37 H 1.09002 * 110.36737 * 36.99788 * 12 11 9 38 38 H 1.08990 * 111.00885 * 278.93170 * 13 12 11 39 39 H 1.09010 * 110.99879 * 155.08364 * 13 12 11 40 40 H 0.96995 * 119.99814 * 88.51710 * 16 14 13 41 41 H 0.97000 * 119.99482 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.46984 * 177.88752 * 27 25 11 43 43 H 1.08996 * 109.47498 * 297.88210 * 27 25 11 44 44 H 1.09002 * 109.47023 * 57.89006 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8484 0.0050 5 6 3.8937 -0.3875 -0.0012 6 6 5.3232 -0.8643 -0.0021 7 8 5.7757 -1.0154 1.3449 8 6 7.1270 -1.4667 1.4570 9 6 7.4962 -1.5906 2.9128 10 8 6.6820 -1.3196 3.7700 11 7 8.7309 -2.0026 3.2622 12 6 9.8132 -2.3620 2.3280 13 6 11.1191 -2.1520 3.1343 14 6 10.6921 -2.6276 4.5481 15 1 10.7622 -3.7121 4.6308 16 7 11.5031 -1.9774 5.5806 17 6 12.6530 -2.5740 6.0245 18 1 12.9621 -3.5235 5.6133 19 6 13.4212 -1.9582 7.0031 20 7 13.0440 -0.8012 7.5046 21 14 14.9901 -2.7717 7.6082 22 1 16.1345 -2.3198 6.7766 23 1 15.2284 -2.3950 9.0248 24 1 14.8547 -4.2468 7.5042 25 6 9.2221 -2.1666 4.6382 26 1 9.1633 -1.2161 5.1686 27 6 8.3898 -3.2222 5.3689 28 16 2.5060 -1.3906 -0.0006 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3632 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5144 32 1 5.9492 -0.1348 -0.5159 33 1 5.3861 -1.8234 -0.5162 34 1 7.7907 -0.7500 0.9733 35 1 7.2269 -2.4383 0.9732 36 1 9.7197 -3.4039 2.0219 37 1 9.7957 -1.7068 1.4570 38 1 11.4065 -1.1008 3.1459 39 1 11.9252 -2.7714 2.7407 40 1 11.2255 -1.1244 5.9496 41 1 13.5810 -0.3708 8.1881 42 1 8.7846 -3.3637 6.3750 43 1 7.3534 -2.8902 5.4288 44 1 8.4386 -4.1647 4.8236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331901822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = 7.369457 kcal Electronic energy + Delta-G solvation = -26373.413794 eV Core-core repulsion = 22454.150532 eV Total energy + Delta-G solvation = -3919.263262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67168 -40.11079 -38.40764 -37.09795 -34.17429 -33.81536 -31.88299 -31.03650 -30.80525 -29.45911 -27.86190 -26.60812 -25.25308 -24.66752 -23.08440 -22.50029 -20.42395 -20.22692 -19.75894 -18.95350 -17.56591 -17.21942 -16.82647 -16.63036 -16.11414 -15.81110 -15.60468 -14.96717 -14.69153 -14.19384 -14.01754 -13.65613 -13.60682 -13.58143 -13.43336 -13.15690 -12.98200 -12.76355 -12.57078 -12.20355 -12.10781 -11.89022 -11.65878 -11.20162 -11.06225 -10.87828 -10.86091 -10.65803 -10.62427 -10.28588 -10.20610 -10.16093 -10.06873 -10.03692 -9.80067 -9.55814 -8.97938 -8.46796 -7.06997 -5.84349 -3.15229 -0.06608 0.46148 0.93169 2.06650 2.68334 2.68877 3.38382 3.39242 3.44474 3.46436 3.79895 4.11897 4.31133 4.50342 4.52155 4.59147 4.78771 4.82676 4.87575 4.89961 4.97805 5.02323 5.10729 5.19199 5.30177 5.35741 5.43886 5.51882 5.62797 5.75299 5.88760 6.04558 6.09029 6.25061 6.40638 6.46203 6.54161 6.59658 6.73449 6.87320 7.62436 7.66905 8.15782 8.27876 8.32908 9.44235 9.98365 10.32945 11.37654 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.001779 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.165748 B =15732.407163 C =15871.680824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 N -0.262 5.262 4 N -0.236 5.236 5 C -0.021 4.021 6 C 0.143 3.857 7 O -0.355 6.355 8 C 0.050 3.950 9 C 0.527 3.473 10 O -0.521 6.521 11 N -0.608 5.608 12 C 0.095 3.905 13 C -0.157 4.157 14 C 0.177 3.823 15 H 0.069 0.931 16 N -0.714 5.714 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.127 3.873 26 H 0.078 0.922 27 C -0.154 4.154 28 S 0.195 5.805 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 -5.148 -21.119 30.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.296 4.296 3 N -0.101 5.101 4 N -0.076 5.076 5 C -0.300 4.300 6 C 0.063 3.937 7 O -0.272 6.272 8 C -0.030 4.030 9 C 0.314 3.686 10 O -0.396 6.396 11 N -0.345 5.345 12 C -0.028 4.028 13 C -0.198 4.198 14 C 0.065 3.935 15 H 0.086 0.914 16 N -0.354 5.354 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.024 3.976 26 H 0.096 0.904 27 C -0.212 4.212 28 S 0.438 5.562 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.276 -4.692 -20.415 29.858 hybrid contribution 1.129 0.006 0.203 1.147 sum -20.147 -4.686 -20.212 28.921 Atomic orbital electron populations 1.20424 0.83690 1.04806 1.04662 1.29363 1.04564 0.92020 1.03619 1.71502 0.96755 1.26740 1.15117 1.71428 1.06574 1.17057 1.12499 1.28670 1.02172 0.92793 1.06335 1.20660 0.86621 1.00806 0.85659 1.88073 1.27418 1.88018 1.23712 1.22259 0.84227 1.00745 0.95771 1.19636 0.81129 0.77900 0.89977 1.90735 1.48606 1.48662 1.51598 1.48490 1.11135 1.65888 1.08947 1.22441 0.87775 0.99756 0.92817 1.23585 0.94752 1.03006 0.98441 1.21243 0.87094 0.96671 0.88510 0.91356 1.42355 1.25162 1.24287 1.43575 1.19210 0.98746 1.03095 1.16651 0.90949 1.24779 0.99360 0.97151 0.99316 1.69668 1.39794 1.16814 1.31327 0.86174 0.83336 0.78560 0.77977 1.21654 1.21731 1.20687 1.21988 0.95000 0.99686 0.80939 0.90394 1.22041 1.00513 0.97826 1.00845 1.83680 0.97220 1.11261 1.64005 0.88806 0.88644 0.89533 0.89246 0.90203 0.89724 0.89903 0.91481 0.91364 0.90565 0.90435 0.77945 0.93328 0.91024 0.92034 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.48 36.00 0.38 0.04 16 2 C -0.02 -0.16 7.53 -13.30 -0.10 -0.26 16 3 N -0.26 -3.30 11.66 32.58 0.38 -2.92 16 4 N -0.24 -3.18 11.66 32.58 0.38 -2.80 16 5 C -0.02 -0.22 7.16 -13.30 -0.10 -0.32 16 6 C 0.14 1.24 6.53 36.00 0.24 1.48 16 7 O -0.35 -4.48 9.86 -55.14 -0.54 -5.02 16 8 C 0.05 0.53 5.42 36.00 0.20 0.72 16 9 C 0.53 8.12 7.72 -10.99 -0.08 8.04 16 10 O -0.52 -10.39 15.56 -14.36 -0.22 -10.61 16 11 N -0.61 -9.00 3.07 -163.02 -0.50 -9.50 16 12 C 0.10 1.11 6.69 -2.53 -0.02 1.10 16 13 C -0.16 -2.39 6.77 -24.58 -0.17 -2.56 16 14 C 0.18 3.27 3.14 -66.09 -0.21 3.06 16 15 H 0.07 1.26 7.80 -51.93 -0.40 0.85 16 16 N -0.71 -17.01 5.22 -51.65 -0.27 -17.27 16 17 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 21 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.13 2.22 3.20 -66.95 -0.21 2.01 16 26 H 0.08 1.56 7.72 -51.93 -0.40 1.16 16 27 C -0.15 -2.57 9.10 37.16 0.34 -2.23 16 28 S 0.19 1.51 23.04 -107.50 -2.48 -0.97 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.62 7.47 -51.93 -0.39 0.23 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.39 10.02 7.56 -40.82 -0.31 9.71 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -35.89 384.22 -8.21 -44.10 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.46 Total: 5.16 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 0.01 Total: 4.09 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.71 Total: -59.21 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.77 Total: -15.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.48 Total: -0.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.89 -8.21 -44.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331901822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.468 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds