Wall clock time and date at job start Sat Apr 11 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29415 * 125.70066 * 2 1 4 4 N 1.26402 * 116.47734 * 179.74653 * 3 2 1 5 5 C 1.29412 * 116.47369 * 0.53510 * 4 3 2 6 6 C 1.50694 * 125.69610 * 179.76922 * 5 4 3 7 7 O 1.42899 * 109.47233 * 89.68891 * 6 5 4 8 8 C 1.42910 * 114.00210 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47238 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99962 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.47421 * 125.64845 * 0.04157 * 11 9 8 13 13 C 1.54912 * 104.83028 * 155.83337 * 12 11 9 14 14 C 1.55158 * 101.58079 * 37.01434 * 13 12 11 15 15 H 1.08994 * 110.87663 * 82.92802 * 14 13 12 16 16 N 1.46506 * 110.71680 * 206.13374 * 14 13 12 17 17 C 1.36938 * 119.99629 * 268.51729 * 16 14 13 18 18 H 1.07998 * 120.00011 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99969 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99451 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00030 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47019 * 90.00089 * 21 19 17 23 23 H 1.48501 * 109.46818 * 209.99874 * 21 19 17 24 24 H 1.48494 * 109.46891 * 329.99877 * 21 19 17 25 25 C 1.47023 * 125.64779 * 179.97438 * 11 9 8 26 26 H 1.09001 * 109.88477 * 300.51183 * 25 11 9 27 27 C 1.53000 * 110.01077 * 61.60403 * 25 11 9 28 28 S 1.71222 * 125.69426 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47077 * 269.96357 * 1 2 3 30 30 H 1.09006 * 109.46545 * 29.96214 * 1 2 3 31 31 H 1.08995 * 109.47112 * 149.96168 * 1 2 3 32 32 H 1.09002 * 109.47227 * 329.69156 * 6 5 4 33 33 H 1.09003 * 109.47569 * 209.68841 * 6 5 4 34 34 H 1.08997 * 109.46551 * 60.00168 * 8 7 6 35 35 H 1.08998 * 109.46903 * 300.00527 * 8 7 6 36 36 H 1.08991 * 110.36643 * 274.67376 * 12 11 9 37 37 H 1.09002 * 110.36737 * 36.99788 * 12 11 9 38 38 H 1.08990 * 111.00885 * 278.93170 * 13 12 11 39 39 H 1.09010 * 110.99879 * 155.08364 * 13 12 11 40 40 H 0.96995 * 119.99814 * 88.51710 * 16 14 13 41 41 H 0.97000 * 119.99482 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.46984 * 177.88752 * 27 25 11 43 43 H 1.08996 * 109.47498 * 297.88210 * 27 25 11 44 44 H 1.09002 * 109.47023 * 57.89006 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8484 0.0050 5 6 3.8937 -0.3875 -0.0012 6 6 5.3232 -0.8643 -0.0021 7 8 5.7757 -1.0154 1.3449 8 6 7.1270 -1.4667 1.4570 9 6 7.4962 -1.5906 2.9128 10 8 6.6820 -1.3196 3.7700 11 7 8.7309 -2.0026 3.2622 12 6 9.8132 -2.3620 2.3280 13 6 11.1191 -2.1520 3.1343 14 6 10.6921 -2.6276 4.5481 15 1 10.7622 -3.7121 4.6308 16 7 11.5031 -1.9774 5.5806 17 6 12.6530 -2.5740 6.0245 18 1 12.9621 -3.5235 5.6133 19 6 13.4212 -1.9582 7.0031 20 7 13.0440 -0.8012 7.5046 21 14 14.9901 -2.7717 7.6082 22 1 16.1345 -2.3198 6.7766 23 1 15.2284 -2.3950 9.0248 24 1 14.8547 -4.2468 7.5042 25 6 9.2221 -2.1666 4.6382 26 1 9.1633 -1.2161 5.1686 27 6 8.3898 -3.2222 5.3689 28 16 2.5060 -1.3906 -0.0006 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3632 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5144 32 1 5.9492 -0.1348 -0.5159 33 1 5.3861 -1.8234 -0.5162 34 1 7.7907 -0.7500 0.9733 35 1 7.2269 -2.4383 0.9732 36 1 9.7197 -3.4039 2.0219 37 1 9.7957 -1.7068 1.4570 38 1 11.4065 -1.1008 3.1459 39 1 11.9252 -2.7714 2.7407 40 1 11.2255 -1.1244 5.9496 41 1 13.5810 -0.3708 8.1881 42 1 8.7846 -3.3637 6.3750 43 1 7.3534 -2.8902 5.4288 44 1 8.4386 -4.1647 4.8236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331901822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:21 Heat of formation + Delta-G solvation = -19.110135 kcal Electronic energy + Delta-G solvation = -26374.562035 eV Core-core repulsion = 22454.150532 eV Total energy + Delta-G solvation = -3920.411503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.41317 -41.30148 -39.37965 -38.29925 -35.91744 -34.44657 -33.48478 -32.34659 -31.57769 -30.91892 -28.76332 -27.34456 -26.84582 -25.30696 -24.78860 -23.68867 -21.67818 -21.08414 -20.45641 -20.17935 -19.14627 -18.40092 -17.77896 -17.58024 -17.07531 -16.74353 -16.54623 -16.33465 -15.90086 -15.41402 -15.36618 -14.86853 -14.71392 -14.55593 -14.32391 -14.08674 -13.94237 -13.60681 -13.45793 -13.39063 -13.17765 -13.07475 -12.95713 -12.89818 -12.66192 -12.50994 -12.13998 -12.10558 -11.71383 -11.56462 -11.53679 -11.34951 -10.99213 -10.90395 -10.83421 -10.73892 -10.66528 -9.68904 -9.02302 -7.93570 -5.23678 -0.72107 -0.14648 0.25866 1.29180 1.49822 1.51400 1.55829 1.59695 1.71136 2.56761 2.65839 3.11410 3.36969 3.45844 3.60809 3.75692 3.78434 3.83517 4.03125 4.08635 4.15999 4.21293 4.24519 4.33068 4.38613 4.42282 4.44992 4.53115 4.59103 4.66564 4.70845 4.76273 4.94633 5.04625 5.05605 5.22026 5.26845 5.31381 5.47616 5.55907 5.85210 6.26548 6.54645 7.13057 7.32789 7.43781 8.05393 8.28667 9.29999 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.001779 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.165748 B =15732.407163 C =15871.680824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.023 4.023 3 N -0.308 5.308 4 N -0.281 5.281 5 C -0.045 4.045 6 C 0.140 3.860 7 O -0.394 6.394 8 C 0.057 3.943 9 C 0.517 3.483 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.150 4.150 14 C 0.170 3.830 15 H 0.076 0.924 16 N -0.730 5.730 17 C -0.236 4.236 18 H 0.086 0.914 19 C -0.078 4.078 20 N -0.973 5.973 21 Si 0.974 3.026 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.265 1.265 25 C 0.132 3.868 26 H 0.038 0.962 27 C -0.143 4.143 28 S 0.255 5.745 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.369 0.631 41 H 0.249 0.751 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.179 -8.057 -24.392 33.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.300 4.300 3 N -0.147 5.147 4 N -0.121 5.121 5 C -0.325 4.325 6 C 0.060 3.940 7 O -0.313 6.313 8 C -0.021 4.021 9 C 0.307 3.693 10 O -0.459 6.459 11 N -0.342 5.342 12 C -0.019 4.019 13 C -0.191 4.191 14 C 0.060 3.940 15 H 0.094 0.906 16 N -0.369 5.369 17 C -0.368 4.368 18 H 0.104 0.896 19 C -0.270 4.270 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.190 1.190 25 C 0.027 3.973 26 H 0.056 0.944 27 C -0.201 4.201 28 S 0.499 5.501 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.606 -7.657 -23.778 33.028 hybrid contribution 1.097 0.845 1.173 1.814 sum -20.509 -6.812 -22.605 31.273 Atomic orbital electron populations 1.20682 0.80965 1.06433 1.05731 1.30047 1.06330 0.92067 1.01603 1.71446 0.97070 1.28752 1.17471 1.71368 1.07426 1.19079 1.14217 1.29133 1.04266 0.92972 1.06094 1.20990 0.85571 1.03177 0.84235 1.88009 1.28428 1.88604 1.26251 1.22355 0.84036 1.03944 0.91803 1.20685 0.80310 0.76323 0.91990 1.90710 1.50338 1.51089 1.53751 1.48537 1.11973 1.65617 1.08092 1.22668 0.84015 1.02882 0.92377 1.23399 0.97407 1.01749 0.96498 1.21467 0.86891 0.96605 0.88991 0.90606 1.42550 1.25405 1.23904 1.45044 1.19658 0.98802 1.02952 1.15342 0.89608 1.25603 1.02867 0.98027 1.00488 1.69845 1.41241 1.18740 1.32489 0.85124 0.79638 0.78352 0.76535 1.21387 1.22928 1.18984 1.21658 0.94887 0.97893 0.82878 0.94375 1.21921 0.99292 0.98600 1.00334 1.83343 0.94949 1.09246 1.62537 0.87804 0.88325 0.86598 0.88223 0.86050 0.86964 0.85284 0.87876 0.87469 0.92783 0.88880 0.79887 0.94201 0.92550 0.93420 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.48 71.23 0.75 0.19 16 2 C -0.02 -0.38 7.53 88.46 0.67 0.29 16 3 N -0.31 -7.89 11.66 -50.85 -0.59 -8.48 16 4 N -0.28 -7.68 11.66 -50.85 -0.59 -8.27 16 5 C -0.05 -0.92 7.16 88.46 0.63 -0.29 16 6 C 0.14 2.05 6.53 71.23 0.47 2.52 16 7 O -0.39 -9.10 9.86 -129.94 -1.28 -10.39 16 8 C 0.06 0.99 5.42 71.23 0.39 1.38 16 9 C 0.52 15.14 7.72 87.65 0.68 15.82 16 10 O -0.58 -23.56 15.56 15.98 0.25 -23.31 16 11 N -0.61 -16.75 3.07 -788.07 -2.42 -19.17 16 12 C 0.10 1.92 6.69 86.86 0.58 2.51 16 13 C -0.15 -4.21 6.77 31.99 0.22 -4.00 16 14 C 0.17 6.15 3.14 46.18 0.15 6.30 16 15 H 0.08 2.64 7.80 -2.39 -0.02 2.62 16 16 N -0.73 -35.46 5.22 -317.32 -1.66 -37.12 16 17 C -0.24 -12.45 9.96 84.03 0.84 -11.61 16 18 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 20 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 21 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 C 0.13 4.63 3.20 45.34 0.15 4.78 16 26 H 0.04 1.64 7.72 -2.39 -0.02 1.62 16 27 C -0.14 -4.81 9.10 71.98 0.66 -4.16 16 28 S 0.26 3.44 23.04 -56.49 -1.30 2.14 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.12 0.13 8.14 -2.39 -0.02 0.12 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 1.33 7.84 -2.39 -0.02 1.32 16 35 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.30 7.47 -2.39 -0.02 1.28 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.37 20.15 7.56 -92.71 -0.70 19.44 16 41 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.05 1.72 6.91 -2.39 -0.02 1.71 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -85.24 384.22 1.66 -83.58 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.32 Total: 23.36 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.62 Total: 9.82 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -4.98 Total: -132.24 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.03 Total: -33.69 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.30 Total: 2.14 kcal Total: -85.24 1.66 -83.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331901822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.470 kcal (2) G-P(sol) polarization free energy of solvation -85.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds