Wall clock time and date at job start Sat Apr 11 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29410 * 125.69445 * 2 1 4 4 N 1.26394 * 116.47622 * 180.02562 * 3 2 1 5 5 C 1.29419 * 116.47740 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.70186 * 179.97438 * 5 4 3 7 7 O 1.42908 * 109.46864 * 90.02485 * 6 5 4 8 8 C 1.42900 * 113.99970 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46953 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00141 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99571 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.65393 * 359.93645 * 11 9 8 13 13 C 1.54906 * 104.83815 * 204.17763 * 12 11 9 14 14 C 1.55157 * 101.57850 * 322.99441 * 13 12 11 15 15 H 1.09003 * 110.87360 * 277.06193 * 14 13 12 16 16 N 1.46505 * 110.71973 * 153.86334 * 14 13 12 17 17 C 1.36933 * 119.99900 * 91.47408 * 16 14 13 18 18 H 1.08001 * 120.00575 * 0.02562 * 17 16 14 19 19 C 1.38820 * 120.00046 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99517 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47444 * 60.00070 * 21 19 17 23 23 H 1.48503 * 109.47151 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47187 * 299.99980 * 21 19 17 25 25 C 1.47027 * 125.64526 * 180.02562 * 11 9 8 26 26 H 1.09002 * 109.88429 * 59.47383 * 25 11 9 27 27 C 1.53005 * 110.00938 * 298.37790 * 25 11 9 28 28 S 1.71216 * 125.69442 * 180.29967 * 2 1 3 29 29 H 1.08995 * 109.46695 * 89.98063 * 1 2 3 30 30 H 1.08993 * 109.46958 * 209.97963 * 1 2 3 31 31 H 1.08997 * 109.47317 * 329.98258 * 1 2 3 32 32 H 1.09000 * 109.47193 * 330.02849 * 6 5 4 33 33 H 1.08998 * 109.47809 * 210.02618 * 6 5 4 34 34 H 1.09001 * 109.47037 * 59.99683 * 8 7 6 35 35 H 1.09005 * 109.46890 * 299.99967 * 8 7 6 36 36 H 1.09009 * 110.35863 * 85.34033 * 12 11 9 37 37 H 1.08994 * 110.36625 * 323.02418 * 12 11 9 38 38 H 1.08994 * 111.00476 * 204.92106 * 13 12 11 39 39 H 1.09001 * 110.99920 * 81.06228 * 13 12 11 40 40 H 0.97000 * 120.00109 * 271.47584 * 16 14 13 41 41 H 0.97002 * 119.99392 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47215 * 301.80506 * 27 25 11 43 43 H 1.09001 * 109.46642 * 61.80009 * 27 25 11 44 44 H 1.09002 * 109.46991 * 181.80028 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8485 -0.0005 5 6 3.8938 -0.3874 -0.0004 6 6 5.3233 -0.8641 -0.0015 7 8 5.7761 -1.0149 1.3455 8 6 7.1277 -1.4651 1.4574 9 6 7.4971 -1.5887 2.9131 10 8 6.6832 -1.3176 3.7705 11 7 8.7323 -1.9997 3.2623 12 6 9.8141 -2.3602 2.3280 13 6 10.7332 -3.3120 3.1335 14 6 10.6762 -2.6768 4.5479 15 1 11.3828 -1.8510 4.6316 16 7 10.9352 -3.6844 5.5795 17 6 12.2130 -3.8970 6.0234 18 1 13.0299 -3.3217 5.6135 19 6 12.4585 -4.8521 7.0004 20 7 11.4628 -5.5530 7.5004 21 14 14.2014 -5.1416 7.6066 22 1 14.7377 -3.8857 8.1900 23 1 14.1950 -6.2058 8.6423 24 1 15.0574 -5.5640 6.4690 25 6 9.2234 -2.1643 4.6383 26 1 8.6063 -2.8903 5.1678 27 6 9.1903 -0.8212 5.3703 28 16 2.5061 -1.3905 -0.0073 29 1 -0.3632 0.0003 -1.0276 30 1 -0.3633 -0.8901 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.9492 -0.1347 -0.5157 33 1 5.3862 -1.8233 -0.5155 34 1 7.7908 -0.7478 0.9735 35 1 7.2283 -2.4366 0.9735 36 1 10.3641 -1.4699 2.0229 37 1 9.4074 -2.8730 1.4564 38 1 11.7496 -3.2993 2.7402 39 1 10.3326 -4.3257 3.1440 40 1 10.2015 -4.2010 5.9479 41 1 11.6343 -6.2201 8.1834 42 1 9.7990 -0.0972 4.8288 43 1 8.1624 -0.4627 5.4253 44 1 9.5858 -0.9469 6.3782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331901826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:25 Heat of formation + Delta-G solvation = 7.337731 kcal Electronic energy + Delta-G solvation = -26373.746827 eV Core-core repulsion = 22454.482189 eV Total energy + Delta-G solvation = -3919.264638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67086 -40.10997 -38.40657 -37.09771 -34.17575 -33.81226 -31.88183 -31.03448 -30.80232 -29.46029 -27.85989 -26.60537 -25.24957 -24.66717 -23.08365 -22.49916 -20.41764 -20.23110 -19.75449 -18.95090 -17.56888 -17.21874 -16.82926 -16.62129 -16.10713 -15.79285 -15.67484 -14.84699 -14.63056 -14.44748 -13.90964 -13.63246 -13.61030 -13.56079 -13.43256 -13.16152 -12.97998 -12.77747 -12.55869 -12.20688 -12.09930 -11.88471 -11.65729 -11.19542 -11.06370 -10.86442 -10.85665 -10.65897 -10.62632 -10.30559 -10.20255 -10.16863 -10.07551 -10.03077 -9.79879 -9.55634 -8.97747 -8.46660 -7.07389 -5.84667 -3.15441 -0.06574 0.46891 0.94032 2.06232 2.68227 2.69264 3.38585 3.39540 3.44397 3.45317 3.80253 4.11944 4.31662 4.50680 4.52055 4.59949 4.78889 4.81268 4.86808 4.91196 4.97055 5.02651 5.11501 5.19255 5.29790 5.36505 5.44330 5.51995 5.62931 5.75744 5.89516 6.05138 6.08932 6.25282 6.40891 6.46499 6.54150 6.60958 6.73836 6.87073 7.61865 7.66969 8.15579 8.27949 8.32706 9.43945 9.97994 10.32655 11.37287 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031632 B = 0.001792 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.956573 B =15618.257177 C =15776.666350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 N -0.263 5.263 4 N -0.237 5.237 5 C -0.021 4.021 6 C 0.143 3.857 7 O -0.355 6.355 8 C 0.050 3.950 9 C 0.527 3.473 10 O -0.521 6.521 11 N -0.609 5.609 12 C 0.095 3.905 13 C -0.156 4.156 14 C 0.177 3.823 15 H 0.069 0.931 16 N -0.713 5.713 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.128 3.872 26 H 0.078 0.922 27 C -0.155 4.155 28 S 0.198 5.802 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 7.237 -21.127 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.296 4.296 3 N -0.102 5.102 4 N -0.077 5.077 5 C -0.300 4.300 6 C 0.063 3.937 7 O -0.272 6.272 8 C -0.030 4.030 9 C 0.314 3.686 10 O -0.396 6.396 11 N -0.345 5.345 12 C -0.028 4.028 13 C -0.197 4.197 14 C 0.065 3.935 15 H 0.087 0.913 16 N -0.354 5.354 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.024 3.976 26 H 0.096 0.904 27 C -0.213 4.213 28 S 0.441 5.559 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.112 7.771 -20.436 27.764 hybrid contribution 0.997 -0.389 0.197 1.088 sum -16.115 7.382 -20.239 26.903 Atomic orbital electron populations 1.20423 0.83684 1.05034 1.04440 1.29360 1.04576 0.92052 1.03632 1.71493 0.96754 1.26758 1.15157 1.71423 1.06592 1.17051 1.12609 1.28660 1.02205 0.92814 1.06333 1.20657 0.86600 1.00815 0.85661 1.88074 1.27389 1.88037 1.23706 1.22261 0.84207 1.00766 0.95775 1.19635 0.81034 0.77995 0.89976 1.90734 1.48621 1.48654 1.51586 1.48494 1.11083 1.65941 1.08952 1.22444 0.88778 0.98792 0.92776 1.23579 0.98701 0.99009 0.98456 1.21249 0.91478 0.92308 0.88509 0.91349 1.42342 1.07472 1.41881 1.43657 1.19169 0.85151 1.16594 1.16812 0.91000 1.24777 0.97483 0.99010 0.99325 1.69659 1.29938 1.26698 1.31376 0.86246 0.84034 0.77473 0.78255 1.21166 1.21673 1.21201 1.21987 0.96845 0.97810 0.80924 0.90403 1.22046 1.02197 0.96209 1.00840 1.83725 0.97153 1.11163 1.63852 0.88943 0.89450 0.88600 0.89290 0.90178 0.89774 0.89860 0.91460 0.91387 0.90434 0.90587 0.77958 0.93289 0.93074 0.92010 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.49 36.01 0.38 0.04 16 2 C -0.02 -0.16 7.53 -13.29 -0.10 -0.26 16 3 N -0.26 -3.28 11.66 32.58 0.38 -2.90 16 4 N -0.24 -3.16 11.66 32.58 0.38 -2.78 16 5 C -0.02 -0.23 7.16 -13.30 -0.10 -0.32 16 6 C 0.14 1.25 6.54 36.00 0.24 1.48 16 7 O -0.35 -4.48 9.86 -55.14 -0.54 -5.02 16 8 C 0.05 0.53 5.42 36.00 0.20 0.72 16 9 C 0.53 8.13 7.72 -10.99 -0.08 8.04 16 10 O -0.52 -10.39 15.55 -14.36 -0.22 -10.61 16 11 N -0.61 -9.01 3.07 -163.01 -0.50 -9.51 16 12 C 0.10 1.12 6.69 -2.53 -0.02 1.10 16 13 C -0.16 -2.37 6.77 -24.58 -0.17 -2.54 16 14 C 0.18 3.26 3.14 -66.09 -0.21 3.05 16 15 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 16 N -0.71 -16.93 5.22 -51.65 -0.27 -17.20 16 17 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 21 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.13 2.23 3.20 -66.95 -0.21 2.02 16 26 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 27 C -0.15 -2.63 9.11 37.16 0.34 -2.29 16 28 S 0.20 1.57 23.04 -107.50 -2.48 -0.91 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.39 9.94 7.56 -40.82 -0.31 9.64 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.11 6.90 -51.93 -0.36 0.75 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -35.65 384.21 -8.21 -43.86 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.46 Total: 5.18 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 0.02 Total: 4.05 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.71 Total: -58.97 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.77 Total: -15.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.65 -8.21 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331901826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.196 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds