Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29410 * 125.69445 * 2 1 4 4 N 1.26394 * 116.47622 * 180.02562 * 3 2 1 5 5 C 1.29419 * 116.47740 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.70186 * 179.97438 * 5 4 3 7 7 O 1.42908 * 109.46864 * 90.02485 * 6 5 4 8 8 C 1.42900 * 113.99970 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46953 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00141 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99571 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.65393 * 359.93645 * 11 9 8 13 13 C 1.54906 * 104.83815 * 204.17763 * 12 11 9 14 14 C 1.55157 * 101.57850 * 322.99441 * 13 12 11 15 15 H 1.09003 * 110.87360 * 277.06193 * 14 13 12 16 16 N 1.46505 * 110.71973 * 153.86334 * 14 13 12 17 17 C 1.36933 * 119.99900 * 91.47408 * 16 14 13 18 18 H 1.08001 * 120.00575 * 0.02562 * 17 16 14 19 19 C 1.38820 * 120.00046 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99517 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47444 * 60.00070 * 21 19 17 23 23 H 1.48503 * 109.47151 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47187 * 299.99980 * 21 19 17 25 25 C 1.47027 * 125.64526 * 180.02562 * 11 9 8 26 26 H 1.09002 * 109.88429 * 59.47383 * 25 11 9 27 27 C 1.53005 * 110.00938 * 298.37790 * 25 11 9 28 28 S 1.71216 * 125.69442 * 180.29967 * 2 1 3 29 29 H 1.08995 * 109.46695 * 89.98063 * 1 2 3 30 30 H 1.08993 * 109.46958 * 209.97963 * 1 2 3 31 31 H 1.08997 * 109.47317 * 329.98258 * 1 2 3 32 32 H 1.09000 * 109.47193 * 330.02849 * 6 5 4 33 33 H 1.08998 * 109.47809 * 210.02618 * 6 5 4 34 34 H 1.09001 * 109.47037 * 59.99683 * 8 7 6 35 35 H 1.09005 * 109.46890 * 299.99967 * 8 7 6 36 36 H 1.09009 * 110.35863 * 85.34033 * 12 11 9 37 37 H 1.08994 * 110.36625 * 323.02418 * 12 11 9 38 38 H 1.08994 * 111.00476 * 204.92106 * 13 12 11 39 39 H 1.09001 * 110.99920 * 81.06228 * 13 12 11 40 40 H 0.97000 * 120.00109 * 271.47584 * 16 14 13 41 41 H 0.97002 * 119.99392 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47215 * 301.80506 * 27 25 11 43 43 H 1.09001 * 109.46642 * 61.80009 * 27 25 11 44 44 H 1.09002 * 109.46991 * 181.80028 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8485 -0.0005 5 6 3.8938 -0.3874 -0.0004 6 6 5.3233 -0.8641 -0.0015 7 8 5.7761 -1.0149 1.3455 8 6 7.1277 -1.4651 1.4574 9 6 7.4971 -1.5887 2.9131 10 8 6.6832 -1.3176 3.7705 11 7 8.7323 -1.9997 3.2623 12 6 9.8141 -2.3602 2.3280 13 6 10.7332 -3.3120 3.1335 14 6 10.6762 -2.6768 4.5479 15 1 11.3828 -1.8510 4.6316 16 7 10.9352 -3.6844 5.5795 17 6 12.2130 -3.8970 6.0234 18 1 13.0299 -3.3217 5.6135 19 6 12.4585 -4.8521 7.0004 20 7 11.4628 -5.5530 7.5004 21 14 14.2014 -5.1416 7.6066 22 1 14.7377 -3.8857 8.1900 23 1 14.1950 -6.2058 8.6423 24 1 15.0574 -5.5640 6.4690 25 6 9.2234 -2.1643 4.6383 26 1 8.6063 -2.8903 5.1678 27 6 9.1903 -0.8212 5.3703 28 16 2.5061 -1.3905 -0.0073 29 1 -0.3632 0.0003 -1.0276 30 1 -0.3633 -0.8901 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.9492 -0.1347 -0.5157 33 1 5.3862 -1.8233 -0.5155 34 1 7.7908 -0.7478 0.9735 35 1 7.2283 -2.4366 0.9735 36 1 10.3641 -1.4699 2.0229 37 1 9.4074 -2.8730 1.4564 38 1 11.7496 -3.2993 2.7402 39 1 10.3326 -4.3257 3.1440 40 1 10.2015 -4.2010 5.9479 41 1 11.6343 -6.2201 8.1834 42 1 9.7990 -0.0972 4.8288 43 1 8.1624 -0.4627 5.4253 44 1 9.5858 -0.9469 6.3782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331901826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = -18.770653 kcal Electronic energy + Delta-G solvation = -26374.878971 eV Core-core repulsion = 22454.482189 eV Total energy + Delta-G solvation = -3920.396782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.41335 -41.30207 -39.37958 -38.29915 -35.91366 -34.44804 -33.48281 -32.35093 -31.57847 -30.91700 -28.76345 -27.34335 -26.84707 -25.31238 -24.78588 -23.68842 -21.67649 -21.08320 -20.45698 -20.17957 -19.14324 -18.40498 -17.77630 -17.56464 -17.09264 -16.74005 -16.57006 -16.34199 -15.78792 -15.48595 -15.36565 -14.95252 -14.67659 -14.51781 -14.30821 -14.09467 -13.93886 -13.61975 -13.47996 -13.39137 -13.17241 -13.07909 -12.95394 -12.88448 -12.63365 -12.52007 -12.20314 -12.09219 -11.70973 -11.57216 -11.53508 -11.35775 -10.98705 -10.89342 -10.84129 -10.73842 -10.66324 -9.69045 -9.01701 -7.93075 -5.22978 -0.72737 -0.14896 0.26113 1.28686 1.50168 1.52906 1.55965 1.58712 1.71002 2.57143 2.65801 3.11251 3.37070 3.45691 3.60347 3.75149 3.78432 3.83671 4.02895 4.07856 4.15725 4.20865 4.24958 4.32575 4.38453 4.42412 4.44918 4.52934 4.59794 4.65505 4.69815 4.76033 4.94128 5.04452 5.04613 5.20876 5.27255 5.31254 5.47649 5.55993 5.85188 6.27048 6.54598 7.13046 7.33510 7.43044 8.05983 8.29396 9.30177 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031632 B = 0.001792 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.956573 B =15618.257177 C =15776.666350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.022 4.022 3 N -0.307 5.307 4 N -0.279 5.279 5 C -0.044 4.044 6 C 0.140 3.860 7 O -0.394 6.394 8 C 0.057 3.943 9 C 0.518 3.482 10 O -0.579 6.579 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.148 4.148 14 C 0.170 3.830 15 H 0.073 0.927 16 N -0.729 5.729 17 C -0.238 4.238 18 H 0.084 0.916 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.301 1.301 24 H -0.274 1.274 25 C 0.133 3.867 26 H 0.042 0.958 27 C -0.145 4.145 28 S 0.249 5.751 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.370 0.630 41 H 0.250 0.750 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.097 7.229 -24.414 30.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.299 4.299 3 N -0.146 5.146 4 N -0.118 5.118 5 C -0.324 4.324 6 C 0.060 3.940 7 O -0.313 6.313 8 C -0.021 4.021 9 C 0.307 3.693 10 O -0.459 6.459 11 N -0.342 5.342 12 C -0.020 4.020 13 C -0.189 4.189 14 C 0.060 3.940 15 H 0.091 0.909 16 N -0.368 5.368 17 C -0.369 4.369 18 H 0.102 0.898 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.205 1.205 23 H -0.228 1.228 24 H -0.200 1.200 25 C 0.028 3.972 26 H 0.060 0.940 27 C -0.203 4.203 28 S 0.493 5.507 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.463 7.803 -23.811 29.981 hybrid contribution 0.698 -0.368 1.174 1.414 sum -15.766 7.435 -22.637 28.570 Atomic orbital electron populations 1.20680 0.80975 1.06059 1.06100 1.30032 1.06306 0.91994 1.01602 1.71437 0.97073 1.28644 1.17457 1.71362 1.07379 1.18903 1.14191 1.29115 1.04191 0.92944 1.06114 1.20984 0.85602 1.03125 0.84243 1.88010 1.28445 1.88581 1.26240 1.22356 0.84163 1.03828 0.91802 1.20685 0.80139 0.76482 0.91994 1.90709 1.50241 1.51185 1.53740 1.48538 1.11967 1.65628 1.08090 1.22668 0.87327 0.99496 0.92494 1.23384 1.00526 0.98651 0.96321 1.21460 0.91888 0.91521 0.89142 0.90919 1.42520 1.06247 1.42937 1.45105 1.19607 0.86374 1.15351 1.15593 0.89783 1.25586 1.01061 0.99750 1.00455 1.69834 1.31953 1.27903 1.32492 0.85206 0.79888 0.77015 0.77595 1.20507 1.22788 1.19969 1.21650 0.95786 0.96903 0.82869 0.93981 1.21932 1.01466 0.96522 1.00383 1.83443 0.95209 1.09452 1.62604 0.86790 0.87248 0.88696 0.87866 0.86394 0.86263 0.85972 0.88374 0.87122 0.89008 0.92414 0.79783 0.94160 0.91074 0.93507 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.49 71.24 0.75 0.17 16 2 C -0.02 -0.36 7.53 88.47 0.67 0.31 16 3 N -0.31 -7.75 11.66 -50.84 -0.59 -8.34 16 4 N -0.28 -7.46 11.66 -50.84 -0.59 -8.05 16 5 C -0.04 -0.90 7.16 88.46 0.63 -0.27 16 6 C 0.14 2.05 6.54 71.23 0.47 2.52 16 7 O -0.39 -9.10 9.86 -129.94 -1.28 -10.38 16 8 C 0.06 0.99 5.42 71.24 0.39 1.38 16 9 C 0.52 15.14 7.72 87.66 0.68 15.82 16 10 O -0.58 -23.55 15.55 15.99 0.25 -23.30 16 11 N -0.61 -16.76 3.07 -788.04 -2.42 -19.18 16 12 C 0.10 1.92 6.69 86.85 0.58 2.50 16 13 C -0.15 -4.12 6.77 31.99 0.22 -3.90 16 14 C 0.17 6.14 3.14 46.18 0.15 6.29 16 15 H 0.07 2.57 7.80 -2.39 -0.02 2.56 16 16 N -0.73 -35.18 5.22 -317.31 -1.66 -36.84 16 17 C -0.24 -12.51 9.96 84.04 0.84 -11.67 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -58.85 13.06 21.65 0.28 -58.56 16 21 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 C 0.13 4.67 3.20 45.34 0.15 4.82 16 26 H 0.04 1.78 7.72 -2.39 -0.02 1.76 16 27 C -0.14 -5.00 9.11 71.98 0.66 -4.35 16 28 S 0.25 3.51 23.04 -56.49 -1.30 2.21 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 1.17 7.85 -2.38 -0.02 1.15 16 36 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.11 1.26 7.48 -2.39 -0.02 1.25 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.37 19.94 7.56 -92.71 -0.70 19.24 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.74 6.90 -2.39 -0.02 1.73 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -83.95 384.21 1.66 -82.29 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.32 Total: 23.48 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.62 Total: 9.82 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -4.98 Total: -130.97 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.03 Total: -33.68 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.30 Total: 2.21 kcal Total: -83.95 1.66 -82.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331901826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.515 kcal (2) G-P(sol) polarization free energy of solvation -83.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds