Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29409 * 125.70176 * 2 1 4 4 N 1.26393 * 116.48026 * 179.74827 * 3 2 1 5 5 C 1.29418 * 116.47277 * 0.53305 * 4 3 2 6 6 C 1.50701 * 125.69626 * 179.77232 * 5 4 3 7 7 O 1.42895 * 109.47297 * 89.69428 * 6 5 4 8 8 C 1.42905 * 113.99920 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46788 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00404 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99885 * 179.97438 * 9 8 7 12 12 C 1.47430 * 125.64711 * 359.95898 * 11 9 8 13 13 C 1.54910 * 104.83204 * 204.16577 * 12 11 9 14 14 C 1.55161 * 101.58039 * 322.98954 * 13 12 11 15 15 H 1.08992 * 110.87119 * 153.93854 * 14 13 12 16 16 N 1.46500 * 110.71830 * 277.14155 * 14 13 12 17 17 C 1.36943 * 119.99878 * 268.51939 * 16 14 13 18 18 H 1.07996 * 119.99698 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99967 * 21 19 17 23 23 H 1.48503 * 109.47261 * 300.00148 * 21 19 17 24 24 H 1.48500 * 109.47454 * 180.02562 * 21 19 17 25 25 C 1.47015 * 125.65240 * 180.02562 * 11 9 8 26 26 H 1.09002 * 109.88497 * 59.48256 * 25 11 9 27 27 C 1.53006 * 109.88296 * 298.32337 * 25 11 9 28 28 S 1.71218 * 108.60574 * 359.50571 * 5 4 3 29 29 H 1.08995 * 109.47041 * 269.96093 * 1 2 3 30 30 H 1.09003 * 109.46560 * 29.96096 * 1 2 3 31 31 H 1.08995 * 109.47256 * 149.95829 * 1 2 3 32 32 H 1.09000 * 109.46996 * 329.68684 * 6 5 4 33 33 H 1.09001 * 109.46796 * 209.69013 * 6 5 4 34 34 H 1.09002 * 109.47047 * 59.99661 * 8 7 6 35 35 H 1.08993 * 109.46834 * 299.99326 * 8 7 6 36 36 H 1.09004 * 110.36814 * 323.00251 * 12 11 9 37 37 H 1.08997 * 110.36810 * 85.32609 * 12 11 9 38 38 H 1.09002 * 111.00118 * 204.92068 * 13 12 11 39 39 H 1.08995 * 111.00694 * 81.06331 * 13 12 11 40 40 H 0.97000 * 120.00415 * 88.51888 * 16 14 13 41 41 H 0.97001 * 119.99542 * 359.97438 * 20 19 17 42 42 H 1.09002 * 109.46907 * 302.18905 * 27 25 11 43 43 H 1.09004 * 109.46870 * 62.18655 * 27 25 11 44 44 H 1.08996 * 109.47517 * 182.19138 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8483 0.0050 5 6 3.8936 -0.3876 -0.0013 6 6 5.3233 -0.8644 -0.0021 7 8 5.7757 -1.0156 1.3449 8 6 7.1274 -1.4657 1.4569 9 6 7.4968 -1.5887 2.9128 10 8 6.6830 -1.3171 3.7700 11 7 8.7316 -2.0005 3.2622 12 6 9.8131 -2.3623 2.3279 13 6 10.7315 -3.3144 3.1341 14 6 10.6752 -2.6782 4.5481 15 1 10.8683 -3.4252 5.3180 16 7 11.6255 -1.5684 4.6554 17 6 12.8980 -1.7978 5.1065 18 1 13.2010 -2.7969 5.3828 19 6 13.7985 -0.7463 5.2077 20 7 13.4294 0.4712 4.8705 21 14 15.5345 -1.0593 5.8224 22 1 16.2118 -2.0264 4.9216 23 1 15.4797 -1.6182 7.1971 24 1 16.2921 0.2178 5.8377 25 6 9.2228 -2.1646 4.6382 26 1 8.6052 -2.8896 5.1683 27 6 9.1911 -0.8191 5.3660 28 16 2.5060 -1.3906 -0.0009 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3632 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5145 32 1 5.9492 -0.1349 -0.5160 33 1 5.3861 -1.8234 -0.5162 34 1 7.7905 -0.7484 0.9734 35 1 7.2280 -2.4371 0.9730 36 1 9.4060 -2.8755 1.4567 37 1 10.3638 -1.4727 2.0222 38 1 11.7480 -3.3026 2.7406 39 1 10.3303 -4.3277 3.1453 40 1 11.3534 -0.6711 4.4069 41 1 12.5280 0.6336 4.5510 42 1 9.7953 -0.0956 4.8185 43 1 8.1628 -0.4625 5.4258 44 1 9.5927 -0.9406 6.3719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331901829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = 13.497461 kcal Electronic energy + Delta-G solvation = -26731.451900 eV Core-core repulsion = 22812.454368 eV Total energy + Delta-G solvation = -3918.997532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66336 -40.16111 -38.46043 -37.18237 -34.31834 -33.80619 -31.92012 -31.00385 -30.80739 -29.11291 -27.73569 -26.56656 -25.25714 -24.65189 -23.49455 -22.48763 -20.40370 -20.06411 -19.74321 -18.71574 -17.73547 -17.33354 -16.86005 -16.61582 -16.11162 -15.82407 -15.72224 -14.94506 -14.77563 -14.40296 -13.98615 -13.75526 -13.62184 -13.56837 -13.42808 -13.16274 -12.94466 -12.78298 -12.48132 -12.41843 -12.16137 -11.82421 -11.34720 -11.27518 -11.07321 -10.85322 -10.73441 -10.64245 -10.33984 -10.27474 -10.19415 -10.14106 -10.03147 -9.99053 -9.57343 -9.25021 -9.00321 -8.46229 -7.14252 -6.17252 -3.18990 -0.05619 0.46947 0.93971 2.07937 2.67146 2.72462 3.40428 3.47842 3.50800 3.68650 3.81300 4.13431 4.32719 4.51657 4.59631 4.61143 4.80889 4.83498 4.88215 4.94082 4.96100 5.03603 5.11704 5.17794 5.30656 5.36120 5.41495 5.59161 5.60975 5.69644 5.80393 5.96216 6.19775 6.27851 6.35995 6.47243 6.50821 6.61338 6.75850 6.85595 7.67164 7.73614 8.16995 8.28056 8.67595 9.12542 9.99062 10.13332 11.30058 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.001915 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.089511 B =14619.060510 C =14784.958967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 N -0.262 5.262 4 N -0.236 5.236 5 C -0.020 4.020 6 C 0.143 3.857 7 O -0.355 6.355 8 C 0.049 3.951 9 C 0.528 3.472 10 O -0.523 6.523 11 N -0.608 5.608 12 C 0.101 3.899 13 C -0.159 4.159 14 C 0.177 3.823 15 H 0.073 0.927 16 N -0.724 5.724 17 C -0.336 4.336 18 H 0.066 0.934 19 C -0.042 4.042 20 N -0.940 5.940 21 Si 1.080 2.920 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.285 1.285 25 C 0.127 3.873 26 H 0.073 0.927 27 C -0.149 4.149 28 S 0.194 5.806 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.371 0.629 41 H 0.255 0.745 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.793 -8.943 -14.173 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.296 4.296 3 N -0.101 5.101 4 N -0.075 5.075 5 C -0.299 4.299 6 C 0.062 3.938 7 O -0.272 6.272 8 C -0.030 4.030 9 C 0.315 3.685 10 O -0.399 6.399 11 N -0.344 5.344 12 C -0.021 4.021 13 C -0.200 4.200 14 C 0.065 3.935 15 H 0.090 0.910 16 N -0.368 5.368 17 C -0.467 4.467 18 H 0.084 0.916 19 C -0.240 4.240 20 N -0.584 5.584 21 Si 0.911 3.089 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.211 1.211 25 C 0.024 3.976 26 H 0.091 0.909 27 C -0.207 4.207 28 S 0.437 5.563 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.207 0.793 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.799 -7.840 -13.135 25.819 hybrid contribution -1.247 -0.459 -0.740 1.521 sum -22.046 -8.299 -13.876 27.339 Atomic orbital electron populations 1.20421 0.83690 1.04806 1.04637 1.29363 1.04556 0.92013 1.03672 1.71497 0.96761 1.26739 1.15076 1.71432 1.06555 1.17048 1.12483 1.28675 1.02163 0.92776 1.06281 1.20664 0.86623 1.00832 0.85665 1.88062 1.27368 1.88076 1.23724 1.22265 0.84244 1.00759 0.95768 1.19622 0.81055 0.77871 0.89992 1.90718 1.48851 1.48709 1.51610 1.48583 1.11089 1.65888 1.08867 1.22365 0.88265 0.99227 0.92268 1.23507 0.99867 0.97066 0.99568 1.21131 0.86645 0.91159 0.94529 0.90958 1.42549 1.10153 1.05158 1.78901 1.20031 0.89159 0.96252 1.41232 0.91581 1.25778 1.04578 0.92719 1.00895 1.70900 1.20380 1.20531 1.46619 0.83241 0.74887 0.75184 0.75625 1.22251 1.22233 1.21077 1.22047 0.96000 0.98152 0.81394 0.90922 1.21921 1.01426 0.96548 1.00827 1.83662 0.97249 1.11300 1.64062 0.88828 0.88641 0.89540 0.89198 0.90212 0.89645 0.89946 0.91614 0.91035 0.89307 0.91823 0.79288 0.93412 0.92172 0.92471 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.48 36.01 0.38 0.03 16 2 C -0.02 -0.17 7.53 -13.30 -0.10 -0.27 16 3 N -0.26 -3.39 11.66 32.58 0.38 -3.01 16 4 N -0.24 -3.29 11.66 32.58 0.38 -2.91 16 5 C -0.02 -0.23 7.16 -13.29 -0.10 -0.32 16 6 C 0.14 1.34 6.53 36.01 0.24 1.57 16 7 O -0.35 -4.71 9.86 -55.14 -0.54 -5.25 16 8 C 0.05 0.57 5.43 36.01 0.20 0.76 16 9 C 0.53 8.47 7.72 -10.98 -0.08 8.39 16 10 O -0.52 -10.56 15.55 -14.35 -0.22 -10.78 16 11 N -0.61 -9.45 3.06 -163.01 -0.50 -9.95 16 12 C 0.10 1.37 6.67 -2.53 -0.02 1.36 16 13 C -0.16 -2.41 6.77 -24.58 -0.17 -2.57 16 14 C 0.18 3.27 3.48 -66.10 -0.23 3.04 16 15 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 16 N -0.72 -16.72 4.55 -51.65 -0.23 -16.95 16 17 C -0.34 -8.84 9.96 -15.06 -0.15 -8.99 16 18 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 19 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 20 N -0.94 -28.16 13.70 55.49 0.76 -27.40 16 21 Si 1.08 25.02 29.92 -169.99 -5.09 19.93 16 22 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.13 2.20 3.43 -66.96 -0.23 1.98 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 C -0.15 -2.83 8.48 37.16 0.32 -2.52 16 28 S 0.19 1.56 23.04 -107.50 -2.48 -0.91 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.67 7.84 -51.93 -0.41 0.26 16 36 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.37 9.05 4.52 -40.82 -0.18 8.86 16 41 H 0.25 7.55 6.77 -40.82 -0.28 7.28 16 42 H 0.06 1.24 6.24 -51.93 -0.32 0.91 16 43 H 0.06 1.11 6.91 -51.93 -0.36 0.75 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -36.10 378.69 -8.10 -44.19 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.22 Total: 6.14 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.05 Total: 1.20 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.79 Total: -60.22 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.77 Total: -16.03 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.10 -8.10 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331901829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.692 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds