Wall clock time and date at job start Sat Apr 11 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29409 * 125.70176 * 2 1 4 4 N 1.26393 * 116.48026 * 179.74827 * 3 2 1 5 5 C 1.29418 * 116.47277 * 0.53305 * 4 3 2 6 6 C 1.50701 * 125.69626 * 179.77232 * 5 4 3 7 7 O 1.42895 * 109.47297 * 89.69428 * 6 5 4 8 8 C 1.42905 * 113.99920 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46788 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00404 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99885 * 179.97438 * 9 8 7 12 12 C 1.47430 * 125.64711 * 359.95898 * 11 9 8 13 13 C 1.54910 * 104.83204 * 204.16577 * 12 11 9 14 14 C 1.55161 * 101.58039 * 322.98954 * 13 12 11 15 15 H 1.08992 * 110.87119 * 153.93854 * 14 13 12 16 16 N 1.46500 * 110.71830 * 277.14155 * 14 13 12 17 17 C 1.36943 * 119.99878 * 268.51939 * 16 14 13 18 18 H 1.07996 * 119.99698 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99967 * 21 19 17 23 23 H 1.48503 * 109.47261 * 300.00148 * 21 19 17 24 24 H 1.48500 * 109.47454 * 180.02562 * 21 19 17 25 25 C 1.47015 * 125.65240 * 180.02562 * 11 9 8 26 26 H 1.09002 * 109.88497 * 59.48256 * 25 11 9 27 27 C 1.53006 * 109.88296 * 298.32337 * 25 11 9 28 28 S 1.71218 * 108.60574 * 359.50571 * 5 4 3 29 29 H 1.08995 * 109.47041 * 269.96093 * 1 2 3 30 30 H 1.09003 * 109.46560 * 29.96096 * 1 2 3 31 31 H 1.08995 * 109.47256 * 149.95829 * 1 2 3 32 32 H 1.09000 * 109.46996 * 329.68684 * 6 5 4 33 33 H 1.09001 * 109.46796 * 209.69013 * 6 5 4 34 34 H 1.09002 * 109.47047 * 59.99661 * 8 7 6 35 35 H 1.08993 * 109.46834 * 299.99326 * 8 7 6 36 36 H 1.09004 * 110.36814 * 323.00251 * 12 11 9 37 37 H 1.08997 * 110.36810 * 85.32609 * 12 11 9 38 38 H 1.09002 * 111.00118 * 204.92068 * 13 12 11 39 39 H 1.08995 * 111.00694 * 81.06331 * 13 12 11 40 40 H 0.97000 * 120.00415 * 88.51888 * 16 14 13 41 41 H 0.97001 * 119.99542 * 359.97438 * 20 19 17 42 42 H 1.09002 * 109.46907 * 302.18905 * 27 25 11 43 43 H 1.09004 * 109.46870 * 62.18655 * 27 25 11 44 44 H 1.08996 * 109.47517 * 182.19138 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8483 0.0050 5 6 3.8936 -0.3876 -0.0013 6 6 5.3233 -0.8644 -0.0021 7 8 5.7757 -1.0156 1.3449 8 6 7.1274 -1.4657 1.4569 9 6 7.4968 -1.5887 2.9128 10 8 6.6830 -1.3171 3.7700 11 7 8.7316 -2.0005 3.2622 12 6 9.8131 -2.3623 2.3279 13 6 10.7315 -3.3144 3.1341 14 6 10.6752 -2.6782 4.5481 15 1 10.8683 -3.4252 5.3180 16 7 11.6255 -1.5684 4.6554 17 6 12.8980 -1.7978 5.1065 18 1 13.2010 -2.7969 5.3828 19 6 13.7985 -0.7463 5.2077 20 7 13.4294 0.4712 4.8705 21 14 15.5345 -1.0593 5.8224 22 1 16.2118 -2.0264 4.9216 23 1 15.4797 -1.6182 7.1971 24 1 16.2921 0.2178 5.8377 25 6 9.2228 -2.1646 4.6382 26 1 8.6052 -2.8896 5.1683 27 6 9.1911 -0.8191 5.3660 28 16 2.5060 -1.3906 -0.0009 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3632 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5145 32 1 5.9492 -0.1349 -0.5160 33 1 5.3861 -1.8234 -0.5162 34 1 7.7905 -0.7484 0.9734 35 1 7.2280 -2.4371 0.9730 36 1 9.4060 -2.8755 1.4567 37 1 10.3638 -1.4727 2.0222 38 1 11.7480 -3.3026 2.7406 39 1 10.3303 -4.3277 3.1453 40 1 11.3534 -0.6711 4.4069 41 1 12.5280 0.6336 4.5510 42 1 9.7953 -0.0956 4.8185 43 1 8.1628 -0.4625 5.4258 44 1 9.5927 -0.9406 6.3719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331901829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:27 Heat of formation + Delta-G solvation = -12.317804 kcal Electronic energy + Delta-G solvation = -26732.571334 eV Core-core repulsion = 22812.454368 eV Total energy + Delta-G solvation = -3920.116966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.43946 -41.42501 -39.52047 -38.40675 -36.08099 -34.47118 -33.52093 -32.36232 -31.58740 -30.62528 -28.74592 -27.36752 -26.72427 -25.49020 -25.29882 -23.73624 -21.48367 -21.09523 -20.47039 -19.98765 -19.52121 -18.46183 -17.92965 -17.61132 -17.12174 -16.91799 -16.64254 -16.42666 -15.81827 -15.72649 -15.39031 -14.96789 -14.79288 -14.45726 -14.23339 -14.18605 -14.01851 -13.90503 -13.53712 -13.45735 -13.17079 -13.09637 -13.00294 -12.79167 -12.52501 -12.33920 -11.97420 -11.80592 -11.75730 -11.58694 -11.37584 -11.23750 -11.00249 -10.90526 -10.88486 -10.78476 -10.68768 -9.75583 -9.09762 -8.33986 -5.28886 -0.74477 -0.17067 0.23448 1.26490 1.48688 1.61486 1.68643 1.70803 1.86415 2.60312 2.73941 3.07140 3.35755 3.44391 3.57102 3.67957 3.70051 3.76510 3.90167 4.04263 4.09950 4.11675 4.18006 4.24707 4.28870 4.31771 4.38541 4.48945 4.58077 4.63103 4.68809 4.69518 4.85013 4.96767 5.03499 5.15013 5.19745 5.28088 5.34657 5.66785 5.79341 6.46767 6.52542 7.06013 7.11425 7.41799 8.01675 8.13907 9.16852 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.001915 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.089511 B =14619.060510 C =14784.958967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.022 4.022 3 N -0.308 5.308 4 N -0.282 5.282 5 C -0.047 4.047 6 C 0.139 3.861 7 O -0.391 6.391 8 C 0.056 3.944 9 C 0.520 3.480 10 O -0.575 6.575 11 N -0.606 5.606 12 C 0.104 3.896 13 C -0.146 4.146 14 C 0.167 3.833 15 H 0.071 0.929 16 N -0.736 5.736 17 C -0.322 4.322 18 H 0.073 0.927 19 C -0.105 4.105 20 N -0.978 5.978 21 Si 1.126 2.874 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.300 1.300 25 C 0.132 3.868 26 H 0.082 0.918 27 C -0.137 4.137 28 S 0.259 5.741 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.362 0.638 41 H 0.241 0.759 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.647 -12.180 -16.050 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.300 4.300 3 N -0.147 5.147 4 N -0.121 5.121 5 C -0.326 4.326 6 C 0.060 3.940 7 O -0.310 6.310 8 C -0.023 4.023 9 C 0.309 3.691 10 O -0.454 6.454 11 N -0.341 5.341 12 C -0.017 4.017 13 C -0.186 4.186 14 C 0.057 3.943 15 H 0.089 0.911 16 N -0.379 5.379 17 C -0.454 4.454 18 H 0.091 0.909 19 C -0.297 4.297 20 N -0.626 5.626 21 Si 0.952 3.048 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.227 1.227 25 C 0.028 3.972 26 H 0.100 0.900 27 C -0.196 4.196 28 S 0.503 5.497 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.196 0.804 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.676 -11.150 -15.049 28.647 hybrid contribution -1.139 0.442 -0.129 1.228 sum -22.816 -10.708 -15.177 29.420 Atomic orbital electron populations 1.20688 0.80867 1.06453 1.05777 1.30071 1.06366 0.92048 1.01532 1.71443 0.97016 1.28771 1.17479 1.71375 1.07490 1.19099 1.14178 1.29090 1.04205 0.93050 1.06237 1.20983 0.85702 1.03125 0.84238 1.87999 1.28126 1.88630 1.26242 1.22340 0.84053 1.03714 0.92213 1.20566 0.80261 0.76393 0.91857 1.90694 1.50311 1.50837 1.53539 1.48611 1.11590 1.65679 1.08234 1.22481 0.87425 0.98699 0.93138 1.23349 0.99894 0.98856 0.96538 1.21364 0.86118 0.89975 0.96829 0.91074 1.42672 1.10067 1.06046 1.79110 1.20372 0.90157 0.96147 1.38698 0.90941 1.27074 1.08184 0.92470 1.01923 1.71011 1.19868 1.21996 1.49736 0.82633 0.71164 0.74823 0.76209 1.20032 1.20743 1.22668 1.21844 0.95612 0.96859 0.82884 0.90048 1.21769 1.00123 0.97433 1.00241 1.83304 0.94769 1.09156 1.62499 0.87722 0.88329 0.86557 0.88562 0.86020 0.87777 0.85306 0.86431 0.92589 0.90668 0.88544 0.80374 0.94839 0.94312 0.93321 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.48 71.24 0.75 0.17 16 2 C -0.02 -0.38 7.53 88.47 0.67 0.28 16 3 N -0.31 -8.10 11.66 -50.85 -0.59 -8.69 16 4 N -0.28 -8.00 11.66 -50.85 -0.59 -8.60 16 5 C -0.05 -1.00 7.16 88.46 0.63 -0.37 16 6 C 0.14 2.29 6.53 71.24 0.47 2.75 16 7 O -0.39 -9.65 9.86 -129.94 -1.28 -10.94 16 8 C 0.06 1.10 5.43 71.24 0.39 1.49 16 9 C 0.52 15.88 7.72 87.66 0.68 16.56 16 10 O -0.57 -23.27 15.55 16.02 0.25 -23.02 16 11 N -0.61 -17.73 3.06 -788.05 -2.42 -20.14 16 12 C 0.10 2.49 6.67 86.85 0.58 3.07 16 13 C -0.15 -3.99 6.77 31.99 0.22 -3.78 16 14 C 0.17 5.99 3.48 46.18 0.16 6.15 16 15 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 16 N -0.74 -34.26 4.55 -317.34 -1.44 -35.70 16 17 C -0.32 -16.95 9.96 84.03 0.84 -16.11 16 18 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 19 C -0.11 -5.91 5.50 84.86 0.47 -5.44 16 20 N -0.98 -60.25 13.70 21.65 0.30 -59.96 16 21 Si 1.13 50.52 29.92 68.60 2.05 52.58 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 C 0.13 4.50 3.43 45.34 0.16 4.66 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 27 C -0.14 -5.42 8.48 71.98 0.61 -4.81 16 28 S 0.26 3.63 23.04 -56.49 -1.30 2.33 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.13 1.34 7.84 -2.39 -0.02 1.32 16 36 H 0.12 1.67 7.48 -2.39 -0.02 1.65 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.36 18.22 4.52 -92.71 -0.42 17.81 16 41 H 0.24 14.93 6.77 -92.71 -0.63 14.30 16 42 H 0.04 1.67 6.24 -2.39 -0.01 1.66 16 43 H 0.05 1.97 6.91 -2.38 -0.02 1.96 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -83.91 378.69 2.32 -81.59 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.75 Total: 25.95 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 6.60 Total: 4.62 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -4.75 Total: -133.09 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.03 Total: -33.96 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.58 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.30 Total: 2.33 kcal Total: -83.91 2.32 -81.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331901829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.268 kcal (2) G-P(sol) polarization free energy of solvation -83.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds