Wall clock time and date at job start Sat Apr 11 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.53008 * 109.47187 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47268 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47174 * 180.02562 * 5 4 3 7 7 N 1.29504 * 126.14597 * 89.97277 * 6 5 4 8 8 N 1.26242 * 116.58371 * 180.02562 * 7 6 5 9 9 C 1.29892 * 117.66405 * 0.02562 * 8 7 6 10 10 N 1.39079 * 125.65786 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99724 * 0.02562 * 10 9 8 12 12 O 1.21583 * 120.00271 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99726 * 179.72728 * 11 10 9 14 14 C 1.47067 * 136.05686 * 359.89797 * 13 11 10 15 15 C 1.53749 * 87.88885 * 152.96850 * 14 13 11 16 16 O 1.42906 * 114.39471 * 272.67736 * 15 14 13 17 17 C 1.50695 * 114.27025 * 139.79130 * 15 14 13 18 18 H 1.08002 * 120.00089 * 266.47766 * 17 15 14 19 19 C 1.37877 * 120.00142 * 86.47767 * 17 15 14 20 20 N 1.31519 * 119.99849 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00442 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47076 * 59.99683 * 21 19 17 23 23 H 1.48502 * 109.47300 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46841 * 299.99763 * 21 19 17 25 25 C 1.47062 * 136.05651 * 180.27578 * 13 11 10 26 26 S 1.71313 * 108.68468 * 0.25999 * 9 8 7 27 27 H 1.09003 * 109.46732 * 299.99944 * 1 2 3 28 28 H 1.09001 * 109.47074 * 59.99902 * 1 2 3 29 29 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47179 * 240.00117 * 2 1 3 31 31 H 1.09001 * 109.47074 * 120.00098 * 2 1 3 32 32 H 1.09003 * 109.47238 * 60.00366 * 3 2 1 33 33 H 1.08993 * 109.47399 * 300.00194 * 3 2 1 34 34 H 1.08995 * 109.47069 * 59.99742 * 4 3 2 35 35 H 1.09001 * 109.47001 * 300.00052 * 4 3 2 36 36 H 1.09008 * 109.47240 * 59.99677 * 5 4 3 37 37 H 1.09003 * 109.46632 * 300.00274 * 5 4 3 38 38 H 0.97000 * 119.99793 * 180.02562 * 10 9 8 39 39 H 1.09007 * 113.46913 * 267.70143 * 14 13 11 40 40 H 1.09001 * 113.46886 * 38.13859 * 14 13 11 41 41 H 0.96700 * 114.00181 * 273.58718 * 16 15 14 42 42 H 0.97000 * 120.00230 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.47169 * 321.85928 * 25 13 11 44 44 H 1.09000 * 113.47049 * 92.30281 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5871 2.8849 -0.0013 7 7 6.3500 2.8852 -1.0477 8 7 7.5951 2.8846 -0.8390 9 6 7.9997 2.8833 0.3953 10 7 9.3261 2.8820 0.8137 11 6 10.3199 2.8825 -0.0968 12 8 10.0569 2.8837 -1.2838 13 7 11.6052 2.8868 0.3087 14 6 12.3080 2.8934 1.6005 15 6 13.4846 2.1948 0.8994 16 8 13.3889 0.7693 0.8648 17 6 14.8423 2.6904 1.3258 18 1 15.3319 3.4733 0.7656 19 6 15.4597 2.1444 2.4312 20 7 14.8634 1.1914 3.1137 21 14 17.1424 2.7592 2.9602 22 1 17.0641 4.2089 3.2725 23 1 17.5837 2.0163 4.1679 24 1 18.1170 2.5416 1.8610 25 6 12.9220 2.8937 -0.3460 26 16 6.6286 2.8753 1.4223 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9288 -0.8908 35 1 3.9338 0.9285 0.8891 36 1 3.7171 3.3983 0.8905 37 1 3.7163 3.3993 -0.8895 38 1 9.5359 2.8806 1.7607 39 1 12.5486 3.8944 1.9587 40 1 11.8260 2.2779 2.3601 41 1 13.7441 0.3321 1.6508 42 1 15.2975 0.8075 3.8916 43 1 12.9632 2.2785 -1.2449 44 1 13.3245 3.8947 -0.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350524821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:36 Heat of formation + Delta-G solvation = 17.076602 kcal Electronic energy + Delta-G solvation = -26126.838786 eV Core-core repulsion = 22207.996458 eV Total energy + Delta-G solvation = -3918.842329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23861 -39.94514 -38.06188 -36.77300 -34.95599 -34.13156 -33.36293 -32.27249 -30.29040 -28.83619 -27.34983 -25.73286 -25.24271 -24.81663 -22.78888 -21.63022 -21.35838 -19.98302 -19.75008 -18.33873 -17.77977 -17.39303 -16.71400 -16.07645 -16.03794 -15.34845 -15.00411 -14.94361 -14.76532 -14.24406 -14.17861 -13.82420 -13.68397 -13.41929 -13.24025 -12.84378 -12.77091 -12.45871 -12.24270 -12.11789 -11.63430 -11.44660 -11.38608 -11.32656 -11.12590 -11.10636 -11.02575 -10.87003 -10.57540 -10.54019 -10.36420 -10.24927 -9.75493 -9.64747 -9.37525 -8.86950 -8.71142 -8.49806 -7.94615 -6.48607 -4.59232 0.48036 0.50448 1.16190 2.54367 2.65341 3.11293 3.17651 3.20139 3.57232 3.83581 4.08887 4.14040 4.47343 4.52607 4.68135 4.72924 4.78103 4.92282 4.99567 5.05241 5.28096 5.37548 5.41798 5.43870 5.49391 5.55903 5.66426 5.72667 5.75781 5.83968 5.95442 5.97558 6.01956 6.12380 6.20769 6.30141 6.40169 6.53155 6.94317 7.13209 7.54893 7.70986 8.36868 8.45043 8.66271 8.86883 9.12556 9.40264 10.58210 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.001884 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.175407 B =14859.848862 C =15194.284719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.031 4.031 6 C -0.006 4.006 7 N -0.222 5.222 8 N -0.275 5.275 9 C 0.267 3.733 10 N -0.632 5.632 11 C 0.722 3.278 12 O -0.542 6.542 13 N -0.649 5.649 14 C 0.066 3.934 15 C 0.243 3.757 16 O -0.570 6.570 17 C -0.534 4.534 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.899 5.899 21 Si 0.911 3.089 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.131 3.869 26 S 0.088 5.912 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.420 0.580 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.394 0.606 42 H 0.275 0.725 43 H 0.070 0.930 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.885 1.884 2.813 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.073 4.073 6 C -0.289 4.289 7 N -0.058 5.058 8 N -0.119 5.119 9 C -0.104 4.104 10 N -0.286 5.286 11 C 0.423 3.577 12 O -0.414 6.414 13 N -0.387 5.387 14 C -0.056 4.056 15 C 0.201 3.799 16 O -0.383 6.383 17 C -0.573 4.573 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.737 3.263 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.009 3.991 26 S 0.327 5.673 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.258 0.742 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.251 0.749 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.243 1.866 1.119 22.349 hybrid contribution 1.312 0.230 1.602 2.084 sum -20.930 2.096 2.720 21.210 Atomic orbital electron populations 1.21776 0.95890 1.01600 1.01766 1.21538 0.95814 0.96823 1.02264 1.21608 0.94499 0.97116 1.02369 1.21660 0.95696 0.95023 1.03276 1.20162 0.83643 0.98917 1.04535 1.29803 1.02243 1.08394 0.88438 1.71412 0.96343 1.12059 1.25992 1.71597 1.05392 1.20582 1.14327 1.25622 0.91294 1.00844 0.92672 1.42134 1.00162 1.75307 1.10949 1.15271 0.79190 0.78930 0.84332 1.91029 1.81151 1.55426 1.13822 1.48872 1.01858 1.74489 1.13441 1.24362 0.93643 1.01373 0.86271 1.19548 0.90967 0.80384 0.89006 1.86066 1.85526 1.18149 1.48526 1.21378 1.02168 1.21415 1.12292 0.90801 1.25081 0.98485 0.94167 0.95256 1.69249 1.38988 1.26243 1.19417 0.86338 0.82780 0.78993 0.78142 1.19847 1.20969 1.19736 1.23309 0.76468 1.00276 0.99096 1.84670 0.98366 1.72440 1.11822 0.92783 0.92742 0.92836 0.91883 0.91967 0.91749 0.91592 0.90963 0.91507 0.89396 0.88286 0.74198 0.89825 0.91954 0.74921 0.91444 0.91162 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.44 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.67 5.21 -26.73 -0.14 -0.81 16 4 C -0.12 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.03 -0.24 5.84 -27.89 -0.16 -0.40 16 6 C -0.01 -0.07 7.05 -13.26 -0.09 -0.16 16 7 N -0.22 -3.71 11.65 33.58 0.39 -3.32 16 8 N -0.27 -5.36 9.73 29.97 0.29 -5.07 16 9 C 0.27 4.44 8.14 -87.05 -0.71 3.73 16 10 N -0.63 -10.72 5.41 -17.32 -0.09 -10.82 16 11 C 0.72 15.26 8.76 -86.92 -0.76 14.50 16 12 O -0.54 -13.46 15.80 5.29 0.08 -13.38 16 13 N -0.65 -13.45 3.69 -190.85 -0.70 -14.15 16 14 C 0.07 1.33 7.72 -8.38 -0.06 1.27 16 15 C 0.24 5.60 1.58 -91.13 -0.14 5.46 16 16 O -0.57 -14.31 13.55 -35.23 -0.48 -14.78 16 17 C -0.53 -12.80 8.70 -34.44 -0.30 -13.10 16 18 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 20 N -0.90 -21.84 11.01 55.43 0.61 -21.23 16 21 Si 0.91 18.72 29.54 -169.99 -5.02 13.70 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 C 0.13 2.78 8.02 -8.51 -0.07 2.71 16 26 S 0.09 1.01 23.31 -107.50 -2.51 -1.50 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.42 5.76 8.54 -40.82 -0.35 5.41 16 39 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.39 9.96 6.33 45.56 0.29 10.25 16 42 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 43 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -30.80 385.51 -10.03 -40.82 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.94 Total: 11.41 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -2.47 Total: 12.49 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.50 Total: -54.58 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.39 Total: -28.16 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.80 -10.03 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350524821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.900 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds