Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46649 * 2 1 4 4 H 1.09003 * 109.46961 * 55.00950 * 3 2 1 5 5 C 1.53006 * 109.46913 * 175.00223 * 3 2 1 6 6 N 1.46501 * 109.47157 * 175.00340 * 5 3 2 7 7 C 1.34769 * 119.99854 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00559 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.50704 * 109.47511 * 179.97438 * 9 7 6 11 11 C 1.34664 * 126.58651 * 275.03761 * 10 9 7 12 12 N 1.34134 * 108.01786 * 179.74146 * 11 10 9 13 13 C 1.30496 * 109.25675 * 0.37372 * 12 11 10 14 14 N 1.35047 * 108.70161 * 359.62603 * 13 12 11 15 15 H 0.96997 * 126.40535 * 180.25138 * 14 13 12 16 16 N 1.46498 * 109.47652 * 295.00012 * 3 2 1 17 17 C 1.34771 * 119.99482 * 84.99995 * 16 3 2 18 18 O 1.21283 * 120.00477 * 0.02562 * 17 16 3 19 19 C 1.50700 * 120.00169 * 180.02562 * 17 16 3 20 20 S 1.81003 * 109.47752 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00109 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00233 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99766 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99763 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99808 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47059 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47012 * 119.99920 * 25 23 21 28 28 H 1.48502 * 109.46883 * 239.99637 * 25 23 21 29 29 H 1.08996 * 109.46633 * 299.99062 * 1 2 3 30 30 H 1.08994 * 109.47134 * 59.99541 * 1 2 3 31 31 H 1.08999 * 109.46613 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46988 * 240.01070 * 2 1 3 33 33 H 1.08993 * 109.47639 * 120.00601 * 2 1 3 34 34 H 1.08999 * 109.47235 * 55.00282 * 5 3 2 35 35 H 1.09002 * 109.47410 * 295.00654 * 5 3 2 36 36 H 0.96999 * 119.99913 * 359.97438 * 6 5 3 37 37 H 1.08992 * 109.47512 * 59.99585 * 9 7 6 38 38 H 1.09004 * 109.47075 * 299.99537 * 9 7 6 39 39 H 1.07998 * 125.99171 * 359.92955 * 11 10 9 40 40 H 1.08002 * 125.65353 * 179.89694 * 13 12 11 41 41 H 0.96993 * 120.00566 * 265.00386 * 16 3 2 42 42 H 1.09006 * 109.47131 * 300.00514 * 19 17 16 43 43 H 1.09005 * 109.47308 * 59.99498 * 19 17 16 44 44 H 0.97003 * 119.99658 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4445 0.1257 6 7 4.0630 2.8170 0.0060 7 6 5.3856 3.0631 0.0858 8 8 6.1635 2.1485 0.2572 9 6 5.8980 4.4750 -0.0367 10 6 7.4000 4.4769 0.0869 11 6 8.1112 4.5081 1.2300 12 7 9.4134 4.4920 0.9090 13 6 9.5361 4.4601 -0.3898 14 7 8.3034 4.4465 -0.9410 15 1 8.0966 4.4198 -1.8883 16 7 1.6524 2.0976 -1.2517 17 6 0.4350 2.6644 -1.3668 18 8 -0.3394 2.6326 -0.4339 19 6 0.0360 3.3378 -2.6545 20 16 -1.6424 3.9966 -2.4962 21 6 -1.8448 4.7064 -4.0962 22 1 -1.0449 4.6450 -4.8193 23 6 -3.0318 5.3453 -4.4269 24 7 -4.0064 5.4204 -3.5454 25 14 -3.2466 6.0971 -6.1234 26 1 -2.0136 5.8780 -6.9215 27 1 -4.3993 5.4566 -6.8063 28 1 -3.4974 7.5547 -5.9906 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.9954 0.8313 -0.6660 35 1 3.8500 1.0377 1.0959 36 1 3.4409 3.5484 -0.1315 37 1 5.4679 5.0877 0.7554 38 1 5.6125 4.8823 -1.0067 39 1 7.7044 4.5375 2.2300 40 1 10.4690 4.4427 -0.9337 41 1 2.2717 2.1234 -1.9977 42 1 0.7274 4.1532 -2.8676 43 1 0.0671 2.6132 -3.4683 44 1 -4.8358 5.8672 -3.7764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356928372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -25.359049 kcal Electronic energy + Delta-G solvation = -26244.721605 eV Core-core repulsion = 22324.039128 eV Total energy + Delta-G solvation = -3920.682476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34757 -40.23762 -39.40230 -36.56924 -34.14647 -33.15108 -32.52087 -32.48671 -32.18369 -29.59979 -28.54157 -27.02910 -25.55341 -23.61513 -21.92033 -21.59325 -21.37007 -20.60691 -20.44366 -18.40308 -17.93303 -17.46008 -16.78967 -16.43752 -15.96526 -15.72300 -15.32005 -15.07539 -14.87363 -14.63828 -14.28619 -13.95347 -13.82148 -13.69475 -13.58803 -13.42269 -13.30916 -13.13683 -12.62221 -12.55373 -12.27852 -11.83210 -11.52583 -11.27664 -11.13305 -11.08826 -10.85789 -10.80562 -10.38772 -10.28736 -10.19496 -9.87616 -9.53891 -9.40926 -9.14825 -8.99771 -8.68154 -8.31916 -6.58043 -6.29207 -4.00041 1.66082 2.27388 2.66100 2.85274 2.90805 2.95284 3.06712 3.15817 3.22679 3.26447 3.60476 4.13151 4.18872 4.31989 4.47025 4.55687 4.59696 4.80732 4.94893 4.98129 5.04913 5.06467 5.13371 5.18010 5.31824 5.36224 5.38395 5.52772 5.71812 5.76550 5.81035 5.86860 5.98287 6.03324 6.05461 6.17154 6.42955 6.49135 6.56929 7.02787 7.11949 7.52371 7.55853 7.76832 7.85526 8.27824 8.48669 9.16603 10.78148 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.002275 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.085911 B =12304.542549 C =14283.968079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.135 3.865 4 H 0.097 0.903 5 C 0.114 3.886 6 N -0.728 5.728 7 C 0.512 3.488 8 O -0.530 6.530 9 C -0.067 4.067 10 C -0.007 4.007 11 C -0.007 4.007 12 N -0.495 5.495 13 C 0.187 3.813 14 N -0.563 5.563 15 H 0.418 0.582 16 N -0.737 5.737 17 C 0.532 3.468 18 O -0.507 6.507 19 C -0.155 4.155 20 S -0.058 6.058 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.406 0.594 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.167 0.833 40 H 0.208 0.792 41 H 0.397 0.603 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.279 -4.648 4.553 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.115 0.885 5 C -0.010 4.010 6 N -0.382 5.382 7 C 0.297 3.703 8 O -0.405 6.405 9 C -0.108 4.108 10 C -0.123 4.123 11 C -0.155 4.155 12 N -0.214 5.214 13 C -0.097 4.097 14 N -0.166 5.166 15 H 0.256 0.744 16 N -0.392 5.392 17 C 0.319 3.681 18 O -0.380 6.380 19 C -0.306 4.306 20 S 0.169 5.831 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.241 0.759 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.185 0.815 40 H 0.224 0.776 41 H 0.231 0.769 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.020 -5.300 6.911 22.753 hybrid contribution -0.048 0.777 -3.750 3.830 sum 20.972 -4.522 3.161 21.685 Atomic orbital electron populations 1.21804 0.93958 1.00779 1.03853 1.21881 0.97847 0.94935 1.02208 1.21252 0.92279 0.94775 0.88788 0.88538 1.21687 0.92791 0.83360 1.03210 1.45988 1.07463 1.10163 1.74559 1.20521 0.82103 0.91067 0.76564 1.90759 1.55769 1.46256 1.47758 1.20041 0.89467 0.95361 1.05963 1.20420 0.91341 1.11838 0.88734 1.22036 0.88927 1.06695 0.97852 1.70282 1.19677 1.19384 1.12010 1.24947 0.88970 1.05392 0.90416 1.43204 1.07259 1.56551 1.09597 0.74409 1.46124 1.17450 1.59523 1.16098 1.20267 0.80770 0.77494 0.89605 1.90729 1.50210 1.57078 1.40032 1.23549 1.07129 1.02784 0.97097 1.85401 1.06387 1.70878 1.20436 1.22894 1.03978 1.42110 0.99475 0.90941 1.24993 0.94849 0.95553 0.98186 1.70019 1.05048 1.40921 1.34187 0.86124 0.78305 0.78801 0.82308 1.19656 1.20533 1.20540 0.91962 0.91757 0.93549 0.91745 0.91142 0.90897 0.89937 0.75874 0.86170 0.87883 0.81543 0.77585 0.76871 0.89391 0.89355 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.52 37.16 0.32 -1.54 16 2 C -0.13 -1.23 5.61 -26.73 -0.15 -1.38 16 3 C 0.13 1.25 2.42 -67.93 -0.16 1.09 16 4 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 5 C 0.11 0.90 5.23 -4.04 -0.02 0.88 16 6 N -0.73 -5.38 5.39 -60.29 -0.32 -5.70 16 7 C 0.51 4.51 7.82 -10.99 -0.09 4.42 16 8 O -0.53 -6.93 16.03 5.55 0.09 -6.84 16 9 C -0.07 -0.41 6.26 -29.03 -0.18 -0.59 16 10 C -0.01 -0.06 5.73 -81.60 -0.47 -0.53 16 11 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 12 N -0.49 -5.70 11.25 -14.66 -0.16 -5.86 16 13 C 0.19 1.51 13.04 -90.37 -1.18 0.33 16 14 N -0.56 -3.94 6.15 -10.30 -0.06 -4.01 16 15 H 0.42 1.64 8.96 -40.82 -0.37 1.28 16 16 N -0.74 -7.71 4.47 -53.80 -0.24 -7.95 16 17 C 0.53 8.33 6.42 -10.99 -0.07 8.26 16 18 O -0.51 -9.78 13.00 5.55 0.07 -9.71 16 19 C -0.15 -2.79 6.16 36.01 0.22 -2.56 16 20 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 21 C -0.54 -14.61 9.50 30.94 0.29 -14.31 16 22 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 23 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 24 N -0.87 -25.32 13.22 55.49 0.73 -24.59 16 25 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 30 H 0.06 0.99 5.64 -51.93 -0.29 0.70 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.41 2.60 8.14 -40.82 -0.33 2.26 16 37 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.40 3.29 8.60 -40.82 -0.35 2.94 16 42 H 0.09 1.43 8.14 -51.91 -0.42 1.01 16 43 H 0.09 1.50 8.14 -51.91 -0.42 1.08 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -37.65 387.23 -9.43 -47.08 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.34 Total: 4.02 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.79 Total: -4.30 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.06 Total: -48.11 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.16 Total: -16.54 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.65 -9.43 -47.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356928372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.718 kcal (2) G-P(sol) polarization free energy of solvation -37.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds