Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46649 * 2 1 4 4 H 1.09003 * 109.46961 * 55.00950 * 3 2 1 5 5 C 1.53006 * 109.46913 * 175.00223 * 3 2 1 6 6 N 1.46501 * 109.47157 * 175.00340 * 5 3 2 7 7 C 1.34769 * 119.99854 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00559 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.50704 * 109.47511 * 179.97438 * 9 7 6 11 11 C 1.34664 * 126.58651 * 275.03761 * 10 9 7 12 12 N 1.34134 * 108.01786 * 179.74146 * 11 10 9 13 13 C 1.30496 * 109.25675 * 0.37372 * 12 11 10 14 14 N 1.35047 * 108.70161 * 359.62603 * 13 12 11 15 15 H 0.96997 * 126.40535 * 180.25138 * 14 13 12 16 16 N 1.46498 * 109.47652 * 295.00012 * 3 2 1 17 17 C 1.34771 * 119.99482 * 84.99995 * 16 3 2 18 18 O 1.21283 * 120.00477 * 0.02562 * 17 16 3 19 19 C 1.50700 * 120.00169 * 180.02562 * 17 16 3 20 20 S 1.81003 * 109.47752 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00109 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00233 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99766 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99763 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99808 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47059 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47012 * 119.99920 * 25 23 21 28 28 H 1.48502 * 109.46883 * 239.99637 * 25 23 21 29 29 H 1.08996 * 109.46633 * 299.99062 * 1 2 3 30 30 H 1.08994 * 109.47134 * 59.99541 * 1 2 3 31 31 H 1.08999 * 109.46613 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46988 * 240.01070 * 2 1 3 33 33 H 1.08993 * 109.47639 * 120.00601 * 2 1 3 34 34 H 1.08999 * 109.47235 * 55.00282 * 5 3 2 35 35 H 1.09002 * 109.47410 * 295.00654 * 5 3 2 36 36 H 0.96999 * 119.99913 * 359.97438 * 6 5 3 37 37 H 1.08992 * 109.47512 * 59.99585 * 9 7 6 38 38 H 1.09004 * 109.47075 * 299.99537 * 9 7 6 39 39 H 1.07998 * 125.99171 * 359.92955 * 11 10 9 40 40 H 1.08002 * 125.65353 * 179.89694 * 13 12 11 41 41 H 0.96993 * 120.00566 * 265.00386 * 16 3 2 42 42 H 1.09006 * 109.47131 * 300.00514 * 19 17 16 43 43 H 1.09005 * 109.47308 * 59.99498 * 19 17 16 44 44 H 0.97003 * 119.99658 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4445 0.1257 6 7 4.0630 2.8170 0.0060 7 6 5.3856 3.0631 0.0858 8 8 6.1635 2.1485 0.2572 9 6 5.8980 4.4750 -0.0367 10 6 7.4000 4.4769 0.0869 11 6 8.1112 4.5081 1.2300 12 7 9.4134 4.4920 0.9090 13 6 9.5361 4.4601 -0.3898 14 7 8.3034 4.4465 -0.9410 15 1 8.0966 4.4198 -1.8883 16 7 1.6524 2.0976 -1.2517 17 6 0.4350 2.6644 -1.3668 18 8 -0.3394 2.6326 -0.4339 19 6 0.0360 3.3378 -2.6545 20 16 -1.6424 3.9966 -2.4962 21 6 -1.8448 4.7064 -4.0962 22 1 -1.0449 4.6450 -4.8193 23 6 -3.0318 5.3453 -4.4269 24 7 -4.0064 5.4204 -3.5454 25 14 -3.2466 6.0971 -6.1234 26 1 -2.0136 5.8780 -6.9215 27 1 -4.3993 5.4566 -6.8063 28 1 -3.4974 7.5547 -5.9906 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.9954 0.8313 -0.6660 35 1 3.8500 1.0377 1.0959 36 1 3.4409 3.5484 -0.1315 37 1 5.4679 5.0877 0.7554 38 1 5.6125 4.8823 -1.0067 39 1 7.7044 4.5375 2.2300 40 1 10.4690 4.4427 -0.9337 41 1 2.2717 2.1234 -1.9977 42 1 0.7274 4.1532 -2.8676 43 1 0.0671 2.6132 -3.4683 44 1 -4.8358 5.8672 -3.7764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356928372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -53.674796 kcal Electronic energy + Delta-G solvation = -26245.949468 eV Core-core repulsion = 22324.039128 eV Total energy + Delta-G solvation = -3921.910339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.95961 -41.17190 -40.34988 -37.55812 -34.95877 -34.56762 -33.79386 -33.58157 -32.78146 -30.76000 -29.52685 -27.77660 -27.57397 -24.42300 -22.55311 -22.53000 -22.05658 -21.56873 -21.24395 -19.83344 -18.95102 -18.20081 -17.91416 -17.36813 -16.89357 -16.86415 -16.51942 -16.41421 -15.92473 -15.73788 -15.21785 -14.90936 -14.71862 -14.64018 -14.52709 -14.42798 -14.30852 -13.98118 -13.85814 -13.49647 -13.13831 -13.13046 -12.92706 -12.84104 -12.61245 -12.46892 -12.13909 -11.77209 -11.67188 -11.14677 -11.11169 -10.96648 -10.88221 -10.82353 -10.22527 -10.14169 -10.03466 -9.32342 -8.62199 -8.33707 -6.09741 1.05277 1.29432 1.41339 1.49000 1.58763 1.62066 1.69847 2.06275 2.25179 2.27570 2.32259 2.45838 3.00887 3.34946 3.56895 3.65307 3.91000 3.99807 4.02632 4.08753 4.13805 4.16982 4.35881 4.40936 4.54181 4.56701 4.57795 4.62633 4.67560 4.70417 4.85418 4.94444 5.06994 5.19072 5.26313 5.37204 5.43823 5.49599 5.56167 5.78379 6.21226 6.47166 6.54671 6.58938 7.08644 7.14380 7.21204 7.32417 8.75271 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.002275 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.085911 B =12304.542549 C =14283.968079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.142 3.858 4 H 0.082 0.918 5 C 0.123 3.877 6 N -0.720 5.720 7 C 0.515 3.485 8 O -0.575 6.575 9 C -0.062 4.062 10 C -0.006 4.006 11 C -0.043 4.043 12 N -0.542 5.542 13 C 0.188 3.812 14 N -0.555 5.555 15 H 0.434 0.566 16 N -0.710 5.710 17 C 0.539 3.461 18 O -0.548 6.548 19 C -0.132 4.132 20 S -0.146 6.146 21 C -0.544 4.544 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.995 3.005 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.275 1.275 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.413 0.587 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.166 0.834 40 H 0.242 0.758 41 H 0.414 0.586 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.165 -4.670 2.548 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.037 3.963 4 H 0.100 0.900 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.302 3.698 8 O -0.454 6.454 9 C -0.103 4.103 10 C -0.123 4.123 11 C -0.190 4.190 12 N -0.261 5.261 13 C -0.097 4.097 14 N -0.159 5.159 15 H 0.274 0.726 16 N -0.365 5.365 17 C 0.325 3.675 18 O -0.425 6.425 19 C -0.283 4.283 20 S 0.081 5.919 21 C -0.692 4.692 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.200 1.200 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.184 0.816 40 H 0.258 0.742 41 H 0.250 0.750 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.930 -5.326 4.874 24.039 hybrid contribution -0.544 0.699 -3.073 3.198 sum 22.385 -4.627 1.801 22.929 Atomic orbital electron populations 1.21736 0.96422 1.00583 1.01384 1.21865 0.95364 0.95156 1.04000 1.21247 0.93251 0.94442 0.87341 0.89967 1.21567 0.91112 0.83826 1.03625 1.45923 1.07309 1.10204 1.73810 1.20891 0.81890 0.91575 0.75394 1.90751 1.56839 1.47803 1.50010 1.20138 0.87812 0.93933 1.08375 1.20693 0.92557 1.10588 0.88495 1.22259 0.89338 1.08563 0.98859 1.70221 1.20496 1.21331 1.14087 1.25632 0.90436 1.03738 0.89858 1.43213 1.06738 1.55681 1.10260 0.72579 1.45801 1.15724 1.57764 1.17171 1.19852 0.81855 0.77606 0.88183 1.90733 1.51826 1.58866 1.41041 1.23393 1.02193 1.03726 0.99004 1.85559 1.13265 1.71933 1.21123 1.23234 1.04383 1.41794 0.99772 0.90026 1.26076 0.94487 0.96037 1.02552 1.70180 1.05734 1.42185 1.36633 0.84960 0.78692 0.77736 0.76910 1.18014 1.20237 1.20022 0.93893 0.94747 0.92598 0.90331 0.88965 0.90203 0.89755 0.75014 0.84212 0.84928 0.81649 0.74210 0.74964 0.87047 0.87932 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.52 71.98 0.61 -2.98 16 2 C -0.13 -2.10 5.61 30.60 0.17 -1.93 16 3 C 0.14 2.35 2.42 45.00 0.11 2.46 16 4 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 5 C 0.12 1.61 5.23 86.38 0.45 2.07 16 6 N -0.72 -8.63 5.39 -463.05 -2.49 -11.12 16 7 C 0.52 7.88 7.82 87.66 0.69 8.56 16 8 O -0.57 -14.17 16.03 -3.04 -0.05 -14.21 16 9 C -0.06 -0.59 6.26 29.10 0.18 -0.41 16 10 C -0.01 -0.10 5.73 40.95 0.23 0.13 16 11 C -0.04 -0.90 11.79 83.52 0.98 0.08 16 12 N -0.54 -12.39 11.25 -200.31 -2.25 -14.64 16 13 C 0.19 2.76 13.04 180.26 2.35 5.11 16 14 N -0.55 -6.64 6.15 -186.49 -1.15 -7.79 16 15 H 0.43 2.21 8.96 -92.71 -0.83 1.38 16 16 N -0.71 -13.17 4.47 -442.52 -1.98 -15.14 16 17 C 0.54 16.30 6.42 87.66 0.56 16.86 16 18 O -0.55 -21.40 13.00 -3.04 -0.04 -21.44 16 19 C -0.13 -4.57 6.16 71.24 0.44 -4.13 16 20 S -0.15 -7.55 20.57 -56.49 -1.16 -8.71 16 21 C -0.54 -29.56 9.50 67.95 0.65 -28.92 16 22 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -54.28 13.22 21.65 0.29 -54.00 16 25 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 27 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H 0.04 1.21 7.85 -2.39 -0.02 1.19 16 30 H 0.03 1.06 5.64 -2.39 -0.01 1.04 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.41 4.00 8.14 -92.71 -0.75 3.25 16 37 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.24 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.41 5.34 8.60 -92.71 -0.80 4.55 16 42 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -85.90 387.23 -0.24 -86.14 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -1.33 Total: 18.70 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 7.90 Total: -1.88 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -7.59 Total: -102.69 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.09 Total: -35.65 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.71 kcal Total: -85.90 -0.24 -86.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356928372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.464 kcal (2) G-P(sol) polarization free energy of solvation -85.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds